Mobile element type:
Transposon
Name:
TnPsy39
Synonyms:
Tn7187
Accession:
TnPsy39-CP018203.1
Family:
Tn3
Group:
Tn3000
First isolate:
Yes
Partial:
ND
Evidence of transposition:
Yes
Host Organism:
Pseudomonas syringae pv. actinidiae ICMP 9853
Date of Isolation:
2016
Country:
Molecular Source:
plasmid p9853_A
| Name | Coordinates | Direction | Length | Sequence |
|---|---|---|---|---|
| IRL | 1-39 | + | 39 | GGGGTCCGGG GAGCAATGGA ACAGCCAACC GACTTAAGG |
| IRR | 3901-3939 | - | 39 | GGGGTCCGGG GAGCAATGGA ACAGCGAACC GACTTAAGG |
ORF Summary
| Name | Associated TE | Coordinates | Orientation | Class | Subclass |
|---|---|---|---|---|---|
| tnpR | TnPsy39 | 219-794 | + | Accessory Gene | Resolvase |
| tnpA | TnPsy39 | 799-3771 | + | Transposase |
ORF Details
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | tnpR | TnpR | TnPsy39 | 191 | 219-794 | + |
|---|
| Class: | Accessory Gene | ||||||||||
| Subclass: | Resolvase | ||||||||||
| Sequence Family: | Serine Site-Specific Recombinase | ||||||||||
| Transposase Chemistry: | Serine | ||||||||||
| Protein Sequence: | MTQTLIGYAR CSTDKQDLAA QQEALLKLGV APDRIYTDPG FTGTNRARPG LDQALAAVRN GDTLVVSKLD RLARSVPDAR TIGDNLAARG VKLQLGSSIH DPTDPMGKLF FNILATFAEF EADLIRMRTR EGMAVARAKG KLRGKKPKLS DRQQKELRRM YDTSNYSISD LAELFSISRP TVYRTLARQA V |
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| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | tnpA | TnpA | TnPsy39 | 990 | 799-3771 | + |
|---|
| Class: | Transposase | ||||||||||
| Transposase Chemistry: | DDE | ||||||||||
| Protein Sequence: | MPVSFLSSTQ RERYGCYPDR LSSEELARYF HLDDDDREWI STKRRDSNRL GYALQLTTAR FLGTFLEDPT AVPCTVLHTL SSQLGIADAN CVQTYRESEQ RWRHTTEIRA RYGYREFVER GMQFRLGRWL CALCWTGTDR PSALFDYANG WLIGHKVLLP GVTVLERFIA EIRSRMESRL WRLLVRGVTD EQCQRLDDLL KLASGSRQSR LDRLRKGPVR VSAPALVMAL QRIETVRGLG IKLPGTHVPP SRIAALARFA GTVKVSAIAR LPQVRRIATL VAFVHCLEAS AQDDALDVLD LLLRDLFTKA EKENRKVRQR TIKDLDRAAS TLAEACRILL DCGLPDSELR ERVYATIGRD ALAQALDEVR GLVRPPNDVF YTELEGKKGT VTRFLPTLLR VIRFDATPAA QPLIQALEWL REKPDPNPST AIVGKAWLRH VVQDDGRINA TAYSFCTLDK LRSAIRRRDV FISPSWRYAD PRTGLLTGAE WETARPIVCR SLGLSVQADD TLTALTRELD ETYRRVAARL PKNDAVRFET VDDKIELVLS PLEALEEPPS LIALRNAIKA RLPRVDLPEI LLEVAGRTGC MDAFTHLTER TARAGDLTTS LCAVLMAEAC NTGPEPLVRQ DTPALKRDRL MWVDQNYVRD DTLIACNALL VAAQNRIALA HTWGGGDVAS ADGMRFVVPV RTIHAAPNPK YFNLGRGVTW YNLLSDQRTG LNAITVPGTL RDSLVLLAVV LEQQTELQPT QIMTDTGAYS DLVFGLFRLC NYRFCPRLAD VGGTRFWRVD PQADYGDLNA LARQRVNLDR ITPHWDDVLR LIGSLKLGLV PAMGIMRTLQ VDERPTSLAQ AIAEIGRIEK TIHMLNFIDD EAKRRATQLQ LNLGEGRHSL AREVFHGKRG ELFQRYREGQ EDQLSALGLV VNMIVLWNTV YMDAVLMQLR SEGYPIRPDD EARLSPFGHE HINMLGRYSF SVPEDVARGE LRPLNGGGES |
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