Mobile element type:
Transposon
Name:
TnXax1.3
Synonyms:
Tn7209
Accession:
TnXax1.3-AY389509.1
Family:
Tn3
Group:
Tn4651
First isolate:
Yes
Partial:
ND
Evidence of transposition:
ND
Host Organism:
Xanthomonas euvesicatoria 75-3
Date of Isolation:
2003
Country:
| Name | Coordinates | Direction | Length | Sequence |
|---|---|---|---|---|
| IRL | 57-102 | + | 46 | GAGGGTCGGC AGGGATTCGT GTAAAAGACA GCCAAAAGTG AGCTAA |
| IRint | 895-933 | + | 39 | GGGGCATCAC GATTGTTTCG AGCCTCTGCC CAACTAAAG |
| IRR | 12349-12393 | - | 45 | GAGGGTCGAC AGGGATTTGT GTAAAAAACA GCCAAAATTG AGCTA |
| Name | Associated TE | Coordinates | Orientation | Length | Sequence |
|---|---|---|---|---|---|
| res_acc_IR2 | TnXax1.3 | 6048-6056 | + | 9 | TACCATGTA |
| res_acc_IR2 | TnXax1.3 | 6106-6119 | + | 14 | TCACGCGGGA TAAT |
| res_acc_IR1 | TnXax1.3 | 6125-6138 | - | 14 | TAAGGCGGGA TAAT |
ORF Summary
| Name | Associated TE | Coordinates | Orientation | Class | Subclass |
|---|---|---|---|---|---|
| xopC | TnXax1.3 | 928-3432 | - | Passenger Gene | Plant Pathogenicity |
| tnp | IS1595 | 3822-4784 | + | Transposase | |
| tnpT | TnXax1.3 | 4960-6015 | - | Accessory Gene | Resolvase |
| tnpS | TnXax1.3 | 6200-7474 | + | Accessory Gene | Resolvase |
| tnpA | TnXax1.3 | 7446-10472 | + | Transposase | |
| mltB | TnXax1.3 | 10605-11882 | + | Passenger Gene | Plant Pathogenicity |
ORF Details
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | xopC | XopC | TnXax1.3 | 834 | 928-3432 | - |
|---|
| Class: | Passenger Gene | ||||||||||
| Subclass: | Plant Pathogenicity | ||||||||||
| Protein Sequence: | MKTSSASKSH YTGQFPQGDL QPKTPIPVGR NSEIPKDAAL SAQLKGLRPL DRKPSKMPTS SSDLQAVNKM IAENRSNDVG KGQFLLSTQS LGSAERVDSQ NYHSRNESGK APLFFSEFAT EKPSLQSVKS LSQGKQDYYA VRHVGKRGRD LFTDEPIEGE NSKLGRLKTS PLLSTQSQGT RAIRAFAATA TIDKSRGEYV ARLHRHVVEA LGDEGGVVHL LRPTRDHYAE DSTLNFFTFC EQTELASSLN SLEAISAKKE DRKPIVFTDH KSLVGLSRTS RTEASPIGRL VQQPYFVTSD LKRGDKVVIT DDHIQAGGSM LAMEAAAKEA GVDVLALATL SAHPFSPQLT MSSEVSAFLD ETLAAWDPQG KVTERLAAIG MPREKLTNSE AMILIAYAID PASDSAILRF ESIQNNLFKR AHLHNVGIDP DAPDTLEQMQ KLSSMQEMAG TDSARHFVDD AKVLEGEHDS LIPILKMKPA SPDEIVKELD QVSLASRSSI QASEVKQVVV LDWDDCLRDE KGLNYKLMHN ALAITAREHA STLPELGDAV AVLHSKLNGA EPVDEEAPLL MKNQKDFSSY LMGRQSIYKR HIIEDFVRKM LPGISEHKAA SINNAVYSNF VREYKMLVKP EVSKKNYSRD VPFPDIELSL LPGAKEILEK SRNANSRVIL ISNRGHGDLE NEINHLGMMH YFDVVSGAEE VTLEKSHLPP SQMPEDLQKR LINSLNGSDE EALRATLSEA AIYAHPDSTT IERIDKKPDS TRLAESLERL SVQPNVPITS YGDQPSDIKQ LKSVAEPKSR VLKGVIVNAQ RDDVGREIDV DGVPTRVVSK ITEL |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | tnp | Tnp | IS1595 | 320 | 3822-4784 | + |
|---|
| Class: | Transposase | ||||||||||
| Transposase Chemistry: | DDE | ||||||||||
| Protein Sequence: | MSINAVQFQA GLSMPEFFAF YGTEAKCYRA LYTWRWPQGF RCPVCAGRVR SRFKRRAAIY YQCSACRHQT SLMAGTMFEG TKLPLRTWML ALHLLTSTKT NMAALELMRH LGVNYKTAWR MKHKIMQVMA EREATRKLAG FVQIDDAYLG GERNGGKAGR GSENKQAFLI AVQTDATFTA PRFVVIEPVR SFDNTSLQDW IARRLAPECE VYTDGLACFR RLEDAGHAHT TLDTGGGRAA TETAGARWLN VVLGNLKRAI SGVYHAIAQG KYARRYLGEA AYRFNRRFRL REMLPRLATA MMQSNPCPEP VLRAASNFHG |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | tnpT | TnpT | TnXax1.3 | 351 | 4960-6015 | - |
|---|
| Class: | Accessory Gene | ||||||||||
| Subclass: | Resolvase | ||||||||||
| Protein Sequence: | MARSGLYKSD VQRARDRLRA TGTHPSVDAV RVALGNTGSK TTIHRYLREL EEEEGQGVGA KMAVSDALQD LIARLAERLH SEADTVVAQA QARFQAQLQE RTQALEQARQ EAGSLRTQLQ RCETALQAER EAGDAARSEV ASCATELAQL EERIAGLTAR LAEHDAHAKS LEHKHEHARE ALEHYRTSVK DQREQEQRRH AHQVQELQVA LRQANEALTA KNHDLIQLNR ENGQWLERQT RLERELAQAR QRADAQQRER DALRLTAAEH QALQVRWTQD VHALEGVRAE LAAARTELVE ERQRREHAEA DTLRATVRLS TLEQLLARLR PVHSVGEPEN AISAGAMPAG R |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | tnpS | TnpS | TnXax1.3 | 424 | 6200-7474 | + |
|---|
| Class: | Accessory Gene | ||||||||||
| Subclass: | Resolvase | ||||||||||
| Sequence Family: | Tyrosine Site-Specific Recombinase | ||||||||||
| Transposase Chemistry: | Tyrosine | ||||||||||
| Protein Sequence: | VSSVKQYLEA ATRANTERAY AGAIRHFEVE WGGHLPATAE QVARYLAAYA GQLALNTLRH RLAALAQWHQ VHGFVDPTRA PVVRQVLKGI QTLHPSVEKR ATPLQLTLLA QVTTWLEDAA AAAQSRGDRA AELRHLRDRA LLLLGFWRGF RGDELTRLQV NHLRLVPGEG MTCFLPHSKS DRQHAGATYK VPALSRWCPV AATMTWVAAA ALHEGPLFRA VNQWGGIAAA PLHPNSLVPL LRRIFREAGL SSPNDYSGHS LRRGFAGWAN ANGWDVKALM EYVGWRDVHS AMRYLDGADP FARQRIEASL SPATPPLLAL AAPAPDPVPT TAVEATVTLT RFNSRVRGLA KAHRLIEQIC LQPHQAQRLN ADGTRYRLAI AAVDEAAFEE TIAMLLDEMH RIADNHQCFL AVALRDEAGG RHWD |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | tnpA | TnpA | TnXax1.3 | 1008 | 7446-10472 | + |
|---|
| Class: | Transposase | ||||||||||
| Transposase Chemistry: | DDE | ||||||||||
| Protein Sequence: | MKRAGAIGTE LSMTTLHETA YPRLKPDPTA KELQDIYTPT AAELQCVRNI ATGPATRLAL LLHLKLFQRL GYFTTLIEVP ERIVQHVAQT LGMRRVPADR LAGYDASGAK RGHLAQLRAF LNVCPLDAAG RDWLGTVAET AARTKHIVPD IVNVMLEELV HHRFELPAFS TLERIAIAAR ERVHDAHYRQ IADALSPTMR TLIDNLLLTP PGSHHSDWHT LKREPKRPTN KEVRHYLRHI QRLRILAEQL PPIDVSVPKL KQFRAMARAL DAAELAELVP IKRYALAAIF IRSQYRKTLD DAADLFIRLI QNLENTAQQK LIAYQLEHSK RADALIGQLR EILQAYQVEG TDTERVGAIA GVLVADIALL TAECDEHMAY AGRNYLPFLL APYGTLRPLL FNCLEIMGLR AASQDPSMER MIGAVLALRS QRRETIDAAS LGVATTDLTW LSSAWRKHVM PKALAAASPG WIHRKYFELA VLAQIKDELK SGDLYIPHGE RYDDYREQLV DEATLAQELD AYGEVSGVAT DAADFVQGLR TELTTLADAV DARFSDNLHA SMLDGRLVLK RLQGAQVTQA IATVDSAITD RLPPTSIVDV LVDTTRWLDL HVHFRPIAGT DARVDDLLRR VITTLFCYGC NLGPTQTARS VKGFSRRQIS WLNLKYVTDE TLDKAIVQVI NMYNKFELPG YWGSGKSASA DGTKWNVYQQ NLLSEYHIRY GGYGGIGYYH VSDKYIALFS HFIPCGIHEA VYILDGMLAN RSDIQPDTVH GDTQAQSFPV FGLAHLLGIN LMPRIRNIKD LVFSRPEPGR TYENIQALFG DSIDWTLIET HVHDMLRVAI SIKLGKITAS TILRRLGTYS RKNKLYWAFR ELGKAVRTLF LLRYIDDVEV RKTIHAATNK SEEFNGFVKW AFFGGEGIIA ENIQHEQRKI VRYNQLVANL IILHNVEQMT RVLAELRDEG RTISPEILAG LSPYRTSHIN RFGDYTLDLK RQVEPIDFSR RILAATTR |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | mltB | MltB | TnXax1.3 | 425 | 10605-11882 | + |
|---|
| Class: | Passenger Gene | ||||||||||
| Subclass: | Plant Pathogenicity | ||||||||||
| Target: | cell wall | ||||||||||
| Comment: | Membrane-bound lytic murein transglycosylase B precursor | ||||||||||
| Protein Sequence: | MIMPSRLLRL TLGVSVCVAS TSVAAQAIAP ETTASSATDA GGQQQDPAPT ASFEQWLADF RQRALAAGIG ATTLDNALAG VTPDPSVHEL DQRQPEFTQY LWDYLSARVT PSAIQEGQQL LIRQHALFEK LRQHYGVDPG ILTAIWSMES GYGKQIGDFY VIRSLATLAH EGRRTTYGNT QLLAALQILQ TEKSIDRSQL VGSWAGAMGQ TQFIPSTYRD YAVDEDGDQK RDVWNSKADA LGSAANYLKQ NNWTSAVPWG QEVQLSAGFD YAQADLTIKK TVAEWQRLGV APRRPIAPAL AQQLASVLLP TGYRGPAFLV FDNFRSILRY NNSTAYALAV GLLADGYAGR AGVKQPWPKD DPPLNSTAQI TELQQRLTDK GFDVGGIDGV LGAQTRQGIR AFQRSQQLPQ DGYASTSLLA RLRAA |
||||||||||
| TnCentral Accession | TE Name | Type | Coordinates | Strand | Length |
|---|---|---|---|---|---|
| ISXca5_p-CP002914 | ISXca5_p | insertion sequence | 253-804 | + | 552 |
| IS1595-AF249895 | IS1595 | insertion sequence | 3731-4802 | + | 1072 |
| Name | Associated TE | Coordinates | Direction | Length | Sequence |
|---|---|---|---|---|---|
| IRL | IS1595 | 3731-3754 | + | 24 | CCTGATTAGC CCTGACCTTC AGCC |
| IRR | IS1595 | 4779-4802 | - | 24 | CCTGATTAGC CCTGACTCTC AGCC |
1. Noel L, Thieme F, Gabler J, Buttner D, Bonas U.
XopC and XopJ, two novel type III effector proteins from Xanthomonas campestris pv. vesicatoria.. J Bacteriol. 2003 Dec;185(24):7092-102. doi: 10.1128/JB.185.24.7092-7102.2003. PubMed ID:
14645268
.