Mobile element type:
Transposon
Name:
Tn6134
Synonyms:
Accession:
Tn6134-AB610645.1
Family:
Tn3
Group:
Tn163
First isolate:
Yes
Partial:
ND
Evidence of transposition:
ND
Host Organism:
Sphingobium japonicum
Date of Isolation:
2011
Country:
Japan
Molecular Source:
genomic DNA UT26
| Name | Coordinates | Direction | Length | Sequence |
|---|---|---|---|---|
| IRL | 1-45 | + | 45 | GGGGTGACTA CACGAAAGTG ACGTATCTGC ACGCTAAGAG CGAAC |
| IRR | 4570-4614 | - | 45 | GGGGTGACTA CACGAAAGTG ACGTATCTGC ACGCTAAGGG CGAAC |
ORF Summary
| Name | Associated TE | Coordinates | Orientation | Class | Subclass |
|---|---|---|---|---|---|
| sdr-family | Tn6134 | 124-912 | - | Passenger Gene | Other |
| tnpR | Tn6134 | 909-1517 | - | Accessory Gene | Resolvase |
| tnpA | Tn6134 | 1600-4557 | + | Transposase |
ORF Details
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | sdr-family | Sdr-family | Tn6134 | 262 | 124-912 | - |
|---|
| Class: | Passenger Gene | ||||||||||
| Subclass: | Other | ||||||||||
| Function: | oxidoreductase activity (GO:0016491) | ||||||||||
| Sequence Family: | SDR-family | ||||||||||
| Comment: | short-chain dehydrogenase/reductase (SDR) family protein (UniProt ID:4YYA1) | ||||||||||
| Protein Sequence: | MKPLPIQNSW VLVTGASTGL GRASALRLAA SYQAKPLIVG RRLDNLRELQ SEIGERFNVP CEIIVADQRE IEGREKIAAK VIELKVNAAF LAAGLTSAGP FDASRADAYA EVIGTNVAGF TDLLARLIAI FRQQPFESSI IAVSSLAGET SVPFQAVYGA SKAYVSTLMR ALSIELAGTG VSVGSFAPGG IDTDMAALSD LKWGKLGLMN VDRCATLAVD ALVHRRSFAI PGMGNRLTYL ASRALPRSLV SRLAALPYRR PQ |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | tnpR | TnpR | Tn6134 | 202 | 909-1517 | - |
|---|
| Class: | Accessory Gene | ||||||||||
| Subclass: | Resolvase | ||||||||||
| Function: | recombinase activity (GO:0000150) | ||||||||||
| Sequence Family: | Serine Site-Specific Recombinase | ||||||||||
| Transposase Chemistry: | Serine | ||||||||||
| Comment: | UniProt accession: D4YYA0 | ||||||||||
| Protein Sequence: | MAIRTRSQND GKTDTIGQHV ALIGYARVST ADQKLALQLD ALSAAGCDRI FDDYASGAKA DRPGLAEALT YLRTGDTLVV WKLDRLGRSM SHLIEKVGEL AARGVGFRSL TEQIDTTTSG GMLVFNIFGS LAQFERDLIR ERTHAGLRAA RERGSQGGRR PVVTPDKLRK ARAHIAAGLT VREAAARLKI GKTALYKALE SA |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | tnpA | TnpA | Tn6134 | 985 | 1600-4557 | + |
|---|
| Class: | Transposase | ||||||||||
| Function: | transposase activity (GO:0004803) | ||||||||||
| Transposase Chemistry: | DDE | ||||||||||
| Comment: | uniProt accession: D4YY99 (D4YY99_SPHJU) | ||||||||||
| Protein Sequence: | MARRRLVSLE IWAGHYDAPL DEREIARHYT LTSDDLEIVG RRRGDATRLG FAMLLLTMRW PGRALEAGEV PPAPVLGYVA RQLGVAPDAF ADYARRDQTR REHLVEIRRS HGFRIFDRDA FREVVAFSIP IAQTIIHPGQ MAGVIVDELR RRQILLPSSS ILEAVLRRAR QQAEQLTYEV LTNGLRPDTL QDLDDLLARR TGQAATWLSW LRNASQSPAA RNILRLIERL AYVRALGLDR GRADMIPAST FDRLADEGSR ITPQHLGELN ALRRHATLAA TGIRLEEDLT DATLTMFDKL LGSMVRRAEN RTRDKALKTV RELQGHLRTL TGSCRILIDA RTNGVDSLAQ IEALDWQRFA VSVEQAEVLS RPETVDRTAE LIERHRTVKL FAGAFLNTFE FRGAGAVQGL LSALAIIAEL YRTGKRRLPD RVPLRFVPSA WRPFILRDGI VDRAAYELCA LSQLRERLRA GDIWVAGSRQ FRDFDSYLIP PATYAALREK GPLPLAIETD FERHIEERRT RLDTAIEQVT VLARQGELPQ VRLDENGLII SPLKAATPPA TEIARRAAYD RLPRVKITDL LLEVDAWTGF SECFIHRRSG READDRNALL TVILADGINL GLTRMAETCR GASLRQLAHL HDWHISEAAY GEALGRLINA HRTMPLAALW GDGTTSSSDG QQFHAGGRGA AIGDINARSG NEPGVAFYTH VSDRYDPFAS RVIAATAGEA PYVLDGLLYH QTGMTIEEHY TDTGGASDHV FGLMPFFGYR FAPRLRDIKE RRLHLLPGQE SGPLLAGMTT EPIALGHVAA HWDELLRFAT SIRTGTVTAS AMLRRLSGYP RQNGLALALR ELGRLERSIF MLDWLRDIDL RRRTQAGLNK GEARNALARA LFFNQLGELR DRRFENQTYR ASGLNLLVAA IILWNTRYLE MALADIGTPD EIARHVAPLG WEHISLTGDY SWNVEDRPDP DALRPLRAVS SLLAA |
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1. Nagata Y, Natsui S, Endo R, Ohtsubo Y, Ichikawa N, Ankai A, Oguchi A, Fukui S, Fujita N, Tsuda M.
Genomic organization and genomic structural rearrangements of Sphingobium japonicum UT26, an archetypal gamma-hexachlorocyclohexane-degrading bacterium.. Enzyme Microb Technol. 2011 Dec 10;49(6-7):499-508. doi: 10.1016/j.enzmictec.2011.10.005. Epub 2011 Nov 7. PubMed ID:
22142724
.