Mobile element type:
Transposon
Name:
Tn5501.5
Synonyms:
Tn5501.13
Accession:
Tn5501.5-EF628291
Family:
Tn3
Group:
Tn3000
First isolate:
Yes
Partial:
ND
Evidence of transposition:
Yes
Host Organism:
Uncultured bacterium
Date of Isolation:
2007
Country:
Germany
Molecular Source:
plasmidpGNB1
Name | Coordinates | Direction | Length | Sequence |
---|---|---|---|---|
IRL | 1-38 | + | 38 | GGGGTTCTAA GCCGGAACCG CCGAAAATTC CGTCAGCC |
IRR | 6261-6298 | - | 38 | GGGGTTCTAA GCCAGAACCG CCGAAATTTC CGTCATCC |
Name | Associated TE | Coordinates | Orientation | Length | Sequence |
---|---|---|---|---|---|
res | Tn5501.5 | 2509-2639 | + | 131 | GCCTGTCGGA AAACATTTGT TTTTCGACAG GCCTTCAACG GTCCTCTGCA CCAACCTCCG AGTGGCCGCA AAATTGTGCG GAAAACTCTG TCGCCAGACG CTACCATACG GAAACCTCGT CTTAATGGTT T |
res_site_I | Tn5501.5 | 2509-2537 | + | 29 | GCCTGTCGGA AAACATTTGT TTTTCGACA |
res_site_II | Tn5501.5 | 2571-2614 | + | 44 | TGGCCGCAAA ATTGTGCGGA AAACTCTGTC GCCAGACGCT ACCA |
res_site_III | Tn5501.5 | 2615-2639 | + | 25 | TACGGAAACC TCGTCTTAAT GGTTT |
ORF Summary
Name | Associated TE | Coordinates | Orientation | Class | Subclass |
---|---|---|---|---|---|
cupin2 | Tn5501.5 | 438-920 | - | Passenger Gene | Other |
tnp | ISGNB1.1 | 1075-2022 | - | Transposase | |
parD | Tn5501.5 | 2130-2408 | - | Passenger Gene | Antitoxin |
tnpR | Tn5501.5 | 2662-3240 | + | Accessory Gene | Resolvase |
tnpA | Tn5501.5 | 3237-6266 | + | Transposase |
ORF Details
Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | cupin2 | Cupin2 | Tn5501.5 | 160 | 438-920 | - |
---|
Class: | Passenger Gene | ||||||||||
Subclass: | Other | ||||||||||
Protein Sequence: | MNTDPQQRRV APPFRAGYRQ RRTLGYSCSV ITSQAKLIFG VDMEMESRIF SVTEYIRPSD GEPIRSVVLE TKDSAVVVWH AHPGQEITAH VHPDGQDTWT VISGEAEYYQ GGGKVAHLKA GDIAIAKPGQ VHGALNTSPV PFVFVSVVAS GNAGFALAEK |
Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | tnp | Tnp | ISGNB1.1 | 315 | 1075-2022 | - |
---|
Class: | Transposase | ||||||||||
Transposase Chemistry: | DDE | ||||||||||
Protein Sequence: | MSESKSAKPR YKTTNWAAYN AALKARGSLA IWLDKDMQWY APASGKRGRQ HVFSDAAIQF CLSIKCLFGL ALRQSLGLVQ SLLHLADLDW RVPDFSTVSR RQKTLQVQLP YRASTSALNL LVDSTGIKFL GEGEWKRKKH GAEYRRQWRK VHLGIDASTL EIRAIEVTDN SVGDAPMLPG LLGQIPPGEP IASVSTDGAY DTKACHAAIM ERGAQAIIPP RKNAQVWKSQ TPGAMVRNEA VLACKRLGWR IWKKWSGYHR RSLVETKMHC FKRLGERVMA RTFERQVTEL HVRVALLNRF TQLGCPTTVA VPAVA |
Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | parD | ParD | Tn5501.5 | 92 | 2130-2408 | - |
---|
Class: | Passenger Gene | ||||||||||
Subclass: | Antitoxin | ||||||||||
Sequence Family: | parD (PDB:4Q2U) | ||||||||||
Comment: | RelB/ParD/CcdA/DinJ | ||||||||||
Protein Sequence: | MSKQAVFTMK LEPELRAEFM AEAEAAHRPA SQVLRELMRE FVQRQRESRE YDEFLRRKVE AGRASMRAGL GRSNDEVEAE FAARRASVAS QA |
Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | tnpR | TnpR | Tn5501.5 | 192 | 2662-3240 | + |
---|
Class: | Accessory Gene | ||||||||||
Subclass: | Resolvase | ||||||||||
Sequence Family: | Serine Site-Specific Recombinase | ||||||||||
Transposase Chemistry: | Serine | ||||||||||
Protein Sequence: | MRVSSDSDRQ STNLQRDALL AVGVDARHLF EDHASGAKDD RAGLARALEF VRPGDVLVVW KLDRLGRSLS HLLAIVTSLK KKQVAFRSLT ENLDTTTPSG EFLFQVFGAL AQYERALIQE RVVAGLAAAR KRGRIGGRPQ AITGEKLEAI VAALDGGMSK AAVCRNFGVK RTTLIETLAR VGWTGSRGAS SR |
Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | tnpA | TnpA | Tn5501.5 | 1009 | 3237-6266 | + |
---|
Class: | Transposase | ||||||||||
Transposase Chemistry: | DDE | ||||||||||
Protein Sequence: | MTTKSERLTV LSDAEQEALY GLPDFDDAQR LEYLALTETE LALASSRPGL HAQVYCILQI GYFKAKHAFF RFDWSEVEHD CAFVLSRYFH GESFEHKPIS KHEHYTQREW IADLFGYRPW AAEFLAQLAQ QAAQTVRRDV MPGFIAAELI VWLNEHKIIR PGYTTLQELV SEALSAERRR LAGLLSEVLD ESAKAALGRL LVRDDTLSQL AALKQDAKDF GWRQMARERE KRATLEPLHR IAKALLPKLG VSQQNLLYYA SLANFYTVHD LRNLKADQTY LYLLCYAWVR YRQLSDNLVD AMAYHMKQLE DESSAGAKQS FVAEQVRRQQ DTPQVGRLLS LYIDDSVPDP TPFGDVRQRA YKIMPRDTLQ TTAQRMSVKP VSKLALHWQA VDGLAERIRR HLRPLYVALD LAGTDPGSPW LVALAWAKDV FAKQQRLSQR PLAECPAATL PKRLRPYLLT FDADGKPTDL HADRYEFWLY RQVRKRFQSG ELYLDDSLQH RHFSDELVSL DEKAAVLAQI DIPFLRQPLD AQLDALATEL RAQWLAFNRE LKQGKLTHLE YDKDTQKLTW RKPKGENQKA REKAFYEQLP FCDVADVFRF VNGQCQFLSA LTPLQPRYAK KVADADSLMA VIIAQAMNHG NQVMARTSDI PYHVLESAYQ QYLRHATLHA ANDCISNAIA ALPIFPYYSF DLDALYGAVD GQKFGVERPT VKARHSRKYF GRGKGVVAYT LLCNHVPLNG YLIGAHDYEA HHVFDIWYRN TSDIVPTAIT GDMHSVNKAN FAILHWFGLR FEPRFTDLGD QLKELYSADD PALYDQCLIR PAGRIDRDLI VSEKPNLDQI VATLGLKEMT QGTLIRKLCT YTAPNPTRRA VFEFDKLIRS IYTLRYLRDP QLERNVHRSQ NRIESYHQLR STIAQVGGKK ELTGRTDIEI EISNQCARLI ANAVIFYNSA ILSRLLMKYE ASGNAKAHAL LTQISPAAWR HILLNGHYTF QSDGKMIDLD ALVAGLELG |
TnCentral Accession | TE Name | Type | Coordinates | Strand | Length |
---|---|---|---|---|---|
ISGNB1.1-EF628291 | ISGNB1.1 | insertion sequence | 1022-2068 | + | 1047 |
Name | Associated TE | Coordinates | Direction | Length | Sequence |
---|---|---|---|---|---|
IRR | ISGNB1.1 | 1022-1036 | + | 15 | GGCTTTGTTG CACAA |
IRL | ISGNB1.1 | 2054-2068 | - | 15 | GGCTCTGTTG CACAA |
1. Schluter A, Krahn I, Kollin F, Bonemann G, Stiens M, Szczepanowski R, Schneiker S, Puhler A.
IncP-1-beta plasmid pGNB1 isolated from a bacterial community from a wastewater treatment plant mediates decolorization of triphenylmethane dyes.. Appl Environ Microbiol. 2007 Oct;73(20):6345-50. doi: 10.1128/AEM.01177-07. Epub 2007 Aug 3. PubMed ID:
17675426
.