Difference between revisions of "IS Families"
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* ISNCY = Insertion Sequence Not Classified Yet
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;14. [[IS Families/IS982 family|IS<i>982</i> family]] | ;14. [[IS Families/IS982 family|IS<i>982</i> family]] | ||
− | |||
− | + | '''15.''' [[IS Families/IS982 family|'''IS''1202'' family''']] | |
− | ;17. [[IS Families/ISL3 family|IS''L3'' family]] | + | <br /> |
+ | |||
+ | ;16. [[IS Families/IS1380 family|IS<i>1380</i> family]] | ||
+ | |||
+ | ;17. [[IS Families/ISAs1 family|IS<i>As1</i> family]] | ||
+ | |||
+ | ;18. [[IS Families/ISL3 family|IS''L3'' family]] | ||
− | ; | + | ;19. [[IS Families/ISAzo13 family|IS<i>Azo13</i> family]] |
− | ; | + | ;20. [[IS Families/IS607 family|IS''607'' family]] |
− | ; | + | ;21. [[IS Families/IS91-ISCR families|IS''91'' and related IS''CR'' families]] |
− | ; | + | ;22. [[IS Families/IS200-IS605 family|IS<i>200</i>/IS<i>605</i> family]] [updated on 02/21/22] |
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Revision as of 14:25, 7 November 2022
Prokaryotic Insertion Sequences (IS) |
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Quick Access Table: Main Characteristics and Summary of Each IS family and Sub-Groups
Characteristics of insertion sequence families. Abbreviations: DR, duplication repeat; IS, insertion sequence; ORF, open reading frame. | |||||||||
Families | Sub-Groups | Typical size-range (bp) | DR (bp) | Ends | IRs | No ORFs | Frameshift | Catalytic residues | Mechanism |
---|---|---|---|---|---|---|---|---|---|
IS1 | — | 740–1180 | 8–9 | GGnnnTG | Y | 2 | ORFAB | DDE | copy-and-paste and cointegrate |
single ORF | 800–1200 | 0–9 | N | 1 | — | ||||
ISMhu11 | 900–4600 | 0–10 | Y | 2 | ORFAB | ||||
IS1595 | ISPna2 | 1000–1150 | 8 | GGCnnTG | Y | 1 | — | DDNK | copy-and-paste (?) |
ISPna2+pass | 1500–2600 | 8 | — | 1+pass | — | ||||
ISH4 | 1000 | 8 | CGCTCTT | 1 | DDNK | ||||
IS1016 | 700–745 | 7–9 | GGGgctg | DDEK | |||||
IS1595 | 900–1100 | 8 | CcTGATT | DDNK+ER4R7 | |||||
ISSod11 | 1000–1100 | 8 | nnnGcnTATC | DDHK+ER4R7 | |||||
ISNwi1 | 1080–1200 | 8 | ggnnatTAT | DDEK+ER4 | |||||
ISNwi1+pass | 1750–4750 | 8 | — | 1+pass | — | ||||
ISNha5 | 3450–7900 | 8 | CGGnnTT | 1 | DDER/K | ||||
IS3 | IS150 | 1200–1600 | 3–4 | TG | Y | 2 | ORFAB | DDE | copy-and-paste |
IS407 | 1100–1400 | 4 | TG | ||||||
IS51 | 1000–1400 | 3–4 | TG | ||||||
IS3 | 1150–1750 | 3–4 | TGa/g | ||||||
IS2 | 1300–1400 | 5 | TG | ||||||
IS481 | — | 950–1300 | 4–15 | TGT | Y | 1 | — | DDE | copy-and-paste (?) |
IS4 | IS10 | 1200–1350 | 9 | CT | Y | 1 | DDE | hairpin intermediate | cut-and-paste |
IS50 | 1350–1550 | 8–9 | C | hairpin intermediate | |||||
ISPepr1 | 1500–1600 | 7–8 | -T-AA | ? | |||||
IS4 | 1400–1600 | 10–13 | -AAT | ? | |||||
IS4Sa | 1150–1750 | 8–10 | CA | ? | |||||
ISH8 | 1400–1800 | 10 | ? | ||||||
IS231 | 1450–5400 | 10–12 | CAT | 1 or + * | *passenger genes | ||||
IS701 | — | 1400–1550 | 4 | — | Y | 1 | — | DDE | — |
ISAba11 | — | — | |||||||
ISH3 | — | 1225–1500 | 4–5 | C-GT | Y | 1 | — | DDE | — |
IS1634 | — | 1500–2000 | 5–6 | C | Y | 1 | — | DDE | — |
IS5 | IS903 | 950–1150 | 9 | GG | Y | 1 | — | DDE | — |
ISL2 | 850–1200 | 2–3 | — | ||||||
ISH1 | 900–1150 | 8 | -GC | ||||||
IS5 | 1000–1500 | 4 | Ga/g | ||||||
IS1031 | 850–1050 | 3 | GAa/g | ||||||
IS427 | 800–1000 | 2–4 | Ga/g | 2 | ORFAB | ||||
IS1182 | — | 1330–1950 | 0–60 | — | Y | 1 | — | DDE | — |
IS6 | — | 700–900 | 8 | GG | Y | 1 | — | DDE | co-integrate |
IS21 | — | 1750–2600 | 4–8 | TG | Y | 2 * | — | DDE | — |
IS30 | — | 1000–1700 | 2–3 | — | Y | 1 | — | DDE | copy-and-paste |
IS66 | — | 2000–3000 | 8–9 | GTAA | Y | 3* | — | DDE* | — |
ISBst12 | 1350–1900 | 1 | DDE | ||||||
IS256 | — | 1200–1500 | 8–9 | Ga/g | Y | 1 | — | DDE | copy-and-paste |
IS1249 | 1300 | 0–10 | GG | ||||||
ISC1250 | 1250 | 0–9 | GG | ||||||
ISH6 | — | 1450 | 8 | GGT | Y | 1 | — | DDE | — |
ISLre2 | — | 1500–2000 | 9 | — | Y | 1 | — | DDE | — |
ISKra4 | ISAzba1 | 1400–2900 | 0 | — | Y | 1 or + * | — | DDE | — |
ISMich2 | 1250–1400 | 8 | GGG | 1 or 2 | ORFAB | ||||
ISKra4 | 1400–3700 | 9 | GGG | 1 or + * | — | ||||
IS630 | — | 1000–1400 | 2* | — | Y | 1 or 2 | ORFAB | DDE | cut-and-paste |
IS982 | — | 1000 | 3–9 | AC | Y | 1 | — | DDE | — |
IS1380 | — | 1550–2000 | 4–5 | CC | Y | 1 | — | DDE | — |
ISAs1 | — | 1200–1500 | 8–10 | CAGGG | Y | 1 | — | — | — |
ISL3 | — | 1300–2300 | 8 | GG | Y | 1 | — | — | — |
Tn3 | — | >3000 | 0 | GGGG | Y | >1 | — | DDE | co-integrate |
ISAzo13 | — | 1250–2200 | 0–4 | Ga/g | Y | 1 | — | — | — |
IS110 | — | 1200–1550 | 0 | — | N | 1 | — | DEDD | — |
IS1111 | — | — | — | Y* | — | — | — | — | |
IS91 | — | 1500–2000 | 0 | — | N | 1 | — | HUH/Y2 | rolling-circle |
IS200/IS605 | IS200 | 600–750 | 0 | — | 0 | 1* | — | HUH/Y1 | peel-and-paste |
IS605 | 1300–2000 | — | — | — | 2* | — | HUH/Y1** | ||
IS607 | — | 1700–2500 | 0 | — | N | 2* | — | Serine** | — |
ISNCY * | IS892 | 1600 | 0–8 | CTAG | Y | 2 | ORFAB | — | — |
ISLbi1 | 1400–1500 | 5 | — | Y | 1 | ||||
ISMae2 | 1400–2400 | 9 | CAG | Y | 1 | ||||
ISPlu15 | 800–1000 | 0 | — | N | 1 | ||||
ISA1214 | 1000–1200 | 8–12 | — | Y | 2 | ||||
ISC1217 | 1200 | 6–8 | TAG | Y | 1 | ||||
ISM1 | 1300–1600 | 8–9 | — | Y | 1 | ||||
IS1202 | 1400–1700 | 5 | TGT | Y | 1 | — | DDEQ | — | |
ISDol1 | 1600–1900 | 6–7 | — | Y | 1 | — | DDE | — |