Mobile element type:
Transposon
Name:
Tn6136
Synonyms:
Accession:
Tn6136-AB610647.1
Family:
Tn3
Group:
Tn163
First isolate:
Yes
Partial:
ND
Evidence of transposition:
ND
Host Organism:
Sphingobium japonicum
Date of Isolation:
2011
Country:
Japan
Molecular Source:
plasmid pIP1202
| Name | Coordinates | Direction | Length | Sequence |
|---|---|---|---|---|
| IRL | 1-45 | + | 45 | GGGGTGACTG CACGAAAGTG ACTTATCTGC ACGCTAAGAG CGAAC |
| IRR | 3737-3781 | - | 45 | GGGGTGACTA CACGAAAGTG ACGTATCTGC ACGCTAAGGG CGAAC |
ORF Summary
| Name | Associated TE | Coordinates | Orientation | Class | Subclass |
|---|---|---|---|---|---|
| tnpR | Tn6136 | 34-627 | - | Accessory Gene | Resolvase |
| tnpA | Tn6136 | 767-3724 | + | Transposase |
ORF Details
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | tnpR | TnpR | Tn6136 | 197 | 34-627 | - |
|---|
| Class: | Accessory Gene | ||||||||||
| Subclass: | Resolvase | ||||||||||
| Function: | recombinaseactivity (GO:0000150) | ||||||||||
| Sequence Family: | Serine Site-SpecificRecombinase | ||||||||||
| Transposase Chemistry: | Serine | ||||||||||
| Protein Sequence: | MALIGYARVS TADQKLSLQL DALNAAGCDR IFDDHASGAK ADRPGLAEAL AYLRSGDTLV VWKLDRLGRS MSHLIEKVGE LATRGIGFRS LTENIDTTTS GGMLVFNIFG SLAQFERDLI RERTHAGLKA ARERGRPGGR RPVVTPDKLR KAREHIASGL TVREAAARLK IGKTALYKAL EATEKNTKSQ RSRSVRS |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | tnpA | TnpA | Tn6136 | 985 | 767-3724 | + |
|---|
| Class: | Transposase | ||||||||||
| Function: | transposase activity (GO:0004803) | ||||||||||
| Transposase Chemistry: | DDE | ||||||||||
| Comment: | uniProt accession: D4YY99 (D4YY99_SPHJU) | ||||||||||
| Protein Sequence: | MARRRLVSLE IWAGHYDAPL DEREIARHYT LTSDDLEIVG RRRGDATRLG FAMLLLTMRW PGRALEAGEV PPAPVLGYVA RQLGVAPDAF ADYARRDQTR REHLVEIRRS HGFRIFDRDA FREVVAFSIP IAQTIIHPGQ MAGVIVDELR RRQILLPSSS ILEAVLRRAR QQAEQLTYEV LTNGLRPDTL QDLDDLLARR TGQAATWLSW LRNASQSPAA RNILRLIERL AYVRALGLDR GRADMIPAST FDRLADEGSR ITPQHLGELN ALRRHATLAA TGIRLEEDLT DATLTMFDKL LGSMVRRAEN RTRDKALKTV RELQGHLRTL TGSCRILIDA RTNGVDSLAQ IEALDWQRFA VSVEQAEVLS RPETVDRTAE LIERHRTVKL FAGAFLNTFE FRGAGAVQGL LSALAIIAEL YRTGKRRLPD RVPLRFVPSA WRPFILRDGI VDRAAYELCA LSQLRERLRA GDIWVAGSRQ FRDFDSYLIP PATYAALREK GPLPLAIETD FERHIEERRT RLDTAIEQVT VLARQGELPQ VRLDENGLII SPLKAATPPA TEIARRAAYD RLPRVKITDL LLEVDAWTGF SECFIHRRSG READDRNALL TVILADGINL GLTRMAETCR GASLRQLAHL HDWHISEAAY GEALGRLINA HRTMPLAALW GDGTTSSSDG QQFHAGGRGA AIGDINARSG NEPGVAFYTH VSDRYDPFAS RVIAATAGEA PYVLDGLLYH QTGMTIEEHY TDTGGASDHV FGLMPFFGYR FAPRLRDIKE RRLHLLPGQE SGPLLAGMTT EPIALGHVAA HWDELLRFAT SIRTGTVTAS AMLRRLSGYP RQNGLALALR ELGRLERSIF MLDWLRDIDL RRRTQAGLNK GEARNALARA LFFNQLGELR DRRFENQTYR ASGLNLLVAA IILWNTRYLE MALADIGTPD EIARHVAPLG WEHISLTGDY SWNVEDRPDP DALRPLRAVS SLLAA |
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1. Nagata Y, Natsui S, Endo R, Ohtsubo Y, Ichikawa N, Ankai A, Oguchi A, Fukui S, Fujita N, Tsuda M.
Genomic organization and genomic structural rearrangements of Sphingobium japonicum UT26, an archetypal gamma-hexachlorocyclohexane-degrading bacterium.. Enzyme Microb Technol. 2011 Dec 10;49(6-7):499-508. doi: 10.1016/j.enzmictec.2011.10.005. Epub 2011 Nov 7. PubMed ID:
22142724
.