Mobile element type:
Transposon
Name:
TnAli20
Synonyms:
Tn7136
Accession:
TnAli20-FQ311873.1
Family:
Tn3
Group:
Tn163
First isolate:
Yes
Partial:
ND
Evidence of transposition:
ND
Host Organism:
Azospirillum lipoferum 4B
Date of Isolation:
Country:
Molecular Source:
plasmid AZO_p5
| Name | Coordinates | Direction | Length | Sequence |
|---|---|---|---|---|
| IRL | 1-49 | + | 49 | GAGGGCATCG CGACATTTGT TCGGCAGACA ACGCTATAAG GTCGAACGC |
| IRR | 3781-3828 | - | 48 | GAGGGCATCG CGACATTTGT TCGGCAGACA ACGCTAAGGT CGAACGGA |
ORF Summary
| Name | Associated TE | Coordinates | Orientation | Class | Subclass |
|---|---|---|---|---|---|
| tnpR | TnAli20 | 90-668 | - | Accessory Gene | Resolvase |
| tnpA | TnAli20 | 808-3765 | + | Transposase |
ORF Details
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | tnpR | TnpR | TnAli20 | 192 | 90-668 | - |
|---|
| Class: | Accessory Gene | ||||||||||
| Subclass: | Resolvase | ||||||||||
| Sequence Family: | Serine Site-Specific Recombinase | ||||||||||
| Transposase Chemistry: | Serine | ||||||||||
| Protein Sequence: | MGDMLGYARV STGDQDVAGQ RLRLEQAGAL KVFTDVCSGK AKDRPGLEAL LAHARRGDTL AIVRLDRLGR SLAELLATVA MLKERGIGLL SLEERIDTTS AAGELVFHVF GAIAHFEQRL IAERTKDGIA PARARGKRPG REPVDMDKIK AALKLVEAGL SPTEAAKQLG LGRSTVYREM SLAGLQRPPY TS |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | tnpA | TnpA | TnAli20 | 985 | 808-3765 | + |
|---|
| Class: | Transposase | ||||||||||
| Transposase Chemistry: | DDE | ||||||||||
| Protein Sequence: | VARRQLLTEE ERRLLFGLPT DRDALARHYT FTRSDLDLIA SRRGNANRLG FAVQLALLRY PGLPLPHIGE PIDAVVGWVA EHLELPVTAF AEYARRSQTM TDHARDTVAA LGLRFPREAD LPDLIEAAAQ AAWISDQGMS IMTGTIAALR SAKIVLPSPA VIERAALAGR ARARKRAADA LVADLTAEQR DKLDKLLAVD PATGITSLTW LRTIPTAPKA DHVRDVIDKL HVVRGIGIDA EAQARVHETR FRQFAREGMA SPTYLIERCA PNRRRATLVA LLIDLENRLT DAALDMADKL IGGAFTRAKN NKEKTCVAKT KDVGRLMRLF HRTIEALSLA QESDGDAFAL VNEAVGWPQL LRVRGEVASL AELAEEDPLV RAADRYVTIR KFAPALLEAL TFKAARSKDP ILAAVELLKE LNRSGKRDIP ADAPMLFRKE WRRLVTKDGK PNRRLYETAV LATLRNKLRS GDVWVERSSN YRRFDSYLLP AAAAAPISAD LTLPATAEEW LGALGRDLDE QLKRFAQRLR DGQLEGVELR DERLHIAALK ATAPPEADVL ADRLDALLPR VRITELLHEV NRATGFAAAF TNLRTGESCD NENALLAVIL ADGTNLGLTR MAEASQGVTR DQLIWTADAC IRPETYQSAL ARIIDAHHRL PMAAVWGGGT TSSSDGQFFR SGKRGNVAGE VNARYGGSPG FSFYTHVSDQ HGPYHVRVIS AAAHEAPYVL DGLLHHGTGL KLDTHYVDTG GTSDHVFILA AMLGFRFCPR LRDFPERRLA SIEPSSCYPD LQPLLGRRVK VDVIREHWND VVRLVASLKA GTVAPSTMLK KLAAYERQNQ LDLALQELGR IERTLFMIRW LETPELRRSC HIGLNKGEQR HALAQAICTF KQGRIADRGS QAQQYRASGL NLLIAAIVYW NSTYMADAVG HLRAVGGTVP DDLLVHTSPV GWEHIGLSGD FLWGRAAAVP IGRRPLNLRR DRHAA |
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1. Wisniewski-Dye F, Borziak K, Khalsa-Moyers G, Alexandre G, Sukharnikov LO, Wuichet K, Hurst GB, McDonald WH, Robertson JS, Barbe V, Calteau A, Rouy Z, Mangenot S, Prigent-Combaret C, Normand P, Boyer M, Siguier P, Dessaux Y, Elmerich C, Condemine G, Krishnen G, Kennedy I, Paterson AH, Gonzalez V, Mavingui P, Zhulin IB.
Azospirillum genomes reveal transition of bacteria from aquatic to terrestrial environments.. PLoS Genet. 2011 Dec;7(12):e1002430. doi: 10.1371/journal.pgen.1002430. Epub 2011 Dec 22. PubMed ID:
22216014
.