Mobile element type:
Transposon
Name:
Tn3000
Synonyms:
IS3000
Accession:
Tn3000-AF174129
Family:
Tn3
Group:
Tn3000
First isolate:
Yes
Partial:
ND
Evidence of transposition:
ND
Host Organism:
Escherichia coli
Date of Isolation:
1999
Country:
Molecular Source:
plasmid pMSP071
| Name | Coordinates | Direction | Length | Sequence |
|---|---|---|---|---|
| IRL | 1-50 | + | 50 | GGGGTTCTAG GGATTTTCCG TCCAAAAACG ACAAAGTGCT CTGGAGGCCC |
| IRR | 3186-3235 | - | 50 | GGGGTTCTAG GGATTTCCGT CCAAAAACGA CAAAGTGCTC TGGAGGCCGC |
ORF Summary
| Name | Associated TE | Coordinates | Orientation | Class | Subclass |
|---|---|---|---|---|---|
| tnpA | Tn3000 | 143-3160 | + | Transposase |
ORF Details
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | tnpA | TnpA | Tn3000 | 1005 | 143-3160 | + |
|---|
| Class: | Transposase | ||||||||||
| Function: | transposase | ||||||||||
| Transposase Chemistry: | DDE | ||||||||||
| Protein Sequence: | MAFEERVQIL SEAEQDELYG PPAFTSADQR FFFSLNDKEL AIAKSLRHRG QRYMLVVLLG YFKAKPVVLN PGFHQIKQDL KYVYQTVLPG PGCRPFNLTP KENERIYQRV FQLCNYQRWN VKDHGAALRD YLSQQARAWT APRHLFDAAI EYCSGQKIAI PAYSTLQKII SQVVGDEQEH MAAHLERAMS RGLKQALAEL VNGTGPLPFR QLRQSARNFT GTELEKELIV YRHIQHWMPE VDLLLSTLSL SQKNLQHLAE KVDYYGAKLK RQTVGSQWLY LLCYLQTRWQ QALERIADGF VHHVRQTKQK AKDYAQEAVF KDWQKAAKNV SKAAEVLHLF IDDSIDLQLP FATVRQQALS LLTKRDLESV CLFLNEQRRS VDEAMWQYCD EKESLRKGLL RELFLCLRFE GCDGTQHLAA ALAKTQNELN GQDAQLQTAD TRLLSKKSRE FLLDGEGNIL IDRYEWFLYQ QIPDRLNGQL TVPDITKYRA LDADLIDGEH WRKNKYTLLQ QSHFTKLAEE PEKLIKQMAM ELDTRLYEVG EYLEQEDNRN IILRNPQGKR FWRLPSASKH HLVNNPFFQQ IPTTGIADVL RMVDRDTGFI DCFAHVLGSQ SRSRSHEYDL LAILVGNATN QGIYGMAQIS DRTYDQLSTI QANYLRLETL NAANDNINNA TAKLPIFRYY NIQEDVIHAS ADGQKFEARR ETFKTRYSSK YFGTQKGVSA MTLIANHAAI NARVIGANEH ESHYIFDLLM SNTSDIIPDV LSTDTHGVNH VNFALLDLFG YQFAPRYAQV GKVINDMFDV KEDKEHRIQL CLKKPINTHR IAQHWDTIQR IAVSLKQRKT TQATLVRKLS EYKRNHPLLE ALTEYNRLVK ANYLLCYIDD ASLRNYVQRA LNRGEAYHQL RRPVSSVNGD QFRGSSDEEI QLWNECARLV TNAIVYFNSR ILSQLLTSFE YQGDTKRIDI VKQASPVAWH NINLKGTYHF ELSEKLPDLE ELMRSIEGYL PVSEK |
||||||||||
1. Sabate M, Tarrago R, Navarro F, Miro E, Verges C, Barbe J, Prats G.
Cloning and sequence of the gene encoding a novel cefotaxime-hydrolyzing beta-lactamase (CTX-M-9) from Escherichia coli in Spain.. Antimicrob Agents Chemother. 2000 Jul;44(7):1970-3. doi: 10.1128/AAC.44.7.1970-1973.2000. PubMed ID:
10858363
.
2. Sabate M, Navarro F, Miro E, Campoy S, Mirelis B, Barbe J, Prats G. Novel complex sul1-type integron in Escherichia coli carrying bla(CTX-M-9).. Antimicrob Agents Chemother. 2002 Aug;46(8):2656-61. doi: 10.1128/AAC.46.8.2656-2661.2002. PubMed ID: 12121950 .
2. Sabate M, Navarro F, Miro E, Campoy S, Mirelis B, Barbe J, Prats G. Novel complex sul1-type integron in Escherichia coli carrying bla(CTX-M-9).. Antimicrob Agents Chemother. 2002 Aug;46(8):2656-61. doi: 10.1128/AAC.46.8.2656-2661.2002. PubMed ID: 12121950 .