Mobile element type:
Transposon
Name:
Tn6122
Synonyms:
Accession:
Tn6122-JN127372.1
Family:
Tn3
Group:
Tn163
First isolate:
Yes
Partial:
ND
Evidence of transposition:
ND
Host Organism:
Paracoccus halophilus JCM 14014
Date of Isolation:
2012
Country:
China
Molecular Source:
plasmid pHAL1
| Name | Coordinates | Direction | Length | Sequence |
|---|---|---|---|---|
| IRL | 1-39 | + | 39 | GGGGTGGATT CCGGTAGGGG GCAGGATCGT ATCACAAGG |
| IRR | 3754-3792 | - | 39 | GGGGTGGATT CCGGTAGGGG GCAGGATCGT ATCACAAGG |
| Name | Associated TE | Coordinates | Orientation | Length | Sequence |
|---|---|---|---|---|---|
| res | Tn6122 | 641-734 | + | 94 | TTGAACCCCC TTTGAATCGG GCCTTGCAAG TCGTTGGTTT TGCTGGTGCG GGAATTGTCC TGAACAGACT AATGACTAAC AAGGACAAAC TCGT |
ORF Summary
| Name | Associated TE | Coordinates | Orientation | Class | Subclass |
|---|---|---|---|---|---|
| tnpR | Tn6122 | 32-640 | - | Accessory Gene | Resolvase |
| tnpA | Tn6122 | 735-3638 | + | Transposase |
ORF Details
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | tnpR | TnpR | Tn6122 | 202 | 32-640 | - |
|---|
| Class: | Accessory Gene | ||||||||||
| Subclass: | Resolvase | ||||||||||
| Sequence Family: | Serine Site-Specific Recombinase | ||||||||||
| Transposase Chemistry: | Serine | ||||||||||
| Protein Sequence: | MGQRAAIYAR VSTSDQSCER QVTELTAFAE RGGYDVVGVF KEKASGASDN RVARNRVLDL AQARQIDAIL VSELSRWGRS TQDLLDTLNR LAGWKVSVVA MSGMTFEVET PHGRMMATML AGIAQFERDL LSERVKSGLA AARARGKKLG RQPGQRPKSD KLAPKVIQAV EDGRSYRWIA RDLGISKNTV LDIMKRQRQS SL |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | tnpA | TnpA | Tn6122 | 967 | 735-3638 | + |
|---|
| Class: | Transposase | ||||||||||
| Transposase Chemistry: | DDE | ||||||||||
| Protein Sequence: | MPRRSILTAR QRAALFDLPT DEATILYHYT LADDDLEFIR TRRHARNRLG FALQLCAFRY PGRLLASGEV IPEAISSFIA AQLGEEMDEL CRYAETDVTR RRHLVDLRQL YGFKMFSGHR ARELKAWLAG EAEVATSNHD LARRFVEECR RTQTILPGVS VIERLCADAL VAAERRIESA IVNRLDEDRK ARLDTLLTEM VDGTVSRFVW LRQFEVGQNS ADVGRLLDRL EVLRDLNISL DILAGIPPHR VTGLRRQGER YFADGLRDIS SDRRLAILAV CAVEWCAAIS DAVVETHDRI VGKTWQGAKR LCDAKIADAK AAVQDTLRAF KSLGSALLDA RSDGSSLDQA TELACGWGRL EGLVATAAEL THTMAADPLT HVGQGYLRFR RYAPRMLRVL DIEAAGIAAP LLQATALIAD DEKPETRPVG FLRRGSKWHR HLNAAAGDGH RLWEVAVLFH LREAFRSGDI WLLHSRRYAD LKQALVPAEA VEGAPRLTVP LDPETWLADR KARMTDGLAR LAKAARAGAI PGGSIENGVL KTDRLSAAVP QEADELVLDL YDRLPTIRIT ELLQEVDADI GFTEAFTHLQ TGAPCKDQIG MLTVLLAEGL NLGLSKMAEA TSTHDYFQLS RLSRWHMESD AINQALALVI EAQARLPMAQ FWGGGVTASS DGQFFPAARQ GEAMNLINAK YGSEPGLKAY THVSDQFGPF ATQNIPATVS EAPYILDGLL MNEAGQKISE QYADTGGFTD QVFAVTALLS YRFIPRIRDL PSTRLYLFDP ATAPNELRGL IGSKIREGVI VQNWPGVLRA VATMATGVLP PSQLLKKFAA YPRQHELAVA LREIGRIERT LFIIEWLLDA DMQRRAQIGL NKGEAHHALK NALRIGRQGE IRDRTAEGQH YRMAGLNLLA AIIIYWNTKH LGQAVAARQR AGLNCAPNLL AHISPLGWAH ILLTGEYRWR RQTGASL |
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1. Dziewit L, Baj J, Szuplewska M, Maj A, Tabin M, Czyzkowska A, Skrzypczyk G, Adamczuk M, Sitarek T, Stawinski P, Tudek A, Wanasz K, Wardal E, Piechucka E, Bartosik D.
Insights into the transposable mobilome of Paracoccus spp. (Alphaproteobacteria).. PLoS One. 2012;7(2):e32277. doi: 10.1371/journal.pone.0032277. Epub 2012 Feb 16. PubMed ID:
22359677
.