Mobile element type:
Transposon
Name:
Tn6138
Synonyms:
Accession:
Tn6138-AB610649.1
Family:
Tn3
Group:
Tn163
First isolate:
Yes
Partial:
ND
Evidence of transposition:
ND
Host Organism:
Sphingobium japonicum UT26
Date of Isolation:
2011
Country:
Japan
Molecular Source:
plasmid pCHQ1
| Name | Coordinates | Direction | Length | Sequence |
|---|---|---|---|---|
| IRL | 1-45 | + | 45 | GGGGTGACTA CACGAAAGTG ACGTATCTGC ACGCTAAGAG CGAAC |
| IRR | 4570-4614 | - | 45 | GGGGTGACTA CACGAAAGTG ACGCATCCGC ACGCTAAGCG CGAAC |
ORF Summary
| Name | Associated TE | Coordinates | Orientation | Class | Subclass |
|---|---|---|---|---|---|
| sdr-family | Tn6138 | 124-912 | - | Passenger Gene | Other |
| tnpR | Tn6138 | 909-1517 | - | Accessory Gene | Resolvase |
| tnpA | Tn6138 | 1600-4557 | + | Transposase |
ORF Details
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | sdr-family | Sdr-family | Tn6138 | 262 | 124-912 | - |
|---|
| Class: | Passenger Gene | ||||||||||
| Subclass: | Other | ||||||||||
| Function: | oxidoreductase activity (GO:0016491) | ||||||||||
| Sequence Family: | SDR-family | ||||||||||
| Comment: | short-chain dehydrogenase/reductase (SDR) family protein (UniProt ID:4YYA1) | ||||||||||
| Protein Sequence: | MKPLPIQNSW VLVTGASTGL GRASALRLAA SYQAKPLIVG RRLDNLRELQ SEIGERFNVP CEIIVADQRE IEGREKIAAK VIELKVNAAF LAAGLTSAGP FDASRADAYA EVIGTNVAGF TDLLARLIAI FRQQPFESSI IAVSSLAGET SVPFQAVYGA SKAYVSTLMR ALSIELAGTG VSVGSFAPGG IDTDMAALSD LKWGKLGLMN VDRCATLAVD ALVHRRSFAI PGMGNRLTYL ASRALPRSLV SRLAALPYRR PQ |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | tnpR | TnpR | Tn6138 | 202 | 909-1517 | - |
|---|
| Class: | Accessory Gene | ||||||||||
| Subclass: | Resolvase | ||||||||||
| Function: | recombinase activity (GO:0000150) | ||||||||||
| Sequence Family: | Serine Site-Specific Recombinase | ||||||||||
| Transposase Chemistry: | Serine | ||||||||||
| Comment: | UniProt accession: D4YYA0 | ||||||||||
| Protein Sequence: | MAIRTRSQND GKTDTIGQHV ALIGYARVST ADQKLALQLD ALSAAGCDRI FDDYASGAKA DRPGLAEALT YLRTGDTLVV WKLDRLGRSM SHLIEKVGEL AARGVGFRSL TEQIDTTTSG GMLVFNIFGS LAQFERDLIR ERTHAGLRAA RERGSQGGRR PVVTPDKLRK ARAHIAAGLT VREAAARLKI GKTALYKALE SA |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | tnpA | TnpA | Tn6138 | 985 | 1600-4557 | + |
|---|
| Class: | Transposase | ||||||||||
| Transposase Chemistry: | DDE | ||||||||||
| Protein Sequence: | MARRRLVSAE IWAGHYGAPL DEREIARHYT LTGDDLEIVG RRRGDATRLG YAMLLLYMRW PGRALEAGEV PPAPVLAYVA QQLGVAPEAF ADYAHRDQTR REHLVEIRRS HGFRIFDRKA FHEVVAFSIP IAQTIVHPGQ MAGVIVDELR RRQILLPSSS VLEAVLRRAR QQAEQLTYEV LTNGLRPDTL QGLDDLLARR TGQAATWLSW LRNAPQSPAA RNILRLIERL THIRALDLDR ARADMIPALT FDRLADEGSR ITPQHLGELN ALRRHATLAA QGIRLEESLT DATLTMFDKL LGSMSRRAEN RTRDKALKTV RELQGHLRTL TGSCRILIEA RTNGVDSLAQ IEALDWQRFA VAVARAEVLG RPETVDRTAE LIERHRTVKL FAGAFLNTFE FRGAGAVQGL LSALTIIAEL YRTGKRRLPD RVPLRFVPSA WRPFVLRDGI VDRAAYELCA LSQLRERLRA GDIWVSGSRQ FRDFDSYLIP PATFDALREK GPLPLAIETD FDRHIEERRA RLDTAIEQVT VLARQGELPQ VRLDESGLII SPLKAATPPA TEIARRAAYD RLPRVKITDL LLEVDAWTGF SECFIHRRSG READDRNALL TVILADGINL GLTRMAETCR GASLRQLAHL HDWHISEAAY GEALGRLIDA HRAMPLAALW GDGTTSSSDG QQFHAGGRGA AIGDINARSG NEPGVAFYTH VSDRYDPFAT RVIAATAGEA PYVLDGLLYQ QTGLTIEEHY TDTGGASDHV FGLMPFFGYR FAPRLRDIKQ RRLHLLPGQE AGPLLAGMTA EPIALGHVAA HWDELLRFAT SIRTGTATAS AMLRRLSAYP RQNGLALAMR ELGRLERSIF MLDWLRDIDL RRRTQAGLNK GEARNALARA LFFNQLGELR DRRFENQTYR ASGLNLLVAA IILWNTRYLE VALADIGTPD EIARHVAPLG WEHISLTGDY SWNVEDRPDP DVLRPLRAIS SLLAA |
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1. Nagata Y, Natsui S, Endo R, Ohtsubo Y, Ichikawa N, Ankai A, Oguchi A, Fukui S, Fujita N, Tsuda M.
Genomic organization and genomic structural rearrangements of Sphingobium japonicum UT26, an archetypal gamma-hexachlorocyclohexane-degrading bacterium.. Enzyme Microb Technol. 2011 Dec 10;49(6-7):499-508. doi: 10.1016/j.enzmictec.2011.10.005. Epub 2011 Nov 7. PubMed ID:
22142724
.