TnCentral:
a Prokaryotic Transposable Element Database
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TnCentral
nucleotide
blast
Blast program:
blastn
blastp
Enter a sequence here:
Paste
nucleotide
Example
Clear
Or, upload file (Fasta format):
Submit
warning
Please provide either a sequence or a fasta file.
Algorithm parameters
Database
TnCentral
INTEGRALL
ISFinder
N° of hits to display
10
25
50
100
Expect threshold
10
1
0.1
0.01
0.001
0.0001
0.00001
0.000001
0.0000001
Word size
Composition-based?
Yes
No
Choose filter
Low complexity
Mask for lookup table only
Mask for lower case letters
Match/Mismatch scores
1,-1
1,-2
1,-3
1,-4
2,-3
4,-5
Matrix
PAM30
PAM70
BLOSUM80
BLOSUM62
BLOSUM45
Gap costs
Retrieve blast result
Please type a valid Job ID
Looks good!
Retrieve
Other Sequence Search Services:
Isfinder
CARD
Toxin/Antitoxin
NCBI
