Mobile element type:
Transposon
Name:
TnChe1
Synonyms:
Tn7155
Accession:
TnChe1-CP000391
Family:
Tn3
Group:
Tn163
First isolate:
Yes
Partial:
ND
Evidence of transposition:
Yes
Host Organism:
Chelativorans sp. BNC1
Date of Isolation:
2006
Country:
Molecular Source:
plasmid 2
| Name | Coordinates | Direction | Length | Sequence |
|---|---|---|---|---|
| IRL | 1-56 | + | 56 | GGGGTCGGAA CAAGAGCAGT GCAAAATCGT ACGCTAAGGT CGAACGGATC GTGAAC |
| IRR | 3759-3814 | - | 56 | GGGGTCGGAA CAAGAGCAGT GCCAAATCGT ACGCTAAGGC CGAACGGATG GTGAAC |
ORF Summary
| Name | Associated TE | Coordinates | Orientation | Class | Subclass |
|---|---|---|---|---|---|
| tnpR | TnChe1 | 34-627 | - | Accessory Gene | Resolvase |
| tnpA | TnChe1 | 782-3757 | + | Transposase |
ORF Details
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | tnpR | TnpR | TnChe1 | 197 | 34-627 | - |
|---|
| Class: | Accessory Gene | ||||||||||
| Subclass: | Resolvase | ||||||||||
| Sequence Family: | Serine Site-Specific Recombinase | ||||||||||
| Transposase Chemistry: | Serine | ||||||||||
| Protein Sequence: | MPRTFAYVRV STTGQTTENQ IQEIEAAGFH VEPRRIVTET VSGSTAIAQR RGFSRLMDKL ESGDILIVTK LDRLGRDAID VSTTVRTLAE MGVKVYCLAL GGADLASSAG TMTMNVLNAV AQFERDLLIE RTQSGLKRAK SEGKALGRPS RLSEKQKQDV RGDLAKGMSV SAIARKFATS RQTIMRVRDE GSRSVRP |
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| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | tnpA | TnpA | TnChe1 | 991 | 782-3757 | + |
|---|
| Class: | Transposase | ||||||||||
| Transposase Chemistry: | DDE | ||||||||||
| Protein Sequence: | MAKRTLLKVQ DRQELFCIPT DDDSLIRHYS LSPADRLEIE LRRRKHNQLG FALQLCLMRH PGRPLMPNET PPGAMLNYVA EQIDADPRLF DLYARREETR RDHIAHLLGY LEMRSPTADD RRTALMAAID AASTTDKGAV IAKAIIATFR ERRVLLPAVN MIERMGLAAR AVARRRAEHA LISDLDPEKL ETLDALLNID PAIGQTRFHW LRSAPDAPGA GNLVGLTERI AFLRSLGIDP RLQARIPSGR WEQMVREGDA TPAWLASDFN ASRRRATIVA QVIKLGQKLT DDAVMMFIKL MGRLFSQANN RKKQRHMNAR IETSRALRLF LDTIVALQAA NDNDVDPMTI LDRRVGWHRL LQIKPSLEAM VENGDMSPLV LAAEQHGNIR KFAGAFLQAF TFRSRRRHDP LLAAVATLKM LYVEGRRVLP DRVPVGHLGA NERKLVFEDG KPDRRLYEIA TFAHLRDRLH SRDVWVEGSR SFRPIDEDLM PKPTFVALKG QDQLGLGVPS DCAIWLAEVG QMMDFNLKRL AWRARFGKLD GVRMENGTLT VTPHTSDVPA AAEALNAEIT DMYPLVEVPD LLREVHEWTG FADQFTHVRT GDAPQNIAAI LAGVLADGTN LGPKRMAGAS KGISAHQIGW MRSFHARSET YRAAQACVTD AHTRHPHAQI WGDGTTASSD GQFFRASDRA ARRSDINLHY GSEPGSKFYS GLSDQYGYYS ILPISPTESE AVYVLDGLFD HDTILEIEEL FTDTGGASDH VFALFCLIGR RFAPRLRNIK DRKFHTFEKA DAYPTLANHI GAPINTALIM EHWDELLRLA ASITTRTVAP SAILKRLSAS SKSSDLAKAL RELGRIERTL FMIEWYSSPA LRRRCQAGLN KGEAAHKLKR AVFFHERGEI RDRSFDSQAF RASGLNLVVS AIVHWNTVYL SRATAHLRQR GRNIPDGLLK HVSPLSWEHI NLTGIYSWDT EQQLSEGFRP LRLPGRMLRA A |
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