Mobile element type:
Transposon
Name:
Tn6203
Synonyms:
Accession:
Tn6203-CP065412
Family:
Tn3
Group:
Tn21
First isolate:
Yes
Partial:
ND
Evidence of transposition:
ND
Host Organism:
Pseudomonas aeruginosa P33
Date of Isolation:
2020
Country:
China
Molecular Source:
chromosome
| Name | Coordinates | Direction | Length | Sequence |
|---|---|---|---|---|
| IRR | 1-38 | + | 38 | GGGGTCGTCT CAGAAAACGG AAAATAAAGC ACGCTAAG |
| IRR | 8216-8256 | - | 41 | GGGGTCGCCT CAGAAAACGG AAAATAAAGC ACGCTAAGCC G |
| Name | Associated TE | Coordinates | Orientation | Length | Sequence |
|---|---|---|---|---|---|
| res_site_III | Tn6203 | 4639-4670 | + | 32 | TGCGGCGAAA GGTCATAGAT TTCTTCCTGA CA |
ORF Summary
| Name | Associated TE | Coordinates | Orientation | Class | Subclass |
|---|---|---|---|---|---|
| merR | Tn6203 | 55-489 | - | Passenger Gene | Heavy Metal Resistance |
| merT | Tn6203 | 561-911 | + | Passenger Gene | Heavy Metal Resistance |
| merP | Tn6203 | 927-1202 | + | Passenger Gene | Heavy Metal Resistance |
| merA | Tn6203 | 1274-2959 | + | Passenger Gene | Heavy Metal Resistance |
| merD | Tn6203 | 2977-3342 | + | Passenger Gene | Heavy Metal Resistance |
| ufrM | Tn6203 | 3572-4561 | + | Passenger Gene | Other |
| tnpR | Tn6203 | 4691-5251 | + | Accessory Gene | Resolvase |
| tnpA | Tn6203 | 5254-8223 | + | Transposase |
ORF Details
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | merR | MerR | Tn6203 | 144 | 55-489 | - |
|---|
| Class: | Passenger Gene | ||||||||||
| Subclass: | Heavy Metal Resistance | ||||||||||
| Target: | Mercury | ||||||||||
| Protein Sequence: | MEKNLENLTI GVFAKAAGVN VETIRFYQRK GLLPEPDKPY GSIRRYGEAD VTRVRFVKSA QRLGFSLDEI AELLRLDDGT HCEEASSLAE HKLQDVREKM TDLARMETVL SELVFACHAR QGNVSCPLIA SLQGEKEPRG ADAV |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | merT | MerT | Tn6203 | 116 | 561-911 | + |
|---|
| Class: | Passenger Gene | ||||||||||
| Subclass: | Heavy Metal Resistance | ||||||||||
| Target: | Mercury | ||||||||||
| Protein Sequence: | MSEPQNGRGA LFTGGLAAIL ASACCLGPLV LIALGFSGAW IGNLTVLEPY RPIFIGAALV ALFFAWRRIY RPAQACKPGD VCAIPQVRAT YKLIFWVVAA LVLVALGFPY VMPFFY |
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| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | merP | MerP | Tn6203 | 91 | 927-1202 | + |
|---|
| Class: | Passenger Gene | ||||||||||
| Subclass: | Heavy Metal Resistance | ||||||||||
| Target: | Mercury | ||||||||||
| Protein Sequence: | MKKLFASLAI AAVVAPVWAA TQTVTLSVPG MTCSACPITV KKAISKVEGV SKVNVTFETR EAVVTFDDAK TSVQKLTKAT EDAGYPSSVK K |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | merA | MerA | Tn6203 | 561 | 1274-2959 | + |
|---|
| Class: | Passenger Gene | ||||||||||
| Subclass: | Heavy Metal Resistance | ||||||||||
| Target: | Mercury | ||||||||||
| Protein Sequence: | MTHLKITGMT CDSCAAHVKE ALEKVPGVQS AIVSYAKGAA QLALDPGTAP DALTAAVAGL GYKAMLADAP PTDNRTGLFD KVRGWMGAAD KGSGGERPLQ VAVIGSGGAA MAAALKAVEQ GAQVTLIERG TIGGTCVNVG CVPSKIMIRA AHIAHLRRES PFDGGMPPTP PTILRERLLA QQQARVEELR HAKYEGILDG NSAITVLHGE ARFKDDQSLI VSLNEGGERV VMFDRCLVAT GASPAMPPIP GLKESPYWTS TEALVSDTIP ERLAVIGSSV VALELAQAFA RLGSQVTILA RSTLFFREDP AIGEAVTAAF RAEGIKVLEH TQASQVAHVD GEFVLTTGQG EVRADKLLVA TGRTPNTRSL ALEAAGVAVN AQGAIVIDKG MRTSSPNIYA AGDCTDQPQF VYVAAAAGTR AAINMTGGDA AINLTAMPAV VFTDPQVATV GYSEAEAHHD GIETDSRTLT LDNVPRALAN FDTRGFIKLV IEEGSGRLIG VQVVAPEAGE LIQTAVLAIR NRMTVQELAD QLFPYLTMVE GLKLAAQTFS KDVKQLSCCA G |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | merD | MerD | Tn6203 | 121 | 2977-3342 | + |
|---|
| Class: | Passenger Gene | ||||||||||
| Subclass: | Heavy Metal Resistance | ||||||||||
| Target: | Mercury | ||||||||||
| Protein Sequence: | MNAYTVSRLA LEAGVSVHIV RDYLLRGLLR PVACTTGGYG LFDDAALQRL CFVRAAFEAG IGLDALARLC RALDAADCDE TAAQLAVLSQ FVERRREALA DLEVQLAAMP TAPAQQAESL P |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | ufrM | UfrM | Tn6203 | 329 | 3572-4561 | + |
|---|
| Class: | Passenger Gene | ||||||||||
| Subclass: | Other | ||||||||||
| Sequence Family: | EAL (Pfam:PF00563)||DUF3330 (Pfam:PF11809) | ||||||||||
| Comment: | similar to urfM from E.coli | ||||||||||
| Protein Sequence: | MSASQPIEWT VAQLAQAVER GQLELHYQPI VDLRSEQIVG AEALLRWRHP TLGLLPPGQF LPVIESSGLM PEIGAWVLGA ACRQMRDWRV LAWQPFRLAV NVAASQVGPD FDKWVKGVLA DAGLPAAYLE IELTESVAFG DPAIFPALEA LRQIGVRFAA DDFGTGYSCL QHLKCCPIST LKIDQSFVAG LANDHRDQTI VRTVIQLAHG LGMEVVAEGV ETSASLDLLR QADCDTGQGF LFAKPMPAAA FAVFVSQWRG ATMNANDPTA TSCCVCCKEI PLDAAFTPEG AEYVEHFCGL ECYQRFQARA KTGSETDADP NACDSSLSD |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | tnpR | TnpR | Tn6203 | 186 | 4691-5251 | + |
|---|
| Class: | Accessory Gene | ||||||||||
| Subclass: | Resolvase | ||||||||||
| Sequence Family: | Serine Site-Specific Recombinase | ||||||||||
| Transposase Chemistry: | Serine | ||||||||||
| Protein Sequence: | MQGQRIGYVR VSSFDQNPER QLEHVEVGRV FTDKASGKDT QRPELDSLLA FVREGDTVVV HSMDRLARNL DDLRRLVQKL TKRGVRIEFV KESLTFTGED SPMANLMLSV MGAFAEFERA LIRERQREGI ALAKQRGAYR GRKKSLSGEQ IAELKRRVTA GEQKAKLARE FGVSRETLYQ YLKLDQ |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | tnpA | TnpA | Tn6203 | 989 | 5254-8223 | + |
|---|
| Class: | Transposase | ||||||||||
| Transposase Chemistry: | DDE | ||||||||||
| Protein Sequence: | MPRRSILSAA ERESLLALPD TKDDLIRHYT FSDTDLSIIR QRRGPANRLG FAVQLCYLRF PGIFLGVDQA PSLPLLKLVA DQLKVGVESW DDYGQREQTR REHLVELQTV FGFQPFTMSH YRQAVHTLTD LAMQTDKGIV LASTLVEHLR RQSIILPALN AIERASAEAI TRANRRIYDA LAEPLSDTHR RRLDDLLRRR DNGKTTWLAW LRQSPVKPNS RHMLEHIERL KAWQALDLPS GIERSVHQNR LLKIAREGGQ MTPADLAKFE PQRRYATLVA LAIEGMATVT DEIIDLHDRI LGKLFNAAKN KHQQQFQASG KAINAKVRLF GRIGQALIEA KQAGRDPFAA IEAVMSWDAF AESVTEAQKL AQPDDFDFLH RIGESYATLR RYAPEFLAVL KLRAAPAAKN VLDAIEVLRG MNTDNARKVP ADAPTDFIKP RWQKLVMTDA GIDRRYYELC ALSELKNSLR SGDIWVQGSR QFKDFEDYLV PPAKFASLKQ SSALPLAVAT DCDQYLHDRL TLLEAQLATV NRMAAANDLP NAIITESGLK ITPLDAAVPD TAQALIDQTA MILPHVKITE LLLEVDEWTG FTRHFTHLKS GDLAKDKNLL LTTILADAIN LGLTKMAESC PGTTYAKLAW LQAWHTRDET YSTALAELVN AQFRHPFAEH WGDGTTSSSD GQNFRTGSKA ESTGHINPKY GSSPGRTFYT HISDQYAPFH TKVVNVGVRD STYVLDGLLY HESDLRIEEH YTDTAGFTDH VFALMHLLGF RFAPRIRDLG DTKLFIPKGD TAYDALKPMI SSDRLNIKAI RAHWDEILRL ATSIKQGTVT ASLMLRKLGS YPRQNGLAIA LRELGRIERT LFILDWLQSV ELRRRVHAGL NKGEARNALA RAVFFNRLGE IRDRSFEQQR YRASGLNLVT AAVVLWNTVY LERAAHALRG NGHAVDDALL QYLSPLGWEH INLTGDYLWR SSAKIGAGKF RPLRPLQPA |
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