Mobile element type:
Transposon
Name:
Tn5501.1
Synonyms:
Accession:
Tn5501.1-CP016447.1
Family:
Tn3
Group:
Tn3000
First isolate:
Yes
Partial:
ND
Evidence of transposition:
ND
Host Organism:
Acidovorax sp. RAC01
Date of Isolation:
2016
Country:
Usa
Molecular Source:
chromosome
| Name | Coordinates | Direction | Length | Sequence |
|---|---|---|---|---|
| IRL | 1-38 | + | 38 | GGGGTTCTAA GCCGGAACCG CCGAAAATTC CGTCAGCC |
| IRR | 12252-12289 | - | 38 | GGGGTTCTAA GCCAGAACCG CCGAAATTTC CGTCATCC |
| Name | Associated TE | Coordinates | Orientation | Length | Sequence |
|---|---|---|---|---|---|
| res | Tn5501.1 | 8500-8630 | + | 131 | GCCTGTCGGA AAACATTTGT TTTTCGACAG GCCTTCAACG GTCCTCTGCA CCAACCTCCG AGTGGCCGCA AAATTGTGCG GAAAACTCTG TCGCCAGACG CTACCATACG GAAACCTCGT CTTAATGGTT T |
| res_site_I | Tn5501.1 | 8500-8528 | + | 29 | GCCTGTCGGA AAACATTTGT TTTTCGACA |
| res_site_II | Tn5501.1 | 8562-8605 | + | 44 | TGGCCGCAAA ATTGTGCGGA AAACTCTGTC GCCAGACGCT ACCA |
| res_site_III | Tn5501.1 | 8606-8630 | + | 25 | TACGGAAACC TCGTCTTAAT GGTTT |
ORF Summary
| Name | Associated TE | Coordinates | Orientation | Class | Subclass |
|---|---|---|---|---|---|
| ttt receptor | Tn5501.1 | 453-1238 | - | Passenger Gene | Other |
| tricarboxylate transport | Tn5501.1 | 1554-2528 | - | Passenger Gene | Other |
| 2-dehydropantoate 2-reductase | Tn5501.1 | 2583-3515 | - | Passenger Gene | Other |
| salicylaldehyde dehydrogenase | Tn5501.1 | 3519-4982 | - | Passenger Gene | Other |
| mdlC | Tn5501.1 | 5009-6610 | - | Passenger Gene | Other |
| lysR family | Tn5501.1 | 6711-7598 | + | Passenger Gene | Other |
| parE | Tn5501.1 | 7840-8124 | - | Passenger Gene | Toxin |
| parD | Tn5501.1 | 8121-8399 | - | Passenger Gene | Antitoxin |
| tnpR | Tn5501.1 | 8653-9231 | + | Accessory Gene | Resolvase |
| tnpA | Tn5501.1 | 9228-12257 | + | Transposase |
ORF Details
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | ttt receptor | Ttt receptor | Tn5501.1 | 261 | 453-1238 | - |
|---|
| Class: | Passenger Gene | ||||||||||
| Subclass: | Other | ||||||||||
| Protein Sequence: | VVVENRSGAG GNIGGEAVAR AAPDGYTLLM SSEGMVSVNP HIYPKMSFDP SKDLEPVAAV ARVLVFLVTS PGFPAKDAKE FLAQLKARPG KLSFGSPGNG SSPHLAAEMM KSQANVFATH VPYRGAAPAL TDLLAGQLDF LFDPGVAMPH IKAGKLKLLA VGSLKRSPLF PDVPTLDEVG LKGFDADTVF GLYAPAGTPA DFVNRLNREI NKALALPGPR ERIAALGGEP APMTPAQFHA KALEDGVRFG KLIRERKIVG D |
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| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | tricarboxylate transport | Tricarboxylate transport | Tn5501.1 | 324 | 1554-2528 | - |
|---|
| Class: | Passenger Gene | ||||||||||
| Subclass: | Other | ||||||||||
| Protein Sequence: | MTTRRSLLMA ATFVASSYLG AAHADNFPAK PVRWVVAYAA GGGSDALGRA VGSQLSTQLG QPVLIDNKPG GATVIGAENV AKSPGDGYTV FTADNGTLVF NTALFKKLSY DPQKDFTSIG MMARFPLLLA VNPNAGYSDV KALIAAAKAN PGKLSFATPG VGSPHHLAME MLKARNNVDL VHVAYRGAAP AIQDVVGGQL PLMVVDSAAG MQMMKAGKLK PLATFSKSRL ASMPDVPTLM ELGYTDTEAV AWQGLVVPSS TPKEIVAKLS TELQKAIQSD AVRTQFATMG IEPTPSDAAT MQKHWAQEGQ FWPRLIKERG ISLD |
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| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | 2-dehydropantoate 2-reductase | 2-dehydropantoate 2-reductase | Tn5501.1 | 310 | 2583-3515 | - |
|---|
| Class: | Passenger Gene | ||||||||||
| Subclass: | Other | ||||||||||
| Protein Sequence: | VDPMKITVVG AGAMGSLFGG LLAEQGHDVT LVDVNAAHLQ AIQSQGLRLH NDRGERNIRA LRACRPEQAE GQPDLVLVFT KTLHTASALA GVARLIGPQT YVLSLQNGLG NVEVIGQHVS AERILIGVTT WPADLVGPGH VHSHGQGVVR LMSADGQDRP FVATVAQALD EAGLACTADA AVWTAIWEKV AFNAALNSIC TATQCTVDQL GAIEDGRALA FAVVDEVLAV AQAQGIAVHA DACKARVADA IARHVGHKPS MLQDVLAGRP TEIEFINGAV VAAAVTFGVP VPCTRTLLQI VRLVQARQTG |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | salicylaldehyde dehydrogenase | Salicylaldehyde dehydrogenase | Tn5501.1 | 487 | 3519-4982 | - |
|---|
| Class: | Passenger Gene | ||||||||||
| Subclass: | Other | ||||||||||
| Protein Sequence: | VETHMQQIQL LINGEKCLAS HERFFERRNP LDGEVATRAP AASVADAVRA VEAAKRAFPA WSRMGPGARR GLLLKAAAAL EAKADAFTAA MAAETGSSAI WAGFNVHVAA GMLQEAASLT TQVGGEVIPS DVPGSLAMGV RQAAGVVLGM APWNAPVILG VRAVATPLAC GNTVVLKGSE LSPATHGLII EALQEAGLPP GVVNFVTNDP ADAGAVVEAM VAHPAVRRVN FTGSTHVGRI IAALCAQHLK PAVLELGGKA PLLVLEDADL DAAVNGAAFG AFANSGQICM STERIIVDTR VADAFVAKLA AKAQALPLGD PRKGPVVLGS VVDMRTVERC NALIDDALAK GATLVCGGKA DSTLMPATLL DHVTPTMRIY QEESFGPVKP IVRVEGVDAA VACANDNAFG LSAAVFSRDV ARAWNVAQRI ESGICHINAP TVHDEPQMPF GGVKESGYGH FGGRAGIDAF TELRWITVQT TERHYPF |
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| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | mdlC | MdlC | Tn5501.1 | 533 | 5009-6610 | - |
|---|
| Class: | Passenger Gene | ||||||||||
| Subclass: | Other | ||||||||||
| Comment: | Benzoylformate decarboxylase | ||||||||||
| Protein Sequence: | MSTSSNRPTV REAFLRLMQD LGIDTVFGNP GSTELPMFRD FPKDMRYVLG LQESVVVGMA DGYAQVTRNA AMVNLHSAAG VGHAMGNIFT AFRNQTPMLV TAGQQSRAIL PFDPFLSASQ ATELPRPYVK WAIEPARAED VPLALLRAYQ IAMQAPCGPV FISIPADDWD RPADWVPARR VSHATAPDPA MLAQLAQALD GSLRPAFVVG AGVDRDGAVD AVVALAERHQ AAVYTAPMSA RCGFPEQHPL FAGFLAAMRE RIVEALAGHD LVVVLGAPAF SYHVEGQGPH MPPGADLWQI VDDPQMAAWT PAGTGIVSSV HLAVAALLAA PAPAAARRAP DPRRPAARAE PSLPMSVAFA LQALDAARGP DDVVVEEAPG SRGVMQACLP MRGADSFYTM ASGGLGHGMP AAVGVALGRQ KLGLPGRVIA LIGDGSSLYA IQALFTAAKL QLPITFVILN NQRYAALQDF APVFGYALGD KPEGTDLQGL DFVALAQGHG LPGLRVEQPE GLRDALAGAL SHAGPLLIEL VVA |
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| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | lysR family | LysR family | Tn5501.1 | 295 | 6711-7598 | + |
|---|
| Class: | Passenger Gene | ||||||||||
| Subclass: | Other | ||||||||||
| Protein Sequence: | MEQLDLNLLR VFDVVYRTRN VSRAAELLGM SQPSTSQALT RLRLALGDPL FERIRGGVRP TPRAEDLARS VQSGLAQIEA GLASENAFDP ARSSAELRIH LTDIGEARFL PPLMGEMRRL APGIQLRARA WPQQEIGAAL DSGDIHLAIG FLPELTTSAH AKLLTDRYVV LLRADHPVAQ QARLTLRKMQ SLDWIAVRSH TQTLQMLRAA NLDCKVTLTT STFLALPDIV KNTDLAVLMP QQIAREFMPA NRLKLLDFDL PSNDFTVSVH WSRRHAHSPL VRWSREVLLR LFQRD |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | parE | ParE | Tn5501.1 | 94 | 7840-8124 | - |
|---|
| Class: | Passenger Gene | ||||||||||
| Subclass: | Toxin | ||||||||||
| Sequence Family: | ParE_toxin (Pfam:PF05016) | ||||||||||
| Target: | DNA gyrase | ||||||||||
| Protein Sequence: | VRVVWTPEAQ QDRADVWDYI AADNPRAAAR MDEIFSDAAA RLIQHPMLGK PGKIPGTREL IPHESYRLVY QIDGETVWIL TLVHTARLWP PVRD |
||||||||||
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | parD | ParD | Tn5501.1 | 92 | 8121-8399 | - |
|---|
| Class: | Passenger Gene | ||||||||||
| Subclass: | Antitoxin | ||||||||||
| Sequence Family: | parD (PDB:4Q2U) | ||||||||||
| Comment: | RelB/ParD/CcdA/DinJ | ||||||||||
| Protein Sequence: | MSKQAVFTMK LEPELRAEFM AEAEAAHRPA SQVLRELMRE FVQRQRESRE YDEFLRRKVE AGRASMRAGL GRSNDEVEAE FAARRASVAS QA |
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| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | tnpR | TnpR | Tn5501.1 | 192 | 8653-9231 | + |
|---|
| Class: | Accessory Gene | ||||||||||
| Subclass: | Resolvase | ||||||||||
| Sequence Family: | Serine Site-Specific Recombinase | ||||||||||
| Transposase Chemistry: | Serine | ||||||||||
| Protein Sequence: | MRVSSDSDRQ STNLQRDALL AVGVDARHLF EDHASGAKDD RAGLARALEF VRPGDVLVVW KLDRLGRSLS HLLAIVTSLK KKQVAFRSLT ENLDTTTPSG EFLFQVFGAL AQYERALIQE RVVAGLAAAR KRGRIGGRPQ AITGEKLEAI VAALDGGMSK AAVCRNFGVK RTTLIETLAR VGWTGSRGAS SR |
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| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | tnpA | TnpA | Tn5501.1 | 1009 | 9228-12257 | + |
|---|
| Class: | Transposase | ||||||||||
| Transposase Chemistry: | DDE | ||||||||||
| Protein Sequence: | MTTKSERLTV LSDAEQEALY GLPDFDDAQR LEYLALTETE LALASSRPGL HAQVYCILQI GYFKAKHAFF RFDWSEVEHD CAFVLSRYFH GESFEHKPIS KHEHYTQREW IADLFGYRPW AAEFLAQLAQ QAAQTVRRDV MPGFIAAELI VWLNEHKIIR PGYTTLQELV SEALSAERRR LAGLLSEVLD ESAKAALGRL LVRDDTLSQL AALKQDAKDF GWRQMARERE KRATLEPLHR IAKALLPKLG VSQQNLLYYA SLANFYTVHD LRNLKADQTY LYLLCYAWVR YRQLSDNLVD AMAYHMKQLE DESSAGAKQS FVAEQVRRQQ DTPQVGRLLS LYIDDSVPDP TPFGDVRQRA YKIMPRDTLQ TTAQRMSVKP VSKLALHWQA VDGLAERIRR HLRPLYVALD LAGTDPGSPW LVALAWAKDV FAKQQRLSQR PLAECPAATL PKRLRPYLLT FDADGKPTDL HADRYEFWLY RQVRKRFQSG ELYLDDSLQH RHFSDELVSL DEKAAVLAQI DIPFLRQPLD AQLDALATEL RAQWLAFNRE LKQGKLTHLE YDKDTQKLTW RKPKGENQKA REKAFYEQLP FCDVADVFRF VNGQCQFLSA LTPLQPRYAK KVADADSLMA VIIAQAMNHG NQVMARTSDI PYHVLESAYQ QYLRHATLHA ANDCISNAIA ALPIFPYYSF DLDALYGAVD GQKFGVERPT VKARHSRKYF GRGKGVVAYT LLCNHVPLNG YLIGAHDYEA HHVFDIWYRN TSDIVPTAIT GDMHSVNKAN FAILHWFGLR FEPRFTDLGD QLKELYSADD PALYDQCLIR PAGRIDRDLI VSEKPNLDQI VATLGLKEMT QGTLIRKLCT YTAPNPTRRA VFEFDKLIRS IYTLRYLRDP QLERNVHRSQ NRIESYHQLR STIAQVGGKK ELTGRTDIEI EISNQCARLI ANAVIFYNSA ILSRLLMKYE ASGNAKAHAL LTQISPAAWR HILLNGHYTF QSDGKMIDLD ALVAGLELG |
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