Mobile element type:
Transposon
Name:
Tn6137
Synonyms:
Accession:
Tn6137-AB610648.1
Family:
Tn3
Group:
Tn5393
First isolate:
Yes
Partial:
ND
Evidence of transposition:
ND
Host Organism:
Sphingobium japonicum
Date of Isolation:
2011
Country:
Japan
Molecular Source:
chr 2
| Name | Coordinates | Direction | Length | Sequence |
|---|---|---|---|---|
| IRL | 1-45 | + | 45 | GGGGTGACTG CACGAAAGTG ACTTATCTGC ACGCTAAGAG CGAAC |
| IRR | 3737-3781 | - | 45 | GGGGTGACTA CACGAAAGTG ACGCATCCGC ACGCTAAGCG CGAAC |
ORF Summary
| Name | Associated TE | Coordinates | Orientation | Class | Subclass |
|---|---|---|---|---|---|
| tnpR | Tn6137 | 34-627 | - | Accessory Gene | Resolvase |
| tnpA | Tn6137 | 767-3724 | + | Transposase |
ORF Details
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | tnpR | TnpR | Tn6137 | 197 | 34-627 | - |
|---|
| Class: | Accessory Gene | ||||||||||
| Subclass: | Resolvase | ||||||||||
| Function: | recombinaseactivity (GO:0000150) | ||||||||||
| Sequence Family: | Serine Site-SpecificRecombinase | ||||||||||
| Transposase Chemistry: | Serine | ||||||||||
| Protein Sequence: | MALIGYARVS TADQKLSLQL DALNAAGCDR IFDDHASGAK ADRPGLAEAL AYLRSGDTLV VWKLDRLGRS MSHLIEKVGE LATRGIGFRS LTENIDTTTS GGMLVFNIFG SLAQFERDLI RERTHAGLKA ARERGRPGGR RPVVTPDKLR KAREHIASGL TVREAAARLK IGKTALYKAL EATEKNTKSQ RSRSVRS |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | tnpA | TnpA | Tn6137 | 985 | 767-3724 | + |
|---|
| Class: | Transposase | ||||||||||
| Transposase Chemistry: | DDE | ||||||||||
| Protein Sequence: | MARRRLVSAE IWAGHYGAPL DEREIARHYT LTGDDLEIVG RRRGDATRLG YAMLLLYMRW PGRALEAGEV PPAPVLAYVA QQLGVAPEAF ADYAHRDQTR REHLVEIRRS HGFRIFDRKA FHEVVAFSIP IAQTIVHPGQ MAGVIVDELR RRQILLPSSS VLEAVLRRAR QQAEQLTYEV LTNGLRPDTL QGLDDLLARR TGQAATWLSW LRNAPQSPAA RNILRLIERL THIRALDLDR ARADMIPALT FDRLADEGSR ITPQHLGELN ALRRHATLAA QGIRLEESLT DATLTMFDKL LGSMSRRAEN RTRDKALKTV RELQGHLRTL TGSCRILIEA RTNGVDSLAQ IEALDWQRFA VAVARAEVLG RPETVDRTAE LIERHRTVKL FAGAFLNTFE FRGAGAVQGL LSALTIIAEL YRTGKRRLPD RVPLRFVPSA WRPFVLRDGI VDRAAYELCA LSQLRERLRA GDIWVSGSRQ FRDFDSYLIP PATFDALREK GPLPLAIETD FDRHIEERRA RLDTAIEQVT VLARQGELPQ VRLDESGLII SPLKAATPPA TEIARRAAYD RLPRVKITDL LLEVDAWTGF SECFIHRRSG READDRNALL TVILADGINL GLTRMAETCR GASLRQLAHL HDWHISEAAY GEALGRLIDA HRAMPLAALW GDGTTSSSDG QQFHAGGRGA AIGDINARSG NEPGVAFYTH VSDRYDPFAT RVIAATAGEA PYVLDGLLYQ QTGLTIEEHY TDTGGASDHV FGLMPFFGYR FAPRLRDIKQ RRLHLLPGQE AGPLLAGMTA EPIALGHVAA HWDELLRFAT SIRTGTATAS AMLRRLSAYP RQNGLALAMR ELGRLERSIF MLDWLRDIDL RRRTQAGLNK GEARNALARA LFFNQLGELR DRRFENQTYR ASGLNLLVAA IILWNTRYLE VALADIGTPD EIARHVAPLG WEHISLTGDY SWNVEDRPDP DVLRPLRAIS SLLAA |
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1. Nagata Y, Natsui S, Endo R, Ohtsubo Y, Ichikawa N, Ankai A, Oguchi A, Fukui S, Fujita N, Tsuda M.
Genomic organization and genomic structural rearrangements of Sphingobium japonicum UT26, an archetypal gamma-hexachlorocyclohexane-degrading bacterium.. Enzyme Microb Technol. 2011 Dec 10;49(6-7):499-508. doi: 10.1016/j.enzmictec.2011.10.005. Epub 2011 Nov 7. PubMed ID:
22142724
.