Mobile element type:
Transposon
Name:
TnXo19
Synonyms:
Tn7217
Accession:
TnXo19-KR071788
Family:
Tn3
Group:
Tn4651
First isolate:
Yes
Partial:
ND
Evidence of transposition:
Yes
Host Organism:
Xanthomonas oryzae pv. oryzicola GX01
Date of Isolation:
2015
Country:
China
Molecular Source:
plasmid pXOCgx01
| Name | Coordinates | Direction | Length | Sequence |
|---|---|---|---|---|
| IRL | 1-47 | + | 47 | GGGGTTCAGC CGACATACGT GTAAAAATAG CTCACAGAAT TCTATTT |
| IRR | 18721-18767 | - | 47 | GGGGTTCGGC CGACATACGT GTAAAAATGG CTCACAAAAT CGGATTT |
| Name | Associated TE | Coordinates | Orientation | Length | Sequence |
|---|---|---|---|---|---|
| res_acc_IR2 | TnXo19 | 11804-11812 | + | 9 | TACCATGTA |
| res_core_IRR | TnXo19 | 14531-14538 | + | 8 | CGGGCCGT |
ORF Summary
| Name | Associated TE | Coordinates | Orientation | Class | Subclass |
|---|---|---|---|---|---|
| czcC | TnXo19 | 1919-2305 | + | Passenger Gene | Heavy Metal Resistance |
| czcB | TnXo19 | 2302-3543 | + | Passenger Gene | Heavy Metal Resistance |
| czcA | TnXo19 | 3553-6684 | + | Passenger Gene | Heavy Metal Resistance |
| hupE_ureJ | TnXo19 | 6681-7412 | + | Passenger Gene | Heavy Metal Resistance |
| WP_150411558.1 | TnXo19 | 7427-8083 | + | Passenger Gene | Hypothetical |
| yfiS | TnXo19 | 8448-9782 | + | Passenger Gene | Heavy Metal Resistance |
| secC | TnXo19 | 10045-10671 | - | Passenger Gene | Heavy Metal Resistance |
| tnpT | TnXo19 | 10718-11809 | - | Accessory Gene | Resolvase |
| AAA ATPase 1 | TnXo19 | 11963-13624 | + | Passenger Gene | Other |
| AAA ATPase 2 | TnXo19 | 13602-14699 | + | Passenger Gene | Other |
| tnpS | TnXo19 | 14738-15706 | + | Accessory Gene | Resolvase |
| tnpA | TnXo19 | 15716-18676 | + | Transposase |
ORF Details
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | czcC | CzcC | TnXo19 | 128 | 1919-2305 | + |
|---|
| Class: | Passenger Gene | ||||||||||
| Subclass: | Heavy Metal Resistance | ||||||||||
| Target: | Cobalt||Zinc||Cadmium | ||||||||||
| Protein Sequence: | MSVSVPLGNR RRSDYSVAEA DADLSALKAR TEATRIERRQ QLFDRYQAMQ QAQSEVTSLR QRMLPKAEDA VRLTRRGFEA GRFSFLALMQ AEKTLFDLRE RQVDAAARYY TLLVEVERLT APVSDRIP |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | czcB | CzcB | TnXo19 | 413 | 2302-3543 | + |
|---|
| Class: | Passenger Gene | ||||||||||
| Subclass: | Heavy Metal Resistance | ||||||||||
| Target: | Cobalt||Zinc||Cadmium | ||||||||||
| Protein Sequence: | MKRYALIMLF PLLLSACGGE SSADKKAGEV QGTEQAAADY ERGPHRGRML RDGDFALEVT VYETNTPPHF RLYAYRNDKQ IAPAEVTPTI MLKRLDGEVN TFAFKPEKDY LAATTEVVEP HSFDVKVTAA SAGKSHHWSY ASYEGRTTID PQAAKDAGVA VETAGAATIR DTVQLMGTIA VDANRFAAVK ARFPGIVRNV PVQVGQRVSA GATLVTIEGN DSMRTYAVTA PFDGIVIARN TNVGDFAGDN TLVELANLAQ VWVDLRAIGT DAERLAPGQS VTVRSATSGV ESDAKVVSLL PLATAGQSVI ARVSLPNPEG KWRPGMTVSA EVTVASDEVP LAVKESGLQR FRDFTVVFAQ VGDTYEVRML ELGRRDGHYA EVLGGLKPGA SYVSEQSYLI RADIEKSGAS HDH |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | czcA | CzcA | TnXo19 | 1043 | 3553-6684 | + |
|---|
| Class: | Passenger Gene | ||||||||||
| Subclass: | Heavy Metal Resistance | ||||||||||
| Target: | Cobalt||Zinc||Cadmium | ||||||||||
| Protein Sequence: | MLEKIIRASI AHRWLVLLLV LGLSALGIWN YSRLPIDAVP DITNVQVQIN TEAPGYSPLE AEQRVTFPVE TALAGLAKLE YTRSISRYGL SQVTVVFEDG TDIYFARQQV AERLQQAASA LPEGLEPSLG PVATGLGEIF MYTVEAEPGA EQTWTPKALR TLQDWVVRPQ MRHLKGVTEV NTVGGYVRQF HITPDPTKLQ AYGLTLQDVL DAVGRSNANV GAGYIERAGE QYLIRVPGQV TGIDGLRKIV VATRDGLPLR IGDVAQVLEG SELRTGAATK DGKEVVLGTA FMLIGENSRE VAQRTAAKLQ EIDKTLPEGV RVHPVYDRTE LVDRTIETVR KNLLEGALLV IVVLFLLLGN LRAALITAAV IPLTMLLTIS GMVQNRVSAN LMSLGALDFG LIVDGAVIIV ENCLRRFGER QHALDRLLTR QERFELAASA STEVITPSLF GLFIIAAVYI PIFALSGVEG KMFHPMALTV VIALTGAMML SLTFVPAAVA QFVTGKVSEK ETRAMRSVSR FYAPLLDKVM HARSWVVAGA AVLTVLAGLL ASRLGTEFIP NLDEGDIAMH ALRIPGTSLS QAIGMQRQLE ARIKQFPEVD EVVAKIGTAE IATDPMPPSV ADTFIMLKDR SQWPDPRKSK VELVAELEKA VRAIPGNNYE FTQPVQMRMN ELIAGVRAEV AIKLYGDDLE QLTAIGGQIE KVASTIDGNA DVKLEQVTGL PLMTITPDLD ALARYGISVQ DMQQTISVAM GGKSVGQVFE GDRRFDIVVR LPEMMRQDPR TLASLPVAVP AAGEGGRIYV PLGQLARVEI APGPNQVSRE NGKRRVVITS NVRGRDLGSF VQELRERVAQ EVTMPEGYWV EYGGTFEQLM SASRRLSVVV PVVLVMIFGL LFMAFGSGKD AAIVFSGVPL ALTGGVLALA LRGIPLSISA GVGFIALSGV AVLNGLVMIS FIHNLRQEGM LLEPAIREGA LTRLRPVLVT ALVASLGFLP MAMNVGAGAE VQRPLATVVI GGIVSSTLLT LLVLPALYRL VHRSAASTHG ERA |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | hupE_ureJ | HupE_ureJ | TnXo19 | 243 | 6681-7412 | + |
|---|
| Class: | Passenger Gene | ||||||||||
| Subclass: | Heavy Metal Resistance | ||||||||||
| Target: | Cobalt||Zinc||Cadmium | ||||||||||
| Comment: | membrane protein | ||||||||||
| Protein Sequence: | MKAPHVSSMK VVLLRLWQKP VAALAMLAMS LVSAAAIAHG VSEGDQAFLE DSSGPQLVAF TYLGAKHMFT GYDHLLFLLG VVFFLYRMKD VGIYVTLFAV GHSITLLMGV LGGFHVNPYI IDAIIGLSVV YKALDNLGAF RRWLGFQPNN KAAVLIFGLF HGLGLATKLQ DFSLSPDGLV ANMIAFNVGV EIGQLLALGA ILLVMGFWRR SPLFARQAFG ANTLLMSAGF LLIGYQLTGY FVS |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | WP_150411558.1 | WP_150411558.1 | TnXo19 | 218 | 7427-8083 | + |
|---|
| Class: | Passenger Gene | ||||||||||
| Subclass: | Hypothetical | ||||||||||
| Protein Sequence: | MSITLNQPLP STARLLRATL LAAGVAAVLL VTVVMPAEYN IDPLGTGRLL GLTKLSVSST EAETAASPAP LMPAAPGDHS EANILLAQKA KTAFGENKGQ TLDAAATALT NGDLRRDTLS VTLPPGKGAE IKAHLKQGAG VVYRWKASGD VAVDMHGERP DVKGAWTSYS VEAAQRQAEG TFIAPFDGTH GWYWQNRTAQ PVDVAVEVVG FQADLYRP |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | yfiS | YfiS | TnXo19 | 444 | 8448-9782 | + |
|---|
| Class: | Passenger Gene | ||||||||||
| Subclass: | Heavy Metal Resistance | ||||||||||
| Target: | Cobalt||Zinc||Cadmium | ||||||||||
| Comment: | MFS transporter | ||||||||||
| Protein Sequence: | MIEVLSNSVF RRLFVAQVVA LVGTGLATVA LALLAYDLAG AQAGAVLGTA LAIKMMVYVT LAPVSAAVVP PSLRKPALIA LDLIRAAAAL SLPFVTAVWQ VYILIALLQS ASACFTPLFQ SLIPEILKEE RKYTRALSLS RLAYDLESLL SPALAAALLT LISFHGLFVG TSAGFVLSAL LVLSTTLPLI ADKRGEEGPY ARAIRGMRIY LRTPRLRGLL ALNLVAAAGG AMVFVNTVVV VRSVLHGGDR EVAWALAAFG AGSMLVALLL PRVLDRVPDR RVMLGAAAAM CGILVTLLAA WLAERGAIGW AVLLPVWTLL GMAYAGLVTP GGRLLRRSAE SADLPFLFAA QFSLSHVCWL IAYPLAGVVG ARLGMPVTIA ALSVLALAGV IVAWRVWPKH DPDELTHRHD DLPEDHPHLI EHRASNGGHR HRYVIDPLHE HWPQ |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | secC | SecC | TnXo19 | 208 | 10045-10671 | - |
|---|
| Class: | Passenger Gene | ||||||||||
| Subclass: | Heavy Metal Resistance | ||||||||||
| Target: | Cobalt||Zinc||Cadmium | ||||||||||
| Comment: | zinc chelator | ||||||||||
| Protein Sequence: | MRAVTTTPPE ITRAVRRLTD SVVRGAEPVY LSVQPEADAI VHECFPNVQA KIARDGGQML CGWQLWEWPH VLVEAEFHAV WVSPAREMVD ITPKPEGETR ILFVPDPRRR YEGLAIDNVR MPLRDDLLIR HFIQMSEAIV RVMNRGERVS QYGHLSIPAD EIQPLLQARD FLGQSLGAGL REHTSCLCGS GSKYKRCHGA QVEAFFRR |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | tnpT | TnpT | TnXo19 | 363 | 10718-11809 | - |
|---|
| Class: | Accessory Gene | ||||||||||
| Subclass: | Resolvase | ||||||||||
| Protein Sequence: | MVCNTLRNKQ ERRMARSGLY KSDVQRARDS LRVEGKHPSV DAVRVALGNT GSKTTIHRYL RELEEEEGQG VGTKIAVSDA LQDLVARLAE RLHAEAEAVV AQAQGRFQAE LRERTQALEQ ARQEAGNLSM QLQHTETALH AERQACETAM SNLAGRTTEL AQLEERISGL TARLAEHESH ARSLEQKHEH AREALEHYRT SVKDQREQEQ RRHEHQVQEL QVALRQANEA LTTKNHDLVQ LNRENGQWLE RHTRLERELA QVRQTVETQQ DELDTLRLTA AEYQALQVRW GQDAQNLEAI RQELAQARAD LTQERERREH AEADTLRATV RLSTLEPLLA QLQPASTGGK NSKRISSEET PAP |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | AAA ATPase 1 | AAA ATPase 1 | TnXo19 | 553 | 11963-13624 | + |
|---|
| Class: | Passenger Gene | ||||||||||
| Subclass: | Other | ||||||||||
| Protein Sequence: | MAQSGKEAGR GRGHAPPLSS LAIKGLCMPI ERVVIDNFKS FRHLDLPLNP HMNLVVGDNE VGKSTLLEAI HAVVTGQLHG RNLAYELTPY LFHQPTVHEY LAALQAGTPA SPPRISIEAY LGRDAALASL RGTNNSLGLD TAGIRLLVEL NDDYREEFNA YLQQHQGVVS LPVEYYTVRW YSFAHNGVTA RSIPFDSTII DTHGIKTLSG ADRYIAGIIE QALTPAQRVS LSLSFRRMRQ SFSEEADVAA INAYLTEHTG DISHRALTVG VDTSPRSTWE TSLSPYLDEL PFTQAGKGEQ SAVKMKLAMH AAGAAHVLLI EEPENHLSFS SMTQLIDKIA ALSATQQVVI ATHSSFVLNK LGVDNVILFS AQGQMKLDQL PSDTHDYFMK LPGHDTLRLI LAKQAILVEG PSDELIVQRA YCDHHGVAPL ARGVDIISVK SLAFKRFLQI AERLHIQAKV ITDNDGDIAV VQERYADYPN AIYYDSDESA PSLEEQLINA NSLAVLNTVL GKSFADEVAL LKYMKGHKTD TALAIFNSPH SIRFPDYVQR AIT |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | AAA ATPase 2 | AAA ATPase 2 | TnXo19 | 365 | 13602-14699 | + |
|---|
| Class: | Passenger Gene | ||||||||||
| Subclass: | Other | ||||||||||
| Protein Sequence: | MSSVPSPNRV LLSAAGSGKT TLLVRQALER PLRRIAIVTY TLENLEEIRR SFEMHAGAVP PNVTLHSWYG FLLRECIRPY QAALCPQPRI ETILFVDGRT DNRAPRSQVA RHYLAGDRMY SDRAADFAVR CDELTQGHVM ARLSDMYDEL YIDEVQDLAG YDLDLVERLL KSDIDITLVG DTRQATYATN YAPRHSQYRG PNLAALFQVW ESDGLCQLDQ RLISLRCVQA LCNLADALYP QMPRTKSGNG EVTGHDGIYL VAPGHVAAYM QEFAPTVLRY DRRQACDGLL AVNFGQSKGR TYSRVLIFPN GPLTQYLRTA DASRITAPPK YYVAFTRARQ SVAFVYAGAC ALPGHQLYAP SGATP |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | tnpS | TnpS | TnXo19 | 322 | 14738-15706 | + |
|---|
| Class: | Accessory Gene | ||||||||||
| Subclass: | Resolvase | ||||||||||
| Sequence Family: | TyrosineSite-Specific Recombinase | ||||||||||
| Transposase Chemistry: | Tyrosine | ||||||||||
| Protein Sequence: | MADLEHYLDA ATRANTHRSY ASALRHFEVE WGGHLPATPD SVARYLADHA GQLATNTLRH RLAALAGWHR EHGFVDPTRA PLVRKVLKGI QTLHPSVEKQ AEPLQLIRLA QVDAWLAGAV TAAQERGDHA DALRHRRDRA LVLLGFWRGF RGDELIRVQV EHLRLVTGEG MTCFLPCSKG DRRAQGNTYK VPALSRLCPV TATWDWIAAA ELSEGPLFRG IDRWGHIADE ALHPNSLIPL LRRLLTCAGL PDAQDYSGHS LRRGFAGWAN ANGWDVKALM EYVGWRDVHS AMRYIDGGDP FARQRIEASL PETPVLPRPA TT |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | tnpA | TnpA | TnXo19 | 986 | 15716-18676 | + |
|---|
| Class: | Transposase | ||||||||||
| Transposase Chemistry: | DDE | ||||||||||
| Protein Sequence: | MASIERTAYP QFKRNPVVRE LVAAYTPTDA EVAFVAEYTR QPAHRLTLTI LLKTFQRLGY FPLLDEVPPA VVRHIRGALK LRVQVKPVSL GNASRYRYYR RIRQFLQVRA YSDGGLKITA RAVYEAAAVM DNPADLINVA IEHLVRDRVE LPAFSTLDRL TRRIRTLVNG RYFAQIQAQL TIDEKQRLED LLQVEEGRQK SPLHAIKRLP KRSSLQHFQE LIDHIGELGE LVGSELHLAG IPEIKRKHFA AEARALDASE LRKFRPAKRY AVLVCLIHRA RVQTRDDLAE MFIKRMGNIH NRGREELERL RARYREKTEA IVATMSDVVR VLDHHPGDTE AGREIRRLVN AHGGVQTLQA DCNAIAAHSG DNYLPLLWPF YKSHRATILR MVRMLDLAST TEDRSLIDAI ELILTQERTR GDWLDEPVDL AFTTQLWRKT IVHRTEQGEE RIHRRLFEVC VFSSLANELK SGDVAVRGSE TYADYREQLL PWEQCEPMLE DYCKQVGLPA TAVGFVNALQ SRLMQVAELT DQGYLENGQV VIGEDGIPVL KRSKAKEMSS GARALETAIL DRMPERSVIE ILCDVAYWTR WPRHFGPLSG SDAKIEQPTE RYVLTAFTYG CNLGPAQAAR HLRGAVSAHM LSFVNRRHVD ANKLAAACRD IINSYAGLQL PKCWGDGKSA AADGTKYDLY DQNLLASYHI RYGGYGGIAY HHVSDTYVAL FSHFIPCGVW EAVYIIDGLL KNTSDIQPDT VHADTQGQSL PVFGLSHLLG IQLMPRIRNW REYKFFRPDE DIRYEHIDAL FRDTVDWDLI ETHWKDLMQV VLSIKTGKIA ASTLLRKLGN YSRKNRLYQA FKALGSAVRT LFLLQYISNR ELREQITAST NKVEAYNGFA KYFFFGGEGV IADNDPVEQE KAVKYNDLVS NAVIFYNVVE QTRIMKALMR QGWKITREDV AFLSPYVTSH VKRFGDYLID VEAIPEPYEI ELALVA |
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1. Niu XN, Wei ZQ, Zou HF, Xie GG, Wu F, Li KJ, Jiang W, Tang JL, He YQ.
Complete sequence and detailed analysis of the first indigenous plasmid from Xanthomonas oryzae pv. oryzicola.. BMC Microbiol. 2015 Oct 24;15:233. doi: 10.1186/s12866-015-0562-x. PubMed ID:
26498126
.