Mobile element type:
Transposon
Name:
Tn5501.8
Synonyms:
Accession:
Tn5501.8-KC771559
Family:
Tn3
Group:
Tn3000
First isolate:
Yes
Partial:
ND
Evidence of transposition:
ND
Host Organism:
Comamonas sp. 7D-2
Date of Isolation:
2013
Country:
China
Molecular Source:
plasmid pBHB
| Name | Coordinates | Direction | Length | Sequence |
|---|---|---|---|---|
| IRL | 1-38 | + | 38 | GGGGTTCTAA GCCGGAACCG CCGAAAATTC CGTCAGCC |
| IRR | 27855-27892 | - | 38 | GGGGTTCTAA GCCAGAACCG CCGAAATTTC CGTCATCC |
| Name | Associated TE | Coordinates | Orientation | Length | Sequence |
|---|---|---|---|---|---|
| res | Tn5501.8 | 24103-24233 | + | 131 | GCCTGTCGGA AAACATTTGT TTTTCGACAG GCCTTCAACG GTCCTCTGCA CCAACCTCCG AGTGGCCGCA AAATTGTGCG GAAAACTCTG TCGCCAGACG CTACCATACG GAAACCTCGT CTTAATGGTT T |
| res_site_I | Tn5501.8 | 24103-24131 | + | 29 | GCCTGTCGGA AAACATTTGT TTTTCGACA |
| res_site_II | Tn5501.8 | 24165-24208 | + | 44 | TGGCCGCAAA ATTGTGCGGA AAACTCTGTC GCCAGACGCT ACCA |
| res_site_III | Tn5501.8 | 24209-24233 | + | 25 | TACGGAAACC TCGTCTTAAT GGTTT |
ORF Summary
| Name | Associated TE | Coordinates | Orientation | Class | Subclass |
|---|---|---|---|---|---|
| Re/Si-specific NAD(P)(+) transhyd beta | Tn5501.8 | 721-2145 | - | Passenger Gene | Other |
| Re/Si-specific NAD(P)(+) transhyd alpha | Tn5501.8 | 2464-3615 | - | Passenger Gene | Other |
| 4Fe-4S dicluster | Tn5501.8 | 3655-6870 | - | Passenger Gene | Other |
| tripartite tricarboxylate transporter | Tn5501.8 | 6893-7885 | - | Passenger Gene | Other |
| tnpA | Tn5501.8 | 9594-9986 | + | Accessory Gene | Helper |
| tnpB | Tn5501.8 | 9983-10318 | + | Accessory Gene | Helper |
| tnpC | Tn5501.8 | 10393-12108 | + | Transposase | |
| osmC | Tn5501.8 | 12798-14006 | + | Passenger Gene | Other |
| tyrosine-type recombinase/integrase | Tn5501.8 | 14205-14549 | + | Passenger Gene | Other |
| WP_015586010.1 | Tn5501.8 | 14626-14886 | + | Passenger Gene | Hypothetical |
| istB | ISCsp4 | 16108-16923 | - | Accessory Gene | ATPase Transposition Helper |
| istA | ISCsp4 | 16916-18433 | - | Transposase | |
| lysR family | Tn5501.8 | 19085-20002 | - | Passenger Gene | Other |
| bhbF2 | Tn5501.8 | 20137-21318 | + | Passenger Gene | Other |
| bhbD2 | Tn5501.8 | 21315-21734 | + | Passenger Gene | Other |
| bhbE2 | Tn5501.8 | 21727-22566 | + | Passenger Gene | Other |
| parE | Tn5501.8 | 23443-23727 | - | Passenger Gene | Toxin |
| parD | Tn5501.8 | 23724-24002 | - | Passenger Gene | Antitoxin |
| tnpR | Tn5501.8 | 24256-24834 | + | Accessory Gene | Resolvase |
| tnpA | Tn5501.8 | 24831-27860 | + | Transposase |
ORF Details
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | Re/Si-specific NAD(P)(+) transhyd beta | Re/Si-specific NAD(P)(+) transhyd beta | Tn5501.8 | 474 | 721-2145 | - |
|---|
| Class: | Passenger Gene | ||||||||||
| Subclass: | Other | ||||||||||
| Comment: | NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta | ||||||||||
| Protein Sequence: | MSMNLVTLLY LIASICFIQA LKGLSHPTSS IRGNLFGMSG MAIAILTTAA LIVEIAGGAA QGMVWVLVGL LLGGGLGAVM AQRVEMTKMP ELVAFMHSMI GLAAVFIAIA AVAEPWAFGI TAKGSPIPAG NRLELFLGAA IGAITFSGSV IAFGKLSGKY KFRLFRGAPV QFAGQHMLNL ALGLATIALG LIFTFTENWS AFFLMLALSF VLGVTIIIPI GGADMPVVVS MLNSYSGWAA AGIGFSLNNS MLIIAGSLVG SSGAILSYIM CKAMNRSFFS VILGGFGGET SAAAAGSGEQ RPVKSGSADD AAYILGNAET VIIVPGYGLA VARAQHAVNE LAEKLTHKGV TVKYAIHPVA GRMPGHMNVL LAEAEVPYDQ VFEMEDINGE FGQADVAIIL GANDVVNPVA LQKGSPIYGM PILEAYKAKT VIVNKRSMAA GYAGLDNELF YMDKTMMVFG DAKKVVEDMG KAIE |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | Re/Si-specific NAD(P)(+) transhyd alpha | Re/Si-specific NAD(P)(+) transhyd alpha | Tn5501.8 | 383 | 2464-3615 | - |
|---|
| Class: | Passenger Gene | ||||||||||
| Subclass: | Other | ||||||||||
| Comment: | Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha | ||||||||||
| Protein Sequence: | MLKFLSKRKE TRMQIGVPAE TEAGETRVAV TPETAKKLKA QGHVVRVQTG AGVAAAAPDA AYEAVGAEIC DAAGALGCEL VLKVRAPSAE ELALMKPGAA VVGMLNPFDA EGLHRLAAAG LTSFALEAAP RTTRAQSMDV LSSQANIAGY KAVMIAADRY QRFFPMLMTA AGTVKAARVV ILGVGVAGLQ AIATARRLGA VIEASDVRPS VKEQVESLGA KFIDVPYETQ EEKDAAEGVG GYARPMPASW LERQKAEVAK RVAQADIVIT TALIPGRAAP VLVTEEMVKS MKPGSVIVDL AAPQGGNCPL TEAGKTVIKH GVTLVGETNL PALVAADASA FYARNVLDFL KLVLPKEGPL NIDPSDDIVA ACLMTQGGEV KRK |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | 4Fe-4S dicluster | 4Fe-4S dicluster | Tn5501.8 | 1071 | 3655-6870 | - |
|---|
| Class: | Passenger Gene | ||||||||||
| Subclass: | Other | ||||||||||
| Comment: | 4Fe-4S dicluster domain-containing protein | ||||||||||
| Protein Sequence: | MRIFPHTQRA MHYGAYPSER LSRKASSSSH QSIHETGALQ PPPTNDSEST LAHSISRFMC ALDQVREGDH NKQRGEIPSD PMERSRHLKS AAYFLDTSIA GVSELNREHL LDLRIEHPTF RTATYEQSET KLRLRFNPNA VLRQMKRSMD LCEQGVEHHS HALVLMAEFP RDPQPEEAGA DWIVGMQQWR AALRAAETAA VLANYLRILG YSARSHTATT TDVNLLRLAV SSGLARVDHG RVLNPFVGDR FVLAAVTTDM ALDPDLPLAQ PSLLESFRAK GPSWWLGWSS PKNKWNAREF GAREYRYSRF PVESLKRVEE TTTFIDEARI PRVPKSSEFF LRAAFGDLGK APQEASKDGY SVAKAPLAAA LRLALNVYSV LQRGEPAKLK VEFPDRKNNA DLVKATLHFL GADLAGVSRA PDWVWYSHRQ DGTEMPVAHP FAATVMIDQG FETMEGASGD DWISSAQSMR TYMRAGLVCG VLADHLRRLG YGATAHSAAD SDVIQTPLVL LAGLGEVSRI GETILNPFLG PRSKTGVMTT DFPIEPDKAI DFGLQNFCES CNKCARECPS GAISAGPKVM FNGYEIWKAD VEKCTRYRMT NLAGAMCGRC MKACPWNLAG LVQEKPFRWA AMNLPIAAQW LAKLDDYLNR GEINPRKKWW WDITTERNGS VVAAKEVNVR GLNKHIRLKY EDQTLAAYPA PLAPLPLPMP SRVDREAGID AYKNLLTPDA YKTRISSGDT DNLVPGLRRL TEEPPVIVAK ISRRWASSKD GKIDIFEIVS SDGSPLPKFD AGAHIDITIT PEFIRQFSLA GDPADRSKYV LGILREDQGR GGSLKIHQML RPGVPVVVSA PRNHFPVMQD ARRHLLLAGG IGVTPLIAMG HELHSAGKDF VLYYKAKTRA QAAFIQELES VPWSNRVHFH FSDERRLDIA DVLRDYVPGN HVYTCGPAAF MDAVFDTAAA FGWDESSLHR EYFSVPEMDE REKLPFTLRL NSTGQVIPVS ATQSAVQALA SAGLQVDVKC SDGLCGVCAV PYLSGEVDHR DFVLSKEQRK VKMITCCSRA ATAEGEIVLN L |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | tripartite tricarboxylate transporter | Tripartite tricarboxylate transporter | Tn5501.8 | 330 | 6893-7885 | - |
|---|
| Class: | Passenger Gene | ||||||||||
| Subclass: | Other | ||||||||||
| Protein Sequence: | MSFSYLSIGR RALVTCLIPL STLALQATAW ASGDWPSKPI KLIVAFPPGS SPDVIGRALA PGLAEALKQP VVVENRAGVT GMIAAEAVAR SPADGYTFLM TSGSSVTISV HTLPKVPIDP MKDLVPVAST ARIELFLVSD ARQDFKSFSE LVAAAKARPG RLSYASPGNG SAPHVAAEMM MAETGITAVH IPYRGSSPAL QDLLGGVVQF AFDPGIGLEH VKAGKLRLLA VGSTKRSPLF PDTPTLQELG LKGFDSGTTH AIYAPAKTPA AIVERMNAEI NKQLASPQVI QTIRNLGAEP TPLSPADLAD QLRRDSARYA AIVKLRGIRE |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | tnpA | TnpA | Tn5501.8 | 130 | 9594-9986 | + |
|---|
| Class: | Accessory Gene | ||||||||||
| Subclass: | Helper | ||||||||||
| Sequence Family: | IS66_family | ||||||||||
| Comment: | mutation of tnpA in IS66 family members reduces tranposition by at least two orders of magnitude | ||||||||||
| Protein Sequence: | MHVNQKPRRR HSEQFKAQVL AACAEPGASV SAVALSFGVN ANLVHQWRRG RGFKAARTVP PCPVIEPAPR FVALSLPAPT PAPSPAAGAP APAIRVELKR GALGVNVIWP IAAAGDCTAW LRELTTDLLK |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | tnpB | TnpB | Tn5501.8 | 111 | 9983-10318 | + |
|---|
| Class: | Accessory Gene | ||||||||||
| Subclass: | Helper | ||||||||||
| Sequence Family: | IS66_family | ||||||||||
| Comment: | mutation of tnpB in IS66 family members reduces tranposition by at least two orders of magnitude | ||||||||||
| Protein Sequence: | MIRIDQLWLC TAPMDMRAGA ERLLSCVVQT TGAAHAHHGY LFANARATRI KLLVHDGFGV WCAARRLNAG HFAWPREAAA TPLSLTQAQF DALVVGLPWQ RLPEMSVITR L |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | tnpC | TnpC | Tn5501.8 | 571 | 10393-12108 | + |
|---|
| Class: | Transposase | ||||||||||
| Transposase Chemistry: | DDE | ||||||||||
| Protein Sequence: | MGMMRGMLSM RDLKAQDLQG LSPETVTALA AQMLERIEQQ AQEIDLQRRD LEVKQKLIER KDRDIAWRDA KLEKVNFELA RLKRWKFGAK SEAMTAEQRQ MFQDTLLEDE ADLEAQLAAL QAALPKTLSA PKTPRRRPRR QALPDHLRRV EHRHEPEDTN CTTPQCGQPM TRVGEDISER LDIVPAEFFV HRHIYGKWAC RCCQRQGIER LVQEPADAQI IDGGIAASGL VAHTLISRFV DHLPYYRQEA INARSGVHTP RSTLASQSGR AGAAMEPLYE AHKRFVLSCP VVHADETPVA MLDPGAGKTK RAYIWAYARG ELDGQRGVIY EFCLGRGSQY PVAFLGGAQG PPGSPIDEQA AWSGTLVCDQ YAGYDRVLDR RVYPQRIAAN CVAHARRKFD ELVGTSEVAK ETIKRIGWIY HVEGQFEGMD AQQRLVARDQ LTRPLWKELH VWLKLERGRV PDGGSIAGAI DYSLNSWTAL TRHLEDGAVP IDNNFIERQI KPWAMGRKAW LFCGSELAGQ RAAIVMSLVQ SAKLNGHDPW AYLRDVLERL PSHPNSRIDE LLPHRWKKPD A |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | osmC | OsmC | Tn5501.8 | 402 | 12798-14006 | + |
|---|
| Class: | Passenger Gene | ||||||||||
| Subclass: | Other | ||||||||||
| Protein Sequence: | MTQDLLTNSG KPLFFRVDNA AELGLHPPAE RRGQSLRTRI RSLTVMQKEA LVVNSHTGLA WRLCSDEGAY LMGHDVAPPP LAFLTTGMVS SYMNEILALA RQRNLKLRDI RLVQDNFYTM EGSAVQGTMV GGALPVELTA HIDSDVEPGE LTKLLQDATA ASPLNGLMRG RLDSRFSLVH NGREIEPGKL HRLSALPAKE GATAFDAARP AAGDWETLVQ RGAPSPKLSQ TTSGAGSGLA ESQSRRLHVR GICTLREDGV KQIEQHLYQP HGTVFKFLSD EGTRNGGGGR APDAASYISA GIGFCFMTQL GRYAKIVKKD LRDYRIVQDT FFSFGGASDG TGRAGEADPV ETHVYLTTGE DDAFARTALD MAEQTCFLHA FCRTDMKVRF RIATLVDGGA PA |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | tyrosine-type recombinase/integrase | Tyrosine-type recombinase/integrase | Tn5501.8 | 114 | 14205-14549 | + |
|---|
| Class: | Passenger Gene | ||||||||||
| Subclass: | Other | ||||||||||
| Comment: | putative Phage integrase | ||||||||||
| Protein Sequence: | MPLWKTTAKA VRDWLHLNPQ LQAESPLLPR RDGKLMTRAN VAQRLKLAVQ IAFQKYRDLA NISVSPHMVR HATAMSLLQS GADPCEIALW LGHESPATTH MYVEADLAMK ERAL |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | WP_015586010.1 | WP_015586010.1 | Tn5501.8 | 86 | 14626-14886 | + |
|---|
| Class: | Passenger Gene | ||||||||||
| Subclass: | Hypothetical | ||||||||||
| Protein Sequence: | MSVPQYCAAN ALALSTYRHR VNGKTRSSAR PAAAKSTPSR SAAFVPVSTP RPEVAALVEI ALEGMTLRLN GEAAERVLAG VMARLA |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | istB | IstB | ISCsp4 | 271 | 16108-16923 | - |
|---|
| Class: | Accessory Gene | ||||||||||
| Subclass: | ATPase Transposition Helper | ||||||||||
| Comment: | ATPase | ||||||||||
| Protein Sequence: | MLELVTDFKA LGLHGMASAW PEVLGTARIK AMDHEAVLRQ LIKAEMAQRE VRSMAYQMRV ARFPSHRDLA GFDFAQAHVQ EAQVRELHTL RFTESAHNVV FVGGPGTGKT HLATSLGIEA IRVHGKRVRF FSTVELVNAL ELEKAQNKAG QLAHRLMYVD LVILDEMGYL PFTQSGGALL FHLLSKLYER TSVVITTNLN FSEWSTVFGD AKMTTALLDR LTHHCHIVES GNESWRFKHS SAAAGITKTA RAKAQKGADQ TTQPLDLSTT N |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | istA | IstA | ISCsp4 | 505 | 16916-18433 | - |
|---|
| Class: | Transposase | ||||||||||
| Transposase Chemistry: | DDE | ||||||||||
| Protein Sequence: | VINVSTLSKL RRLVLRDGVS VREASRRLGI SRNTASKWLS EPEMREPKYP VRVKAQGVLT PYEDTLARWL KADQHRNKRE RRGIKAMFEA LRAMGYGGSR GPVYSFAKQW RLAQDHSARG AGFVPLSFEL GEAFQFDWST EYAFIGGLRR RLEVAHTKLA ASRAFMLSAF HSQAHEMLFE AHARAFAVLG GVAKRGIYDN MKTAVDKVGA GKQRSVNARF EAMTGHYLFD PEFCNRAAGW EKGIVEKNVQ DRRRGIWREA SERRWASLSE LNAWLQQACV DAWSELRHPE WHELTVAEVW QDERLRLTPN PRPFDGYVED PVRVTSTSLI HFQRNRYSVP CEWVHAVVSL RAYHDRLLVV GPKGHSVTLQ RCFDRDQTIY DWTHYIALIE RKPGALRNGA PFKTMPEPLR LLQDQLLRHA GGDRVMAQVL SAVTAHGLEA VLVAVELALQ SGRVSAEHVL NVLSRLKEPE LRVEPATTSV DLKTPSQADL KRYDRLRQPK EVRHA |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | lysR family | LysR family | Tn5501.8 | 305 | 19085-20002 | - |
|---|
| Class: | Passenger Gene | ||||||||||
| Subclass: | Other | ||||||||||
| Comment: | lysR family transcriptional regulator | ||||||||||
| Protein Sequence: | MTLQQLRAFL AIVEFGSFRR AARELGLSQA GLTNSLQALE AGLGVSLLQR SAQGVALTAD GKRLFARAQL IDREARRAMD EAQQASGAAG GTLHVGLGPT PTAVLLHLVV PDFHARFPTV KLTLVSGLYE QLRPALLQGL IELAVTAVPD EGPGPGLKSK VLFKSDLVVV GRPGHPHAQA RSLRELADCE WILLGPPGGP GGTITRFHAD QGLPAPRVAA TCESFTQLAA LISGTDWLAL LPAVMVERGL LGTQVVQLRL KERAHRFDNC VVYRTEPPLT PAAAVFAAMC ESCARIVARV APPAT |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | bhbF2 | BhbF2 | Tn5501.8 | 393 | 20137-21318 | + |
|---|
| Class: | Passenger Gene | ||||||||||
| Subclass: | Other | ||||||||||
| Comment: | 4-hydroxybenzoate 3-monooxygenase | ||||||||||
| Protein Sequence: | MKTQVAIIGG GPAGMLLSEI LHRAGIHSVV LEQRSREYVL SRIRAGVLEQ GTVDVLRANG LGERMDREGH AHDGMKIVWA GRDSFFIDVN KHLGKRFMAY GQTNIQEDLF AAADRRNAAV LTEAEDVQPM DVTTDRPYVT FRYRGEAMRM DCDFIAGCDG FHGVSRKAIP ANVLREFEKV YPFGWLGILS KTPPLPDIVY ANHPRGFALA SMRNPTLSRY YIQVPLDTKI EDWSDDRFWS ELKMRYPREL ADAIVTGPSI EKSIAPLRSF VAEPMRHGRL FLAGDAAHIV PPTGAKGLNL AVSDVFYLSR ALAAFYGQGT TALLDNYSDM ALRRVWSSVR TSWYLTNLLH RFPGASDFDQ RAQEYELEYL KSSHHAQAAL AEQYAGLPFE EAA |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | bhbD2 | BhbD2 | Tn5501.8 | 139 | 21315-21734 | + |
|---|
| Class: | Passenger Gene | ||||||||||
| Subclass: | Other | ||||||||||
| Comment: | protocatechuate 4,5-dioxygenase alpha subunit | ||||||||||
| Protein Sequence: | MTMEATMNTP RDYHDIPGTY VFDGEHNRKG YQLNLLCKSL DVAANRDAFR AGPEAYLDRF PMTAEQRQAV LERDWLGMLR LGGNIYYTFK LAIFDGMTMQ HVGAAMSGTG MTVEQFRQMM LDGGRPIKGN RSKKERRNG |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | bhbE2 | BhbE2 | Tn5501.8 | 279 | 21727-22566 | + |
|---|
| Class: | Passenger Gene | ||||||||||
| Subclass: | Other | ||||||||||
| Comment: | Protocatechuate 4,5-dioxygenase | ||||||||||
| Protein Sequence: | MAKLVGGVGT SHVPAIGAAV DHGKTQEPYW KPVFDGMRAA KDWIAEARPD VCIIVYNDHA SRFALDLIPT FALGVGAEFH PHDEGYGPRP VPVVKGDPEF GWHLAESLIL EEFDITIVGD MTVDHGLTVP LSVMFGQPHE WPCKVIPLCV NVIQYPQPTG NRCFKLGQAI RRAIDSYDKD IKVAIFGTGG LSHQLQGERA GVINAGYDNQ WLDRFVAEPA EVAKIGHTEL LRETGSEGME CVMWLIMRGA LDERVKVVHR YYHVPVSNTA YGLLVLESA |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | parE | ParE | Tn5501.8 | 94 | 23443-23727 | - |
|---|
| Class: | Passenger Gene | ||||||||||
| Subclass: | Toxin | ||||||||||
| Sequence Family: | ParE_toxin (Pfam:PF05016) | ||||||||||
| Target: | DNA gyrase | ||||||||||
| Protein Sequence: | VRVVWTPEAQ QDRADVWDYI AADNPRAAAR MDEIFSDAAA RLIQHPMLGK PGKIPGTREL IPHESYRLVY QIDGETVWIL TLVHTARLWP PVRD |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | parD | ParD | Tn5501.8 | 92 | 23724-24002 | - |
|---|
| Class: | Passenger Gene | ||||||||||
| Subclass: | Antitoxin | ||||||||||
| Sequence Family: | parD (PDB:4Q2U) | ||||||||||
| Comment: | RelB/ParD/CcdA/DinJ | ||||||||||
| Protein Sequence: | MSKQAVFTMK LEPELRAEFM AEAEAAHRPA SQVLRELMRE FVQRQRESRE YDEFLRRKVE AGRASMRAGL GRSNDEVEAE FAARRASVAS QA |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | tnpR | TnpR | Tn5501.8 | 192 | 24256-24834 | + |
|---|
| Class: | Accessory Gene | ||||||||||
| Subclass: | Resolvase | ||||||||||
| Sequence Family: | Serine Site-Specific Recombinase | ||||||||||
| Transposase Chemistry: | Serine | ||||||||||
| Protein Sequence: | MRVSSDSDRQ STNLQRDALL AVGVDARHLF EDHASGAKDD RAGLARALEF VRPGDVLVVW KLDRLGRSLS HLLAIVTSLK KKQVAFRSLT ENLDTTTPSG EFLFQVFGAL AQYERALIQE RVVAGLAAAR KRGRIGGRPQ AITGEKLEAI VAALDGGMSK AAVCRNFGVK RTTLIETLAR VGWTGSRGAS SR |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | tnpA | TnpA | Tn5501.8 | 1009 | 24831-27860 | + |
|---|
| Class: | Transposase | ||||||||||
| Transposase Chemistry: | DDE | ||||||||||
| Protein Sequence: | MTTKSERLTV LSDAEQEALY GLPDFDDAQR LEYLALTETE LALASSRPGL HAQVYCILQI GYFKAKHAFF RFDWSEVEHD CAFVLSRYFH GESFEHKPIS KHEHYTQREW IADLFGYRPW AAEFLAQLAQ QAAQTVRRDV MPGFIAAELI VWLNEHKIIR PGYTTLQELV SEALSAERRR LAGLLSEVLD ESAKAALGRL LVRDDTLSQL AALKQDAKDF GWRQMARERE KRATLEPLHR IAKALLPKLG VSQQNLLYYA SLANFYTVHD LRNLKADQTY LYLLCYAWVR YRQLSDNLVD AMAYHMKQLE DESSAGAKQS FVAEQVRRQQ DTPQVGRLLS LYIDDSVPDP TPFGDVRQRA YKIMPRDTLQ TTAQRMSVKP VSKLALHWQA VDGLAERIRR HLRPLYVALD LAGTDPGSPW LVALAWAKDV FAKQQRLSQR PLAECPAATL PKRLRPYLLT FDADGKPTDL HADRYEFWLY RQVRKRFQSG ELYLDDSLQH RHFSDELVSL DEKAAVLAQI DIPFLRQPLD AQLDALATEL RAQWLAFNRE LKQGKLTHLE YDKDTQKLTW RKPKGENQKA REKAFYEQLP FCDVADVFRF VNGQCQFLSA LTPLQPRYAK KVADADSLMA VIIAQAMNHG NQVMARTSDI PYHVLESAYQ QYLRHATLHA ANDCISNAIA ALPIFPYYSF DLDALYGAVD GQKFGVERPT VKARHSRKYF GRGKGVVAYT LLCNHVPLNG YLIGAHDYEA HHVFDIWYRN TSDIVPTAIT GDMHSVNKAN FAILHWFGLR FEPRFTDLGD QLKELYSADD PALYDQCLIR PAGRIDRDLI VSEKPNLDQI VATLGLKEMT QGTLIRKLCT YTAPNPTRRA VFEFDKLIRS IYTLRYLRDP QLERNVHRSQ NRIESYHQLR STIAQVGGKK ELTGRTDIEI EISNQCARLI ANAVIFYNSA ILSRLLMKYE ASGNAKAHAL LTQISPAAWR HILLNGHYTF QSDGKMIDLD ALVAGLELG |
||||||||||
| TnCentral Accession | TE Name | Type | Coordinates | Strand | Length |
|---|---|---|---|---|---|
| ISCsp4-KC771559 | ISCsp4 | insertion sequence | 16037-18537 | + | 2501 |
| Name | Associated TE | Coordinates | Direction | Length | Sequence |
|---|---|---|---|---|---|
| IRR | ISCsp4 | 16037-16068 | + | 32 | TGTTGATTCA CCGTACAAAC TGAGCCAGTG TT |
| IRR | ISCsp4 | 16037-16068 | + | 32 | TGTTGATTCA CCGTACAAAC TGAGCCAGTG TT |
| IRL | ISCsp4 | 18506-18537 | - | 32 | TGTTGAATCA CAACGAAAAC TGGGCCATTT TT |
1. Chen K, Huang L, Xu C, Liu X, He J, Zinder SH, Li S, Jiang J.
Molecular characterization of the enzymes involved in the degradation of a brominated aromatic herbicide.. Mol Microbiol. 2013 Sep;89(6):1121-39. doi: 10.1111/mmi.12332. Epub 2013 Jul 31. PubMed ID:
23859214
.