Mobile element type:
Transposon
Name:
TnMex38
Synonyms:
Tn7166
Accession:
TnMex38-CP001513
Family:
Tn3
Group:
Tn163
First isolate:
Yes
Partial:
ND
Evidence of transposition:
Yes
Host Organism:
Methylobacterium extorquens AM1
Date of Isolation:
2009
Country:
Molecular Source:
plasmid p2META1
| Name | Coordinates | Direction | Length | Sequence |
|---|---|---|---|---|
| IRL | 1-36 | + | 36 | GAGAGCATCG TGTTGGTTGT TCGCCCATTT ACGGTT |
| IRR | 3806-3841 | - | 36 | GAGGGCATCG TGTTGACTGT TCGCCCAGTT ACGCTT |
ORF Summary
| Name | Associated TE | Coordinates | Orientation | Class | Subclass |
|---|---|---|---|---|---|
| tnpR | TnMex38 | 90-659 | - | Accessory Gene | Resolvase |
| tnpA | TnMex38 | 817-3780 | + | Transposase |
ORF Details
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | tnpR | TnpR | TnMex38 | 189 | 90-659 | - |
|---|
| Class: | Accessory Gene | ||||||||||
| Subclass: | Resolvase | ||||||||||
| Sequence Family: | Serine Site-Specific Recombinase | ||||||||||
| Transposase Chemistry: | Serine | ||||||||||
| Protein Sequence: | MGDVLGYARV STGDQDVAGQ RLRLEHAGAI RVFTDVRSGK SMDRPGLSEL LAYARKGDTL AVVRLDRLGR SLAELLSSVT LLKERGIALL SLEEKIDTGS AAGELVFHVF GAIAHFERRL IAERTKDGIA AARAKGRRPG RQPIDPDKVG AALKLVQAGL SPTEAARQVG LGRATVYREM ALAGVARPA |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | tnpA | TnpA | TnMex38 | 987 | 817-3780 | + |
|---|
| Class: | Transposase | ||||||||||
| Transposase Chemistry: | DDE | ||||||||||
| Protein Sequence: | MARRSLLSTA ERARLFGIPV DRDGLARHYT FDRQDLALIA TRRGDANRIG FAVQLALLRH PGFGLSPAIT VEPALVTRIA EQLAIDPRAF TAYAGRSPTI SDHARALERV LGLRPCARAD LPSMITAAAR AAWPTDQGEP IAVAVMAALR DSGIVLPAPD TIERAGLAGR ARARKQVAAA LLAGMTDALA AQLDALLAID PKIGRPPLSW MKDLPRAPKP NHVRELLDKL AAVRDLGLDP RAAERIHPDR LALLMREGRI TPASTLERYA PSRRRAIVVA TLLDLERRLT DAALSMADRL IGASFTRGKA ARERTFVATS RDVGRLMRLL AGTAGAVATA MKENGDALAA IDAAVGLDRL IAAKPQAAEI ADVAEEDPLV RAADRWMRLR KYGPMLIEAI DFKAARADDR TVAALTALRD LNRSGKRDLP KGTPMPFKKE WRRLVAGADG RLDRRLFETA LFAHLRNKWR SGDLWVERST HYRRFDSYLL PLDEARTIVA PLGLPCDPDA WLAARAERLD RRLKRLGRHL GRGTLEGVSL RNGKLSIAPV RADKNPEAEA LAARIGALMP RIRITELLHE VARETGFLSA FTNVRTRQPV EDGNALLAVI LADATNLGLS RMAEASQGVT RDQLFWTRDA FIRDETYKAA LGRIVDAHHA LPIAAVWGEG TTAASDGQFF RSGKRGDGAG QVNARHGIEP GYCFYTHTSD QHGPMRSVSM AAAEHEAPYV LDGLLHHGTG LTIAEHYTDT GGSSDHVHFL CDSLGIRFCP RLRDFPDRRL ACLEPPSRYP ALGGLLGKRV KADLIRAHWN DIVRLVATLK AGVVAPSTML KKLAAYERQN QLDLAIGEAG RLVRAEFMID WMEGPALRRR SQAGLNKSEQ RHTLASVVCT YGQGRIADRS QEVQEYRASG LNLVIAAIVY WNSTYMADAV AHLRRSGDPT PDRLLAHTSP VEWEHIGFSG DFLWHRAAMM PASRRRLNLT KTQPAAA |
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1. Vuilleumier S, Chistoserdova L, Lee MC, Bringel F, Lajus A, Zhou Y, Gourion B, Barbe V, Chang J, Cruveiller S, Dossat C, Gillett W, Gruffaz C, Haugen E, Hourcade E, Levy R, Mangenot S, Muller E, Nadalig T, Pagni M, Penny C, Peyraud R, Robinson DG, Roche D, Rouy Z, Saenampechek C, Salvignol G, Vallenet D, Wu Z, Marx CJ, Vorholt JA, Olson MV, Kaul R, Weissenbach J, Medigue C, Lidstrom ME.
Methylobacterium genome sequences: a reference blueprint to investigate microbial metabolism of C1 compounds from natural and industrial sources.. PLoS One. 2009;4(5):e5584. doi: 10.1371/journal.pone.0005584. Epub 2009 May 18. PubMed ID:
19440302
.