Mobile element type:
Transposon
Name:
TnPa43
Synonyms:
Tn7176
Accession:
TnPa43-TNC00330
Family:
Tn3
Group:
First isolate:
ND
Partial:
ND
Evidence of transposition:
Yes
Host Organism:
Pseudomonas aeruginosa
Date of Isolation:
Country:
Usa
| Name | Coordinates | Direction | Length | Sequence |
|---|---|---|---|---|
| IRL | 1-38 | + | 38 | GAGGGTCGGC AGGGATTCAT GTAAAAAACC GCAGAAAC |
| IRR | 19851-19888 | - | 38 | GAGGGTCGGC AGGGATTCAT GTAAAAAACC GCAGAAAC |
ORF Summary
| Name | Associated TE | Coordinates | Orientation | Class | Subclass |
|---|---|---|---|---|---|
| methyltransferase | TnPa43 | 43-1824 | - | Passenger Gene | Other |
| phyH | TnPa43 | 2769-3629 | + | Passenger Gene | Other |
| htxB | TnPa43 | 3654-4550 | + | Passenger Gene | Other |
| htxC | TnPa43 | 4674-5522 | + | Passenger Gene | Other |
| htxD | TnPa43 | 5556-6368 | + | Passenger Gene | Other |
| phnE | TnPa43 | 6365-6910 | + | Passenger Gene | Other |
| phnG | TnPa43 | 7424-7903 | + | Passenger Gene | Other |
| phnI | TnPa43 | 8375-9601 | + | Passenger Gene | Other |
| phnJ | TnPa43 | 9598-10503 | + | Passenger Gene | Other |
| phnK | TnPa43 | 10729-11301 | + | Passenger Gene | Other |
| phnL | TnPa43 | 11315-12040 | + | Passenger Gene | Other |
| phnM | TnPa43 | 12037-13191 | + | Passenger Gene | Other |
| phnN | TnPa43 | 13205-13774 | + | Passenger Gene | Other |
| phnP | TnPa43 | 13765-14532 | + | Passenger Gene | Other |
| eamA family transporter | TnPa43 | 14529-15338 | + | Passenger Gene | Other |
| tnpR | TnPa43 | 15456-16790 | + | Accessory Gene | Resolvase |
| tnpA | TnPa43 | 16847-19834 | + | Transposase |
ORF Details
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | methyltransferase | Methyltransferase | TnPa43 | 593 | 43-1824 | - |
|---|
| Class: | Passenger Gene | ||||||||||
| Subclass: | Other | ||||||||||
| Protein Sequence: | MDASTARFYE DNAQDIATRY ESVGSPVAKY FPLAFVPGAR LLDIGAGSGR DLAHLLKSGY EAYGVEPTDG LRAAAKVAHP ELENRLASAA LPELGMPFDG KFDGILCSAV LMHVPDHQLF DAALAIRALL NPHGRLLLSL PLTRGDNLVE QRDTSGRLFQ GYTAEEIQLL FERLGFQCIG RWDSDDALAR AGTSWYTLLL ELRTTGTLRA IDQIEGVLNR DKKVATYKLA LFRALADIAM HESKTAVWQA SGQVGVPLLC IAEKWLMYYW PIFASQQFTP QSQSEGAGGI KPVKFRAALT ALMQPYRDQG AHGGLSAWHL DWLAGRLSGG MQDQLRSVLR LIAQTIRLGP VEFSGGALES GTVFEYDSPS GLVLMPADIW KELSLLGHWI ADAVVLRWAA LTERFGYRQG ITSGAVLPLL LARPDPERAT MLARQAYERA GVTRCTWSGR PLNQRFAVDH AIPFSLWANN DLWNLLQVDQ QVNANKSDKL PSQRRTEELG RRLVEQEAAV KQLNASNEQL EAKANELLTA KQQLELALTA AKSSVTAQEQ VVVSMLERFS ATVPSPDASA KDPVEGAEKM TQRNDKNPTV TGT |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | phyH | PhyH | TnPa43 | 286 | 2769-3629 | + |
|---|
| Class: | Passenger Gene | ||||||||||
| Subclass: | Other | ||||||||||
| Function: | Peroxisomal enzyme catalyzes the first step of phytanic acid alpha-oxidation. | ||||||||||
| Sequence Family: | phyH (Pfam: PF05721) | ||||||||||
| Comment: | phytanoyl-CoA dioxygenase | ||||||||||
| Protein Sequence: | MFAEQQREYL DKGYTKIESF FSAEEVAKIL EDVKQIELGA IGVASDNETY QFEKKNGETT KLLRRVENPH LYFDAIDSLV RSEKIVDLLR HFLGENIRLH NSKINFKPPS GAPVQWHQDW AFYPHTNDDF LTLGIFLDET SEKNGAMACL PGSHKGKVYD HRNVETGEFC HAISRSNWDE ALDPTEGELL TGPVGTVTLH HVRTLHGSGP NHSTIRRRFL LIGYAAADAW PLLGCGNYGD YESLMVSGRS TVFPRMVELP LTVPYPLSMY GDRIFESQRA LTQKYY |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | htxB | HtxB | TnPa43 | 298 | 3654-4550 | + |
|---|
| Class: | Passenger Gene | ||||||||||
| Subclass: | Other | ||||||||||
| Function: | ABC transporter, phosphonate, periplasmic substrate-binding protein | ||||||||||
| Sequence Family: | Phosphonate-bd (PF12974) | ||||||||||
| Comment: | phosphite transport system-binding protein | ||||||||||
| Protein Sequence: | MQVFTLFSKF KKALTRAILA FIATIIVCTP AQAAEVVNGK LHLRFAIAPM RPTPSQTIKE FEPIFKYLAD QLGATYEIVS PESWAAISVA MTNGHVDVGW LGPWGYVLSN KKAGTEVLAT VKYRGEPFYK ALIVGRADLP IKKWPEDAKG LKLSLSDQGN TSGWLIPMAY FKSIGIDPAS YFEYREGATF GQNESQIQHG LIDLGSDMDR GRNGMIEAGQ IDPSKSKIVW ESSKLPNDAI SVPKDFDPAL KARITEILTS LSEEKAQSLM GSGYNGFVKA KHSDYKVIED AGRILGKL |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | htxC | HtxC | TnPa43 | 282 | 4674-5522 | + |
|---|
| Class: | Passenger Gene | ||||||||||
| Subclass: | Other | ||||||||||
| Function: | phosphonate ABC transporter | ||||||||||
| Sequence Family: | BPD_transp_1 (Pfam:PF00528) | ||||||||||
| Comment: | phosphonate ABC transporter permease | ||||||||||
| Protein Sequence: | MNQRIEEVML ANVKRDVARR KRHFATSVVV LSLLAVAWYV CQIEFQKLGA GLPRLWSFVV QMFPPDLSDL DVILKGAGET LAMATIGTIF ATIIAFPLAL MAARNTCPNK WTYRVSRAIL NASRGTETFV YALVFVAAVG FGPFSGVLAI TFHMVGAIGK MFAEAIEPVD QGPLDALALT GASRAKIIRY GLIPDVMPHL IASVLYIWEF SVRTSTVLGI VGAGGIGQTL KDTVDLLEFN KMITVLAVVL LMVSAIDFIS DRLRYLILDT KREGFETLPA NN |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | htxD | HtxD | TnPa43 | 270 | 5556-6368 | + |
|---|
| Class: | Passenger Gene | ||||||||||
| Subclass: | Other | ||||||||||
| Sequence Family: | ABC_tran (Pfam: PF00005) | ||||||||||
| Comment: | phosphonate ABC transporter ATP-binding protein | ||||||||||
| Protein Sequence: | MKDVALQLKN VGKSYGNKVV LESIDFEVRH GSMVALLGTS GAGKSTLFRC LTGLEPIDSG SIVALGESIH ELSPARLRAV RGQIGFVFQQ LHLVKRFSAL ENVLGARLAE MPIWRVTLKS FSRADKVLAF ECLDRVGMLD YANTPTQLLS GGQQQRIAIA RALAQKPKII IADEPVSSLD PLTARSVLQT LKAAATDLNV AVLCSLHQVD LAREFGDRIV GMRDGRVVFD GTPAEFTDER VHALYQGARW EDAPAAESDA QHSVAGLAVA |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | phnE | PhnE | TnPa43 | 181 | 6365-6910 | + |
|---|
| Class: | Passenger Gene | ||||||||||
| Subclass: | Other | ||||||||||
| Function: | hypothetical protein | ||||||||||
| Comment: | Phosphonate ABC transporter PhnE WP_023121727.1 | ||||||||||
| Protein Sequence: | MTTSTRPIPV PPQGTALHWH LSAPYNAKHL LVLIAVMVLL FVTGQRTEMD RMVAMTAQAV AKTVGLADDS QVARGLSRVG QAMWPPAIAE TEEVGRIQDL DRQKLPLFSH IETQERVEQK MNLDTLKMEA TTETVEVLVK PVGYVWTVFI KMIETLEIAL WGTILSVLVS IPLAYFAARN Y |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | phnG | PhnG | TnPa43 | 159 | 7424-7903 | + |
|---|
| Class: | Passenger Gene | ||||||||||
| Subclass: | Other | ||||||||||
| Function: | Phonsphonate metabolism protein | ||||||||||
| Sequence Family: | PhnG (Pfam: PF06754) | ||||||||||
| Comment: | phosphonate C-P lyase system protein | ||||||||||
| Protein Sequence: | MTNTSEAPDR AQWLRLWSAL PAAAVKALAA DLAGQHRVED LALPQSGLGL LPLTDSALGD TYFIGEIPLA QAHVRVTTTQ GQSIEGAAIL VDDRAGVARS MAILDAVLAA RMPGCEAALR LLTQGATAVA EQGRQRRALL AATRVDFALL GTNEEDDDE |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | phnI | PhnI | TnPa43 | 408 | 8375-9601 | + |
|---|
| Class: | Passenger Gene | ||||||||||
| Subclass: | Other | ||||||||||
| Function: | carbon-phosphorous lyase complex subunit PhnI | ||||||||||
| Sequence Family: | PhnI (Pfam: PF05861) | ||||||||||
| Comment: | carbon-phosphorus lyase | ||||||||||
| Protein Sequence: | MECPLPAGRG PDSGERARGR GIAPNHPHQP QRSPLMGYVA IKGGGRAIAG AEAAVEALRC AEGPAGTPLT LSAIEQQLRL LTSRVVSEGG LYHPRLAALA IKQMQGDTLE AAFALRAYRS TKPRLMDVPV QDTSRMRLIR RISSAFKDIP GGQMLGPTTD YALRLMRLDL ANESPEDFRA VSRRFLDSVA DTDLPDSFPK VVDALRDEGL LPPLTRRAHA AFDITRDPLV FPVPRSAALA TMARAETGSL LAIAYSNMRG YGDVHPTIAE LRVGYVPVML PHPVTGEPIE AGEVLMTECE VVAMFEGDAT DGPPTFTLGY GACFGHNEVK AIAMAILDRA LQKGMRDGPS NPSEDPEFVL LHVDGVDSMG FASHYKMPHY VTFQSDMDRL RTTQDKATAQ PTQEGAPS |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | phnJ | PhnJ | TnPa43 | 301 | 9598-10503 | + |
|---|
| Class: | Passenger Gene | ||||||||||
| Subclass: | Other | ||||||||||
| Function: | Phosphonate metabolism protein | ||||||||||
| Sequence Family: | PhnJ (PF06007) | ||||||||||
| Comment: | Phosphonate metabolism protein PhnJ | ||||||||||
| Protein Sequence: | MNPGYELPLD EAGYSFGFLD EYAKREVRRT ILKAISIPGY QTPYASREMP MGRGFGTGGL QVTLSLIGEG DTLKVIDQGA DDSVNAVNLR HFVELTCPGV DTTEHTLDAT LIQSRHRIPE TPLTEAQVLI LQVPYPDPLV VVEPSEARRK VMHGEGDYSR LLTKLYEDIV QFDEITISHR YPTRINGHYV IDPSPIPRYD VPQLHQSPAL ILLGAGREKK IYAVPPYTRA DPLAFDDVPF RTEDFTNEHG QRRACERCGA TDSFLDELIA DDGGKHWHCS DSDFCNSRMA RQAEQAQETT V |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | phnK | PhnK | TnPa43 | 190 | 10729-11301 | + |
|---|
| Class: | Passenger Gene | ||||||||||
| Subclass: | Other | ||||||||||
| Function: | phosphonate ABC transporter ATPase | ||||||||||
| Sequence Family: | ABC_tran (Pfam: PF00005) | ||||||||||
| Comment: | phosphonate ABC transporter ATPase | ||||||||||
| Protein Sequence: | MSPPLVKPMF ALNAAQQRWL RNHRFGMVYQ NPHLGLNFNV SAGGNIAERL LMSDLAHYGE IRERARSLLA RTEVLAERMD ESPKKFSGGM QQRVQIAKAL ATQPPLLYLD EVTTGLDLSV QARILDLILE IQQELGTAMI VVTHDLGVIR LLTGRTIVMK YGRVIESGLT DQILEDPQHA YTQRLVASAL |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | phnL | PhnL | TnPa43 | 241 | 11315-12040 | + |
|---|
| Class: | Passenger Gene | ||||||||||
| Subclass: | Other | ||||||||||
| Function: | phosphonate C-P lyase system protein PhnL [Proteobacteria] | ||||||||||
| Comment: | phosphonate C-P lyase system protein | ||||||||||
| Protein Sequence: | MQEAILKIEG LSKQFQLHDQ NKLIPSCAQV QLEVFAGELT ALIGPTGAGK SSVLKAIYRT YLPSSGRILY RDANGAITDL AQASEHRMLE LRKQDLGFVT QFLHCLPRKS AVEVVAEPLV QRGSPREAAA ERARELLALL NVPERLWAVP PATFSGGEKQ RVNLARGLIA RPRLLLLDEP TASLDPSTTD RVVELLKSIK AEGVAMLAIF HDPELVRRLA DRVVTLTPPV SAAALLETCA S |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | phnM | PhnM | TnPa43 | 384 | 12037-13191 | + |
|---|
| Class: | Passenger Gene | ||||||||||
| Subclass: | Other | ||||||||||
| Function: | alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase [Proteobacteria] | ||||||||||
| Comment: | alpha-D-ribose 1-methylphosphonate 5-triphosphate WP_003118407.1 | ||||||||||
| Protein Sequence: | MNPILLTHAR VVFPTEVRDN VAILIEGDTI TAIDPASSAG ATEIDLRGRT LMPGLIDLHC DAMEKEVEPR PGVHFPLEFA CAQADKRNAA AGITTVFHAL SFANHELGVR NNAFAAEIAR SIGDWQAHAL IDNRVHVRYE VTDETAPPVL SALLQDGHAH LMSFMDHSPG QGQFRDVEAY RAYLAKTYKT DEAQIDDILA RKAGAAQGAM RRMEQLAELA RACGVSIASH DDDSPQKVAT VKALGAVVSE FPVNLETAQA ARAQGLATLF GAPNILRGKS QSGNMRALDA VLAGVADCLC GDYSPAALLP SVMRLPDLAG IPLAEAVALV TCNPARAAGL HDRGEIAVGK RADLIAVKTM GGLPQAERVW SGGKASLVAH FDHA |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | phnN | PhnN | TnPa43 | 189 | 13205-13774 | + |
|---|
| Class: | Passenger Gene | ||||||||||
| Subclass: | Other | ||||||||||
| Function: | phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN [Proteobacteria] | ||||||||||
| Comment: | phosphonate metabolism protein/1,5-bisphosphokinase WP_003118406.1 | ||||||||||
| Protein Sequence: | MRTRLIYVVG ASGSGKDTLM GHARQKLAGD PRVCFAHRYI TRPATAGGEN HVALTTEEFT ARQNGKLFAM HWSSHGLHYG IGIEINQWLG KGITVVINGS REYLDEARQR YPELLPVTID VATTVLRDRL LARGREDAES IEQRLHRHET LRLQPVPGVL IQNNGPVEVA GEALIRLIAE HTQGAPVCV |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | phnP | PhnP | TnPa43 | 255 | 13765-14532 | + |
|---|
| Class: | Passenger Gene | ||||||||||
| Subclass: | Other | ||||||||||
| Function: | phosphonate metabolism protein PhnP [Proteobacteria] | ||||||||||
| Comment: | phosphonate metabolism protein WP_003118405.1 | ||||||||||
| Protein Sequence: | MRVSFLGTGA AGGVPLYGCT CRACERARTE PHFVRRPCSA LIESGGTRVL LDAGLMDLHE RFAPGSLDAI VLTHYHPDHV QGLFHLRWGK GTPITVYGPP DSEGCADLFK HPGVLAFETV HKFEAFTVGA LRLTPLPLLH SKPTLGYAIE GTQGQRFAYL TDTLGLPPKS AKFLRAWGDF DMAIDCSYPP HPTPKNHNDW DEAHRCAIES GARITWLTHA GHALDDWMME ETPSVASHIR LARDGSTADI PSQTQ |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | eamA family transporter | EamA family transporter | TnPa43 | 269 | 14529-15338 | + |
|---|
| Class: | Passenger Gene | ||||||||||
| Subclass: | Other | ||||||||||
| Function: | EamA-like transporter family | ||||||||||
| Sequence Family: | EamA (Pfam: PF00892) | ||||||||||
| Comment: | listed as hypothetical protein in Blast, Most likely EamA family transporter | ||||||||||
| Protein Sequence: | MNAPLALALS VAMHVTWNLM ARHLPRESNP LWWVLLAHLV LFAPWGFWEL ATTVVWSLEM TLLLIVSATA NVVYFSGLAR AYEHAPVALV YPLVRSSPLF IAIWGTLFFG QNLPPIAWLG IGISVLGLLV MASSAQQGSD RRAFRWAMLA MLATSVYSLS DKAATEHIPS FMGLVGFLSV GYLASWISMT LRMHRHTRSW VPAQRIDLAS LALGGTCIGL AYALVIHAMR QLLRRRSCRT PTPVSCSLQF SPFFCSMTKS DGKRESWGS |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | tnpR | TnpR | TnPa43 | 444 | 15456-16790 | + |
|---|
| Class: | Accessory Gene | ||||||||||
| Subclass: | Resolvase | ||||||||||
| Sequence Family: | Serine Site-Specific Recombinase | ||||||||||
| Transposase Chemistry: | Serine | ||||||||||
| Protein Sequence: | MSQISRYVEA AERDNTRRSY AAAIRHFEVE WKGLLPTTAD ATSRYLADHA ATLAISTLRQ RLAALSRWHI DHGFADPTKA PLVRQVLKGI RSIHSVAEKR ARPLEIDVVQ QIDQWLGVAI GNAERSDDRL ALLRHTRNRS LLLLGFWRGF RSDELVNLRV ENVEVSPGEG LSCYLSRSKG DRQMLGRVYK CPALSRLCPV TAFTAWVSLV GLTQGPVFRK IDRWGRIGQE GLHANSLIPL LRSLLAEAGV AASEAYSSHS LRRGFAGWAR ASGWDIKELM EYVGWKDVKS AMRYLDASGS ALQARFEAGL ATLAPADRAD RSPPPSMHAP AEQTKEQAQR PRLPELATPS AILRVTVLLA RFSPQSRGLT RGRRLIEQTC FERYAMQRLN TEGTQYELTV PYESRDSLEE AIAALLDDMY RIAEDNQCLL EAAFHEPATD SYWD |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | tnpA | TnpA | TnPa43 | 995 | 16847-19834 | + |
|---|
| Class: | Transposase | ||||||||||
| Sequence Family: | DDE_Tnp_Tn3 (Pfam: PF01526) | ||||||||||
| Transposase Chemistry: | DDE | ||||||||||
| Protein Sequence: | MTTLHETAYP HLKPDPTERE LAELFTPTEA ERALVAGVGK RPLPRVAALI HLKVFQRLGY FLTLSDVPQV IREHVAQHAG VPRAPALADL KRFEASGSRM VVFTALRRYL NVKPLNPAGY AWLGVVADTA AETKHAVADI INVMLEELVH HRCELPAFST LDRMAFRARE KSNNQHFSAI AGQLTSQTKT LIDGLLKTAT GESASPWQML KREPKRPTNK ETRTYIQHIR RLQHLVEQLP KPDVPVPKLK QFRLLARALN ATEMAELKPQ KRYALVVIFI RAQHAQSLDD AADLFIRLMQ NLENNARQKL LSFQQERVHK TDMLVGQLKD ILGAYQLVGT DTQRVEAIST TLVAEVDELL NECEQHLAYA GRNHLPFLLQ PYKMVRAQLL NCIDIASPKA SSEDLVVERL MEALSKLRDN RADTVPLDML GLSEDTDLRW MSAQWRKLVL VKPAGKGRAE SVRRRYFELA VMHAVKDDLK SGDLFIKFGE RYDDYREQLV DDETFERELG DYGQVTGIET EPGAFVSKLK SSMALRAMEI DAGFPENAHA EIVDGRLILR KPPRSDIVEA AARIDGMITE RMEAASIVDV MIDTERWLDL HKLFRPLAGT DSRLEDLRMR VITTLFCYGC NLGPVQTAKS IKGLSRRQIS WLNLKYVSED LLDKAIVKVI NAYNKFELPG YWGTGKHASA DGTKWNLYEQ NLLSEHHIRY GGYGGIGYYH VSDKFIALFS HFISCGTYEG IHILDGLMSN ESDIRPDTIH GDTQAQSYPV FALAHLLGIQ LMPRIRGIQD LKFHRPQVGT VYQNINTLFS DVIDWQLIEL HLPAMLRVAV SIKTGKITPS AILRRLGTYS RKNKLYFAFV ELGKVIRTMF LLSYIGDVGL RKVIHAETNK SEQFNGFAGW SFFGGEGIIA ENIRHEQRKV IKYNHLVANM IILHNVVGMT RVLRELRDEG TEITPEILGG LAPFRTAHIN RFGDYTLDFR RKIGPLDFEV TIIPI |
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