Mobile element type:
Transposon
Name:
TnXax1.1
Synonyms:
Tn7207
Accession:
TnXax1.1-NC_016053
Family:
Tn3
Group:
Tn4651
First isolate:
Yes
Partial:
ND
Evidence of transposition:
Yes
Host Organism:
Xanthomonas arboricola pv. pruni CFBP 55306
Date of Isolation:
2011
Country:
Molecular Source:
plasmid pXap41
| Name | Coordinates | Direction | Length | Sequence |
|---|---|---|---|---|
| IRL | 1-46 | + | 46 | GAGGGTCGGC AGGGATTCGT GTAAAACACA GCCAAAAGTG AGCTAA |
| IRR | 23505-23552 | - | 48 | GAGGGTCGGC AGGGATTCGT GTAAAAAACA GCCAAAAATG AGCTAACT |
| Name | Associated TE | Coordinates | Orientation | Length | Sequence |
|---|---|---|---|---|---|
| res_acc_IR2 | TnXax1.1 | 15695-15703 | + | 9 | TACCATGTA |
| res_acc_IR2 | TnXax1.1 | 15752-15765 | + | 14 | TCACGCGGGA TAAT |
ORF Summary
| Name | Associated TE | Coordinates | Orientation | Class | Subclass |
|---|---|---|---|---|---|
| tnp | TnPsy42 | 1073-1288 | + | Transposase | |
| WP_004666662.1 | TnPsy42 | 1356-1733 | + | Passenger Gene | Hypothetical |
| ARO44905.1 | TnPsy42 | 1688-1882 | - | Passenger Gene | Hypothetical |
| PIN | TnPsy42 | 1894-2304 | - | Passenger Gene | Toxin |
| abrB | TnPsy42 | 2286-2537 | - | Passenger Gene | Antitoxin |
| tnpR | TnPsy42 | 2717-3289 | + | Accessory Gene | Resolvase |
| tnpA | TnPsy42 | 3246-6347 | + | Transposase | |
| repA2 | TnXax1.1 | 6754-8247 | - | Passenger Gene | Other |
| parC | TnXax1.1 | 8426-8791 | - | Passenger Gene | Other |
| WP_014125906.1 | TnXax1.1 | 9211-9585 | - | Passenger Gene | Hypothetical |
| M48 family metalloprotease | TnXax1.1 | 9582-10226 | - | Passenger Gene | Other |
| WP_014125904.1 | TnXax1.1 | 10223-10726 | - | Passenger Gene | Hypothetical |
| WP_014125902.1 | TnXax1.1 | 11650-12066 | - | Passenger Gene | Hypothetical |
| WP_014125901.1 | TnXax1.1 | 12170-12664 | - | Passenger Gene | Hypothetical |
| parA | TnXax1.1 | 12806-13378 | - | Passenger Gene | Other |
| WP_014125899.1 | TnXax1.1 | 13570-14607 | + | Passenger Gene | Hypothetical |
| tnpT | TnXax1.1 | 14595-15662 | - | Accessory Gene | Resolvase |
| tnpS | TnXax1.1 | 15846-17120 | + | Accessory Gene | Resolvase |
| tnpA | TnXax1.1 | 17092-20118 | + | Transposase | |
| mltB | TnXax1.1 | 20250-21527 | + | Passenger Gene | Plant Pathogenicity |
| avr | TnXax1.1 | 21534-22682 | + | Passenger Gene | Plant Pathogenicity |
ORF Details
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | tnp | Tnp | TnPsy42 | 71 | 1073-1288 | + |
|---|
| Class: | Transposase | ||||||||||
| Sequence Family: | IS3_family | ||||||||||
| Transposase Chemistry: | DDE | ||||||||||
| Comment: | 99.5% identical to reference sequence TnCentral: tnp(TnPsy42)||similar to TnXac3_aa3 rve_3 superfamily|| BLAST ID: NAS61029.1 | ||||||||||
| Protein Sequence: | MGHCGDNAAC EGFFGLLKRE RIRRQIYPTK DAARAEVFDY IEMFYNPNRR HGSTGDLFPV EFERRYAQRG S |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | WP_004666662.1 | WP_004666662.1 | TnPsy42 | 125 | 1356-1733 | + |
|---|
| Class: | Passenger Gene | ||||||||||
| Subclass: | Hypothetical | ||||||||||
| Protein Sequence: | MGDKTDKNTI AWLAQPEEHD YPAAQSYLNL LYDDAHCAKL VRKLHAAPMS AFKAKDILRA SGLSPLGMSN AHVERDLKKI QSGTALSPLL LVRQEGQRTV VADGYHRLCA VYSFDEDASI PCKIV |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | ARO44905.1 | ARO44905.1 | TnPsy42 | 64 | 1688-1882 | - |
|---|
| Class: | Passenger Gene | ||||||||||
| Subclass: | Hypothetical | ||||||||||
| Protein Sequence: | MNEFRRLATK IDQHMKQLAT QGVSEAHSII NHMMGYVPDN RAAGLGRGSA HTILQGIEAS SSKL |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | PIN | PIN | TnPsy42 | 136 | 1894-2304 | - |
|---|
| Class: | Passenger Gene | ||||||||||
| Subclass: | Toxin | ||||||||||
| Sequence Family: | PIN (Pfam:PF01850) | ||||||||||
| Target: | single stranded RNA | ||||||||||
| Comment: | tRNA(fMet)-specific endonuclease | ||||||||||
| Protein Sequence: | MGRQAMKVAV DTNVLVRAVV RDDPAQADVA AAVLTDAELI AVALPCLCEF VWVLMRVYGF QQSDAADAIR ALLDAANVEV NRPAVEAGLL VLDAGGDFAD GVIAYEGNWL GGETFVSFDK KAVTLLSVQG QSARLL |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | abrB | AbrB | TnPsy42 | 83 | 2286-2537 | - |
|---|
| Class: | Passenger Gene | ||||||||||
| Subclass: | Antitoxin | ||||||||||
| Sequence Family: | abrB/mazE (PDB:2MRN,Pfam:PF04014) | ||||||||||
| Comment: | 99.6% identical to referencesequence (TnCentral:abrB (TnPsy42)) | ||||||||||
| Protein Sequence: | MTTLTVTARG QVTFRKDVLQ HLGIRPGDKI ELDLLPDGRG VLKAARPAGT IASFVGLLAG KTQKVATIEE INEAAAQGWA GKQ |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | tnpR | TnpR | TnPsy42 | 190 | 2717-3289 | + |
|---|
| Class: | Accessory Gene | ||||||||||
| Subclass: | Resolvase | ||||||||||
| Sequence Family: | Serine Site-Specific Recombinase | ||||||||||
| Transposase Chemistry: | Serine | ||||||||||
| Protein Sequence: | MALIGYARVS TAEQDTALQT DALRKAGCER VFEDTASGAK ADRPGLADAL AYLRNGDVLA VWRLDRLGRS MPHLIETIGA LEARGVGFRS LTEAIDTTTP GGRLIFHVFG ALGQFERDLI RERTKAGLSA AAARGRKGGR KPVITADKLQ QARKHIANGL NVREAATRLK VSKTALYAAL QSTSARDLQK |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | tnpA | TnpA | TnPsy42 | 1033 | 3246-6347 | + |
|---|
| Class: | Transposase | ||||||||||
| Transposase Chemistry: | DDE | ||||||||||
| Protein Sequence: | MQLCNPPAHE ISKNDNRLTR SGTVMAAKSE RLTILSDAEQ EALYGLPDFD DTQRLEYLAL TDAELALASS RPGMPAQVYC VLQIGYFKAK HAFFRFDWNE VEDDCAFVLR RYFTDEPFEC KAVTKHEHYT QRERIAELFC YLPWVASFLP QLAQQAALIV RRDVIPGFIA TELIVWLNEH KIIRPGYTTL QELVSEALSA ERRRLGGLLA EVLDDPARAA MAQLLVRDDT LSQLAALKQD AKDFGWRQMA REREKRATLE PLHSIAKALL PKLGVSQQNL LYYASLANFY TVHDLRNLKA DQSHLYLLCY AWVRYRQLSD NLVDAMAYHM KQLEDQSSAG AKQSFVAEQV RRQQDTPQVG RLLSLYIDDS VPDPTPFGDV RQRAYKIMPR DALLTTAQRM SAKPVSKLAL HWQAVDGLAE RIRRHLRPLY VALDLAATNP DSPWLVALAW AKGVFAKQQR LSQRPLAECP AATLPKRLRP YLLTFDADGK STGLHADRYE FWLYRQVRKR FQSGELYLDD SLQHRHFSDE LVSVEEKADA LAKMDIPFLR QPVDAQLDAL AAELHLQWLA LNRALKQGKL THLEYDKATH KLIWRKPKGE NQKAREKAFY EQLPFCDVAD VFRFVDGQCQ FLSALTPLQP RYAKKVADAD SLMAVIIAQA MNHGNQVMAR TSDIPYHVLE SAYQQYLRHA TLHAANDCIS NAIAQLPIFP YYSFDLNTLY GAVDGQKFGV ERPTVKARYS RKYFGRGKGV VAYTLLCNHV PLNGYLIGAH DYEAHHVFDI WYRNTSDIVP TAITGDMHSV NKANFAILHW FGPRFEPRFA NLDDQLKELY CADDLAQYEN CLIRPIGKID RDLIIDEKPN IDRIVATLGL KEMTQGTLIR KLCTYTAQNP TRRAIFEFDK LVRSIYTLRY LRDPQLERNV HRSQNRIESY HQLRSTVAQV GGKKELTGRT DIEIEISNQC ARLIANAVIY YNSAILSRLL TKYEASGNAN ALALITQMSP AAWRHILLNG HYTFQSDGKM LDLDALVAEL ELG |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | repA2 | RepA2 | TnXax1.1 | 497 | 6754-8247 | - |
|---|
| Class: | Passenger Gene | ||||||||||
| Subclass: | Other | ||||||||||
| Function: | plasmid replication initiation protein | ||||||||||
| Protein Sequence: | MGTKTQAQLA LFSIDDEAQT YHDAGRTGFF SLLVDQRGEK RQSSHKLTDM PAVLGLIDKD RDTWMTQAEF MRPNRRVVNL LRIGLLFADI DTYRQPWAVE RTPEQLAAAV LFHCADEGLP TPSLIVYSGR GLQAKWLMDG TIPRQALPRW NACQRYLIDR LAALGADPQA KDASRVLRLV GTVNTKSGNI CRVVHVESGQ DGHPIRYNFE YLAEALLPKA RWTIEQQRQD RADRRERQQL RLLPGGKSDN LRGFSGRQLA WDRLEDLRTL ATLRGGVREG ERMQHLFWRL NFLLLSGATH SGQMYHEAAA LAGELDAGWN YRSKELMTLY SKAKAYEAGE KVTLGDKEFA PLYTPKNDTL INLFQITSDE QAQLRTIIGA DMARERDRKR HEAKRRAAGA VDRETYLDAA QAKRKQAQAL KAEGLSVRVI AQRMGVSVGS VAGYLKAPQE RSRSVRITAD QSSIGAGIAG TADSAQHDVQ SPSVLLMAEP RGRDLRA |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | parC | ParC | TnXax1.1 | 121 | 8426-8791 | - |
|---|
| Class: | Passenger Gene | ||||||||||
| Subclass: | Other | ||||||||||
| Comment: | putative partitioning-associated protein ParC | ||||||||||
| Protein Sequence: | MGHDPAQIQQ CGDSPVIAIE PKALQEAADA HLVRGAEIRA AEDGEGLVVI VDLGEDRRVV GLARNRGVRY FQSFDGAAAL LLERGISKFA ANTVGWTPRT QPKWMKHRGH NCEGLIAAAS I |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | WP_014125906.1 | WP_014125906.1 | TnXax1.1 | 124 | 9211-9585 | - |
|---|
| Class: | Passenger Gene | ||||||||||
| Subclass: | Hypothetical | ||||||||||
| Protein Sequence: | MNDISRNLRR ASIAVAGFGL GGLIFAAVFA RPQLWETPFF LTGWLPIAGV MFYGGIAACR SAPRAGADDT RPPAPPVARF LRLQLMGVVG VGLTGAAILL VAIGGSLALL ALIVAAALYL VIFS |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | M48 family metalloprotease | M48 family metalloprotease | TnXax1.1 | 214 | 9582-10226 | - |
|---|
| Class: | Passenger Gene | ||||||||||
| Subclass: | Other | ||||||||||
| Protein Sequence: | MTTATRLQLQ ATVDAIAAHA YIAPPRVRLW RHRNARYNAL THTIVVSQTL ALTLDANQRY TLAHEVGHAQ RRATMLKRVG SYFWPPALAL VVGAMTAAAV GSFAAKPLAI TAPQTLCALV LGIVAAVVAG QLAERTDRRA RRDSYAEELR ADRFANRMAG DPAAMTAVLH ACARIEDGGE LGAEAARRIA FARDSSTRTM RRLPICCTTH LEPR |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | WP_014125904.1 | WP_014125904.1 | TnXax1.1 | 167 | 10223-10726 | - |
|---|
| Class: | Passenger Gene | ||||||||||
| Subclass: | Hypothetical | ||||||||||
| Protein Sequence: | MIEDQTSMFD RSIMTSPISI TTLAALARSG MLRTVQLVGQ VGGYTVMVRV GQTEKQLTGQ RGEPRVFASL DTAAAQLLAL GVTVFEVLPA NYVRAPKVYR RGRPAALKAL AKIQREGKPA KSKPARKPAG AATVATAAKI LPSDRAQLKL PGLPRTRKAA RATSASP |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | WP_014125902.1 | WP_014125902.1 | TnXax1.1 | 138 | 11650-12066 | - |
|---|
| Class: | Passenger Gene | ||||||||||
| Subclass: | Hypothetical | ||||||||||
| Protein Sequence: | MQEEQITPLQ HNMRVLVHLS RHESYCDITF HNRDPLFGVR LSPALNAALM YGAGAQKMTE LFDRIETRSG AVFRAVDVWV IVEFPNGLPS DQDLSGVDLA DGDAEVAPGV SMRQMAKEVY RCGDDAEAEK MLRRILAA |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | WP_014125901.1 | WP_014125901.1 | TnXax1.1 | 164 | 12170-12664 | - |
|---|
| Class: | Passenger Gene | ||||||||||
| Subclass: | Hypothetical | ||||||||||
| Protein Sequence: | MEVNPPWTCD ECGKPILSVD DGWVEWLHGR SEPDNIQRSA HHLRLVHHRH ASPNADRKNA CYHDEDRWFA TKRYTVADLP LSSFVGSDGL ITLLSFLYDK RFSEESEVLE LIKRLHVPNY EAARHYFEAA IANGVFEPGS APSYYDQEEM RAVLNWAQEQ QEQA |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | parA | ParA | TnXax1.1 | 190 | 12806-13378 | - |
|---|
| Class: | Passenger Gene | ||||||||||
| Subclass: | Other | ||||||||||
| Function: | site-specific recombinases, DNA invertase Pin homologs | ||||||||||
| Comment: | might be parB | ||||||||||
| Protein Sequence: | MRAGQLGQAS RGAGDGRIEP DGMRSAGSRS DNSSIIRRLG KIWLFFVSIP ADPRISRLPL VEAERLVASI RAKGARLAVP GVVDFSEVAA EAEGVAKVVL ESMQDMLLRI ALQIARDDYE DRRERQRQGI ELAKARDKYR GRPADAAVHA RIVALRGRGE TIANTARLAG ASVTTVKRVW AAHCAQGHEN |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | WP_014125899.1 | WP_014125899.1 | TnXax1.1 | 345 | 13570-14607 | + |
|---|
| Class: | Passenger Gene | ||||||||||
| Subclass: | Hypothetical | ||||||||||
| Protein Sequence: | MRKFKSKYML GACIVGSIVS AGAAAQVAAI NNTGRAEAMS AWETTLKHEA PAMEGCFSST FPDMGWQAVR CGAPPKLVMK PRHVASGNVR TTTDNRVLIT GNGDDYAART GRLTHSAVGS FPSVSGVTTG VVQYSLQINT DNDSNPAACA QFGFSSCKTW QQYVYSSDAD EDSSNGFDPV IFIESWVYAD STSEYDAAGC PSGWDAYEGN ACVINSESVR VPLVPVSGIA GVKLTGSATS GGVDTVSFSV NGRAYSVSQR ASTVDINKIW RLTEFNIFGN GARTQTVSFN RGSHVTVNVA VNDGTTNAPT CLGNAGKTFE QNNLTRGSCS VFGGASPGIS FPQSN |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | tnpT | TnpT | TnXax1.1 | 355 | 14595-15662 | - |
|---|
| Class: | Accessory Gene | ||||||||||
| Subclass: | Resolvase | ||||||||||
| Protein Sequence: | MARSGLYKSD VQRARDSLRA TGKNPSVDAV RVALGNTGSK TTIHRYLREL EEEEGQGVGA KMAVSDALQD LVARLAERLH GEADTVVAQA QARFQAQLQE RTQTLEQARQ EADSLTTQLQ RCETVLQAEC EASATARSEV ASRTTELAQL EERIAGLTAR LAEHQSHARS LEQKHDHARE ALEHYRTSVK DQREQEQRRH EHQVQELQVA LRQANEALTA KNHDLMQLNR ENGQWLERHT RLERELTQTR QRADAQQRER DALRLAAAEH QGLQARWTKD VQALEGVRAE LAAARTELVE ERQRREHAEA DTLRATVRLS TLEQLLAQLR PPRPVGEQVT SGKDETSPDA NSQLL |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | tnpS | TnpS | TnXax1.1 | 424 | 15846-17120 | + |
|---|
| Class: | Accessory Gene | ||||||||||
| Subclass: | Resolvase | ||||||||||
| Sequence Family: | Tyrosine Site-Specific Recombinase | ||||||||||
| Transposase Chemistry: | Tyrosine | ||||||||||
| Protein Sequence: | VSSVKQYLEA ATRANTERAY AGAIRHFEVE WGGHLPATAE QVARYLAAYA GQLALNTLRH RLAALAQWHQ VHGFVDPTRA PVVRQVLKGI QTLHPSVEKR ATPLQLTQLG QVTTWLEDAA AAAQSRGDRA AELRHLRDRA LLLLGFWRGF RGDELTRLQV NHLRLVPGEG MTCFLPHSKS DRQHAGATYK VPALSRWCPV AATMTWVAAA ALHEGPLFRA VNQWGGIAAA PLHTNSLVPL LRRIFREAGL SSPNDYSGHS LRRGFASWAN ANGWDVKALM EYVGWRDVHS AMRYLDGADP FARQRIEASL SPATPPLLAL AAPALDPVPT TAVEATVTLT RFNSRVRGLA KAHRLIEQIC LQPHQAQRLN ADGTRYRLAI AAVDEAAFEE TIAMLLDEMH RIADNHQCFL AVALRDEAGG RHWD |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | tnpA | TnpA | TnXax1.1 | 1008 | 17092-20118 | + |
|---|
| Class: | Transposase | ||||||||||
| Transposase Chemistry: | DDE | ||||||||||
| Protein Sequence: | MKRADAIGTK LSMTTLHETA YPRLKPDPTA KELQDIYTPT AAELQCVRNI ATGPATRLAL LLHLKLFQRL GYFTPLIEVP ERIVQHVAQT LRMRRVPADR LASYDTSGAK RGHLAQLRAF LNVCPLDAAG RDWLGTVAET AAQTKHIVPD IVNVMLEELV HHRFELPAFS TLERIAIAAR ERVHDAHYRQ IADALSPTMR TLIDNLLLTP PGSHHSDWHT LKREPKRPTN KEVRHYLRHI QRLRILAEQL PPIDVSVPKL KQFRAMARAL DAAELAELVP IKRYALAAIF IRSQYRKTLD DAADLFIRLI QNLENTAQQK LIAYQLEHSK RADALIGQLR EILQAYQVEG TDTERVGAIA GVLVADIALL TAECDEHMAY AGRNYLPFLL APYGTLRPLL FNCLEIMGLR AASQDPSMER MIGAVLALRS QRRETIDAAS LGVATTDLTW LSSAWRKHVM PKALAAASPG WIHRKYFELA VLAQIKDELK SGDLYIPHGE RYDDYREQLV DEATLAQELD AYGEVSGVAT DAADFVQGLR TELTTLADAV DARFSDNLHA SMVDGRLVLK RLQGAQVTQA IATVDSAITD RLPPTSIVDV LVDTTRWLDL HVHFRPIAGT DARVDDLLRR VITTLFCYGC NLGPTQTARS VKGFSRRQIS WLNLKYVTDE TLDKAIVQVI NMYNKFELPG YWGSGKSASA DGTKWSVYEQ NLLSEYHIRY GGYGGIGYYH VSDKYIALFS HFIPCGIHEA VYILDGMLAN RSDIQPDTVH GDTQAQSFPV FGLAHLLGIN LMPRIRNIKD LVFSRPEPGR TYENIQALFG DSLDWTLIET HVHDMLRVAI SIKLGKITAS TILRRLGTYS RKNKLYWAFR ELGKAVRTLF LLRYIDDVEV RKTIHAATNK SEEFNGFVKW AFFGGEGIIA ENVQHEQRKI VRYNQLVANL VILHNVEQMT RVLAELRDEG SNISPEVLAG LSPYRTSHIN RFGDYTLDLK RQVEPIDFSR RILAATTR |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | mltB | MltB | TnXax1.1 | 425 | 20250-21527 | + |
|---|
| Class: | Passenger Gene | ||||||||||
| Subclass: | Plant Pathogenicity | ||||||||||
| Target: | cell wall | ||||||||||
| Comment: | Membrane-bound lytic murein transglycosylase B precursor | ||||||||||
| Protein Sequence: | MIMASRLLRL TLGVSVCVAA TSVAAQAIAP ETTASSATDA GGQQQDPAPT ASFEQWLADF RQRALAAGIG TTTLDNALAG VTPDPSVHEL DQRQPEFTQY LWDYLNARVT PSAIQEGQQL LISQHALFEK LRQHYGVDPG ILTAIWSMES GYGKQIGDFY VIRSLATLAH EGRRTTYGNT QLLAALQILQ TEKSIDRSQL VGSWAGAMGQ TQFIPSTYRD YAVDEDGDQK RDVWNSKADA LGSAANYLKQ NNWTSAVPWG QEVQLSAGFD YAQADLTIKK TVTEWQRLGV APRKPIAPAL AQQLASVLLP TGYRGPAFLV FDNFRSILRY NNSTAYALAV GLLADGYAGR AGVEQPWPKD DPPLNSTAQI TELQQRLTDK GFDVGGIDGV LGAQTRQGIR AFQRIQQLPQ DGYASTSLLA RLRAA |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | avr | Avr | TnXax1.1 | 382 | 21534-22682 | + |
|---|
| Class: | Passenger Gene | ||||||||||
| Subclass: | Plant Pathogenicity | ||||||||||
| Target: | cell wall | ||||||||||
| Comment: | avirulence protein | ||||||||||
| Protein Sequence: | MYVGGCNSSP TYKYCKAINN GAGISKMGCT ISTTNNAPHS PRQEDAPPLP PQTRQSFVGV VNGLLSDLPK RRRRGGSLSD PDISLAGYLL SKAVIGDPVE PQDIPRLHKA NNTVQKTRAR FPYGRGNVAT DIAVSDHASS QHAQAAHDVF VDLVRGAAPA SMLTNPTLGH AVVSEFVQGG HCAGYAAVAT MRHVQKLQPE ESVHYVQHNH QGHDWAESRV PDGHHKTIVL DPWAQGPAVF ASDSRFAANA QHTQERLALN AKDGDDIAAK TAAGAQYLLE NCLPLTETHL KRLKAQEFHC APEEVWQPQP VVSDAFLRRV RQSLATLTNS SELGLSRAEQ SSKALKKMSI KSACALGFGK KAASAAAEGI AAAAYQLGEQ SQ |
||||||||||
| TnCentral Accession | TE Name | Type | Coordinates | Strand | Length |
|---|---|---|---|---|---|
| TnPsy42-KX009060.1 | TnPsy42 | transposon | 713-6379 | + | 5667 |
| Name | Associated TE | Coordinates | Direction | Length | Sequence |
|---|---|---|---|---|---|
| IRL | TnPsy42 | 713-750 | + | 38 | GGGGTTGTAA GCCGGAACCG CCGAAATTTC CGCCACCC |
| IRR | TnPsy42 | 6342-6379 | - | 38 | GGGGTTGTAA GCCGGAACCG CCGAAATTTC CGTCATCC |
1. Pothier JF, Vorholter FJ, Blom J, Goesmann A, Puhler A, Smits TH, Duffy B.
The ubiquitous plasmid pXap41 in the invasive phytopathogen Xanthomonas arboricola pv. pruni: complete sequence and comparative genomic analysis.. FEMS Microbiol Lett. 2011 Oct;323(1):52-60. doi: 10.1111/j.1574-6968.2011.02352.x. Epub 2011 Jul 27. PubMed ID:
21732961
.