Mobile element type:
Transposon
Name:
TnXax1
Synonyms:
Tn7206
Accession:
TnXax1-AE008925
Family:
Tn3
Group:
Tn4651
First isolate:
Yes
Partial:
ND
Evidence of transposition:
ND
Host Organism:
Xanthomonas axonopodis pv. citri str. 306
Date of Isolation:
2017
Country:
Molecular Source:
plasmid pXAC64
| Name | Coordinates | Direction | Length | Sequence |
|---|---|---|---|---|
| IRL | 1-46 | + | 46 | GAGGGTCGGC AGGGATTCGT GTAAAACACA GCCAAAAGTG AGCTAA |
| IRR | 8901-8945 | - | 45 | GAGGGTCGAC AGGGATTTGT GTAAAAAACA GCCAAAATTG AGCTA |
| Name | Associated TE | Coordinates | Orientation | Length | Sequence |
|---|---|---|---|---|---|
| res | TnXax1 | 2649-2726 | + | 78 | TCACGCGGGA TAATCTAGAA TTATCCCGCC TGATACCGGT TTTTCGGCTA AGCTCGCACG CGGGCCGTTA CACCCCGG |
| res_acc_IR2 | TnXax1 | 2649-2662 | + | 14 | TCACGCGGGA TAAT |
| res_acc_IR1 | TnXax1 | 2667-2681 | - | 15 | TCAGGCGGGA TAATT |
| res_core_IRR | TnXax1 | 2709-2716 | + | 8 | CGGGCCGT |
| res_core_IRL | TnXax1 | 2718-2725 | - | 8 | CGGGGTGT |
ORF Summary
| Name | Associated TE | Coordinates | Orientation | Class | Subclass |
|---|---|---|---|---|---|
| xopE2 | TnXax1 | 295-1248 | - | Passenger Gene | Plant Pathogenicity |
| tnpT | TnXax1 | 1504-2559 | - | Accessory Gene | Resolvase |
| tnpS | TnXax1 | 2751-4025 | + | Accessory Gene | Resolvase |
| tnpA | TnXax1 | 3997-7023 | + | Transposase | |
| mltB | TnXax1 | 7156-8433 | + | Passenger Gene | Plant Pathogenicity |
ORF Details
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | xopE2 | XopE2 | TnXax1 | 317 | 295-1248 | - |
|---|
| Class: | Passenger Gene | ||||||||||
| Subclass: | Plant Pathogenicity | ||||||||||
| Protein Sequence: | MSPSLHGLVA LGSSGTRRDR FRQPTLQPHE VQQAAYQLGM RLSGRPIEDA SDRQRLADAT ETVHETRLAL HRGRGNVDSD LRLSNGRSAT YSSLSYCLGE NDENLLAGSA LAAGAGNCDH NAAINARRHA VRMEDGGQMM NVRDYEQTHL YALYQPPSSA EAEESPVVLD SWGDGPAVLL RDSHWAETYG TSTNVIERFD KRDAIDALAR TNAFRAEIED PQTDLHANAR DLETAFLANP APGDIFSAMP VIAPELAQST RQRLQEYSPR TRQALAADAA RQAYGLDNAQ PISPRTTAAI LQDAERLDAL GRPPLSW |
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| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | tnpT | TnpT | TnXax1 | 351 | 1504-2559 | - |
|---|
| Class: | Accessory Gene | ||||||||||
| Subclass: | Resolvase | ||||||||||
| Protein Sequence: | MARSGLYKSD VQRARDRLRA TGTHPSVDAV RVALGNTGSK TTIHRYLREL EEEEGQSVGA KMGVSDALQD LIARLAERLH AEADTVVAQA QARFQAQLQE RTQALEQARQ EAGSLRTQLQ RCETALQAER EAGDAARSEV ARRTTELAQL EERIAGLTAR LAEHDAHAKS LEHKHEHARE ALEHYRTSVK DQREQEQRRH EHQVQELQVA LRQANEALTA KNHDLMQLNR ENGQWLERQT RLERELAQAR QRADAQQRER DALRLAAAEH QALQVRWTQD VHALEGVRTE LSAARTELVE ERQRREHAEA DTLRATVRLS TLEQLLAQLR LAHSVGEPEN AIAAGAMPAG K |
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| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | tnpS | TnpS | TnXax1 | 424 | 2751-4025 | + |
|---|
| Class: | Accessory Gene | ||||||||||
| Subclass: | Resolvase | ||||||||||
| Sequence Family: | Tyrosine Site-Specific Recombinase | ||||||||||
| Transposase Chemistry: | Tyrosine | ||||||||||
| Protein Sequence: | MISVAQYLEA ATRPNTERAY AAATRHFEIE WGGHLPTTAE QVARYLAAYA GQLALNTLRH RLAALAQWHQ AHGFADPTRA PVVRKVLKGI QTVHPSQEKR ATPLQLTQLG QVVDWLDGAA TAAGTRDDAA GRLRHMRDRA FVLLGFWRGF RGDELVRLQV QDLELVAGEG MTCFLPHSKS DRQHAGTTYK VPALSRWCPV AATMAWVAAA ALHEGPLFRA VNQWGGIAAA PLHPNSLVPL LRRIFREAGL SSPNDYSGHS LRRGFAGWAN ANGWDVKALM EYVGWRDVHS AMRYLDGADP FARQRIEASV SPATPPLLAL AAPAPDPVPT TAVEATVTLT RFNSRVRGLA KAHRLIEQIC LQPHQAQRLN ADGTRYRLAI AAVDEAAFEE TIAMLLDEMH RIADNHQCFL AVALRDEAGG RHWD |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | tnpA | TnpA | TnXax1 | 1008 | 3997-7023 | + |
|---|
| Class: | Transposase | ||||||||||
| Transposase Chemistry: | DDE | ||||||||||
| Protein Sequence: | MKRAGAIGTE LGMTTLHETA YPRLKPDPTA KELQDIYTPT AAELQCVRNI ATGPATRLAL LLHLKLFQRL GYFTTLIEVP ERIVQHVAQT LGMRRVPADR LAGYDASGAK RGHLAQLRAF LNVCPLDAAG RDWLGTVAET AARTKHIVPD IVNVMLEELV HHRFELPAFS TLERIAIAAR ERVHDAHYRQ IADALSPTMR TLIDNLLLTP PGSHHSDWHT LKREPKRPTN KEVRHYLRHI QRLRILAEQL PPIDVSVPKL KQFRAMARAL DAAELAELVP IKRYALAAIF IRSQYRKTLD DAADLFIRLI QNLENTAQQK LIAYQLEHSK RADALIGQLR EILQAYQVEG TDTERVGAIA GVLVADIALL TAECDEHMAY AGRNYLPFLL APYGTLRPLL FNCLEIMGLR AASQDPSMER MIGAVLALRS QRRETIDAAS LGVATTDLTW LSSAWRKHVM PKALAAASPG WIHRKYFELA VLAQIKDELK SGDLYIPHGE RYDDYREQLV DEATLAQELD AYGEVSGVAT DAADFVQGLR TELTTLADAV DARFSDNLHA SMLDGRLVLK RLQGAQVTQA IATVDSAITD RLPPTSIVDV LVDTTRWLDL HVHFRPIAGT DARVDDLLRR VITTLFCYGC NLGPTQTARS VKGFSRRQIS WLNLKYVTDE TLDKAIVQVI NMYNKFELPG YWGSGKSASA DGTKWNVYEQ NLLSEYHIRY GGYGGIGYYH VSDKYIALFS HFIPCGIHEA VYILDGMLAN RSDIQPDTVH GDTQAQSFPV FGLAHLLGIN LMPRIRNIKD LVFSRPEPGR TYENIQALFG DSIDWTLIET HVHDMLRVAI SIKLGKITAS TILRRLGTYS RKNKLYWAFR ELGKAVRTLF LLRYIDDVEV RKTIHAATNK SEEFNGFVKW AFFGGEGIIA ENVQHEQRKI VRYNQLVANL VILHNVEQMT RVLAELRDEG SNISPEVLAG LSPYRTSHIN RFGDYTLDLK RQVEPIDFSR RILAATTR |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | mltB | MltB | TnXax1 | 425 | 7156-8433 | + |
|---|
| Class: | Passenger Gene | ||||||||||
| Subclass: | Plant Pathogenicity | ||||||||||
| Target: | cellwall | ||||||||||
| Comment: | Membrane-bound lytic murein transglycosylase B precursor | ||||||||||
| Protein Sequence: | MIMPSRLLRL TLGVSVCVAA TSVAAQAIAP ETTASSATDA GGQQQDPAPT SSFEQWLADF RQRALAAGIG ATTLDNALAG VTPDPAVHEL DQRQPEFTQY LWDYLDARVT PSAIQEGQQL LISQHALFEK LRQHYGVDPG ILTAIWSMES GYGKQIGDFY VIRSLATLAH EGRRTTYGNT QLLAALQILQ TEKSIDRSQL VGSWAGAMGQ TQFIPSTYRD YAVDEDGDQK RDVWNSKADA LGSAANYLKQ NNWTSAVPWG QEVQLSAGFD YAQADLTIKK TVAEWQRLGV APRRPIAPAL AQQLASVLLP TGYRGPAFLV FDNFRSILRY NNSTAYALAV GLLADGYAGR AGVKQPWPKD DPPLNSTAQI TELQQRLTDK GFDVGGIDGV LGAQTRQGIR AFQRSQQLPQ DGYASTSLLA RLRAP |
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1. da Silva AC, Ferro JA, Reinach FC, Farah CS, Furlan LR, Quaggio RB, Monteiro-Vitorello CB, Van Sluys MA, Almeida NF, Alves LM, do Amaral AM, Bertolini MC, Camargo LE, Camarotte G, Cannavan F, Cardozo J, Chambergo F, Ciapina LP, Cicarelli RM, Coutinho LL, Cursino-Santos JR, El-Dorry H, Faria JB, Ferreira AJ, Ferreira RC, Ferro MI, Formighieri EF, Franco MC, Greggio CC, Gruber A, Katsuyama AM, Kishi LT, Leite RP, Lemos EG, Lemos MV, Locali EC, Machado MA, Madeira AM, Martinez-Rossi NM, Martins EC, Meidanis J, Menck CF, Miyaki CY, Moon DH, Moreira LM, Novo MT, Okura VK, Oliveira MC, Oliveira VR, Pereira HA, Rossi A, Sena JA, Silva C, de Souza RF, Spinola LA, Takita MA, Tamura RE, Teixeira EC, Tezza RI, Trindade dos Santos M, Truffi D, Tsai SM, White FF, Setubal JC, Kitajima JP.
Comparison of the genomes of two Xanthomonas pathogens with differing host specificities.. Nature. 2002 May 23;417(6887):459-63. doi: 10.1038/417459a. PubMed ID:
12024217
.
2. Alegria MC, Souza DP, Andrade MO, Docena C, Khater L, Ramos CH, da Silva AC, Farah CS. Identification of new protein-protein interactions involving the products of the chromosome- and plasmid-encoded type IV secretion loci of the phytopathogen Xanthomonas axonopodis pv. citri.. J Bacteriol. 2005 Apr;187(7):2315-25. doi: 10.1128/JB.187.7.2315-2325.2005. PubMed ID: 15774874 .
2. Alegria MC, Souza DP, Andrade MO, Docena C, Khater L, Ramos CH, da Silva AC, Farah CS. Identification of new protein-protein interactions involving the products of the chromosome- and plasmid-encoded type IV secretion loci of the phytopathogen Xanthomonas axonopodis pv. citri.. J Bacteriol. 2005 Apr;187(7):2315-25. doi: 10.1128/JB.187.7.2315-2325.2005. PubMed ID: 15774874 .