Mobile element type:
Transposon
Name:
TnEc1
Synonyms:
Tn7158
Accession:
TnEc1-KX555451
Family:
Tn3
Group:
Tn21
First isolate:
Yes
Partial:
ND
Evidence of transposition:
ND
Host Organism:
Escherichia coli
Date of Isolation:
2016
Country:
Hong kong
Molecular Source:
plasmid pMCR-11EC-P293
| Name | Coordinates | Direction | Length | Sequence |
|---|---|---|---|---|
| IRL | 1-50 | + | 50 | GGGGTCAGTT TGGATATCGA AAATTATTGT ACGTTAAGGC TACTTTTTAA |
| IRR | 3805-3854 | - | 50 | GGGGTCAGTT TGGATATCGA AAATTATTGT ACGTTAAGGT TGTTTTTTGA |
ORF Summary
| Name | Associated TE | Coordinates | Orientation | Class | Subclass |
|---|---|---|---|---|---|
| tnpR | TnEc1 | 47-688 | - | Accessory Gene | Resolvase |
| tnpA | TnEc1 | 837-3821 | + | Transposase |
ORF Details
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | tnpR | TnpR | TnEc1 | 213 | 47-688 | - |
|---|
| Class: | Accessory Gene | ||||||||||
| Subclass: | Resolvase | ||||||||||
| Sequence Family: | Serine Site-Specific Recombinase | ||||||||||
| Transposase Chemistry: | Serine | ||||||||||
| Protein Sequence: | MFIRAYLRAS TEDQFADRAK EMLEQFVQER GHKIASYYRE NISGTKLDRP ELGRLLMDSH RNDILLVEQI DRLTRLSNSD WITLKKQIEQ HELRIVSLDV PTSWQALSDK DPSQSDPITR AVITSINNML IDLMAAMSHK DWLSRRQRQK QGIERAHTLG KYRGKQADQE RHQKVLYYRQ VKKLSIRETA DATGYSTSQV CRIQALYREP TTD |
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| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | tnpA | TnpA | TnEc1 | 994 | 837-3821 | + |
|---|
| Class: | Transposase | ||||||||||
| Transposase Chemistry: | DDE | ||||||||||
| Protein Sequence: | MNMARRQILS QSERESLLAL PDDELTLTRM AYFSEHDLAL INAHRKPASR FGFAVLLCYL KNVGFAPDKK TPPSDALLKP IANRLKLADG LWSSYINGRE TTRREHLTEL YRYLGVKAFT NKIQQSCITH LLPMATRTDK GILLAEEMLA YLRQNKVMFP AIDVVERTCA EAMAGGDKIV FQTLNAPLTS AHREALDRLL ESSDNQPSRL TWLLQPPGKI NGKNVLQHID RLNSIESLAL PEGIDRTIHQ NRLLKLAREG RKMSSRDLTR FSAARRHAIL VCVLEDARAT LTDEIIELHE RILNSLFNKA KKTQAERLQQ TGRLIQLKLK QYIDIGQALS EAHDSGEDPW LAIEKILPWP EFIASLEETR HLARKNNFDP LHIITEKYST LRKYAPRMLS TLQLVATPAA QALADALLVI KDMYKKQLRK VPATAPLEFV PESWRKVVIT PTGIDRQYYE FCALSELKGA LRSGDIWVKG SRRYKNFDDY LIPEKDFDKL SPALPLPVSA DYHEYITNRM ILLQSKLEEV NKMATHGELP DVEISDKGVK ISPLDNCVPL QVSPLSELIY SMLPRPKITE ILDEVNSWTA FTRHFSHIKN DITRPDTRLL LTTILADGIN LGLTKMAEAC PGCTKSSLED IQAWYIRDET YSAALAELVN AQGKRPLAAF WGDGTTSSSD GQNFRTGNSG RYAGQINPKY GQEPGCQFYT HISDQYSPFY TCIISRVRDS THVLDGLLYH ESDLDIREHY TDTAGFTDHV FALMHLLGFA FCPRIRDLHD KKLFIKGKAD QYPALHSLIS PTRINLKEIE IHWREVLRLA TSIKQGTVTA SLMLRKLASY PKQNGLAKAL REIGRIERTL FMLDWFRDPA LRRRVQAGLN KGEARNALAR AVFMHRLGEI RDRKPENQSY RASGLTLLTA AISLWNTVYM ERAVDALKRK GMKINAQLLS HLSPLGWEHI NLTGDYIWKN NRIPTSGKFR RLRSVKIDKV KKQP |
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