Mobile element type:
Transposon
Name:
Tn1071
Synonyms:
Accession:
Tn1071-M65135
Family:
Tn3
Group:
Tn1071
First isolate:
Yes
Partial:
ND
Evidence of transposition:
Yes
Host Organism:
Alcaligenes sp. BR60
Date of Isolation:
1991
Country:
Canada
| Name | Coordinates | Direction | Length | Sequence |
|---|---|---|---|---|
| IRL | 1-106 | + | 106 | GGGGTCTCCT CGTTTTCAGT GCAATAAGTG ACGGTACGCA AAGCTAGCAC TGGCGCGGGG GTGGTCTGGG TAGACCGTTG ATTTCATTGA CTTTCCTGTT CGCTTT |
| IRR | 3092-3201 | - | 110 | GGGGTCTCCT CGTTTTCAGT GCAATAAGTG ACGGTACGAA AAGCTAGCAC TGGCGCGGAG GTGGTGTTGG TAGATCGTTG ATTTCATTGA CTTTCCTGTT CACTTTCAAA |
ORF Summary
| Name | Associated TE | Coordinates | Orientation | Class | Subclass |
|---|---|---|---|---|---|
| tnpA | Tn1071 | 146-3058 | + | Transposase |
ORF Details
| Gene Name | Protein Name | Associated TE | Gene Length | Coordinates | Strand | tnpA | TnpA | Tn1071 | 970 | 146-3058 | + |
|---|
| Class: | Transposase | ||||||||||
| Function: | transposase | ||||||||||
| Transposase Chemistry: | DDE | ||||||||||
| Protein Sequence: | MQGWHTTFLG MRGLPRDISD FEMKAFFTFD GAERDAINAR RGDSHKLGLA LHIGFLRMSG RLLGAFRVIP VALWRHLGNE LGIAAPEVAS LRAMYERGRT LFDHQQVACT VLGFQWMSEH QRRSLVRELR DEVAGCDRDQ LLVRARQWLY KNKLVIVHER AIRTLIAAAL AQLEVETGTA IAASVDPATL DRWRASVSEL RPDGQTQQSW LWAAPAKHST RQISEVLERI DLLYTLDVHK HLADIPDLIL RRYARRLVSR PPSAGAKIKE PARTVEVACF LRYCLFTTTD QLILMVQRRI ADLWRQAAAD VPATVNWAAM YKTLLGELVA LSAQGAVPDA ELRARLEALI TETQKRKPPS RASLVREGLI DGIRPVRSLL VAIAKLPWQA TGEHPAIEYL AKLQALYLKG SRKLPVEVVA PSLGMIWQVS ISSPDRERAF QALEVATLFA LRRAVRNGSV WIEHSLSFRG RARLFFTDER WQAESKKHYA RLSLPSKAAT FLKPLLARVT AGVDAVAAAA RSGVLRVDDE LHLSPLPAED EDPEVTKLRA ALDHRIGEVQ LPEVILAVDA QVRFSWIMLG REPRSTDELL MVYAGIMAHG TSLTAVECAR MIPQLSATSI RQAMRWARDE RRLSQACQAV LEFMQRHPIA ATWGRSDLAS SDMMSMETTK RVWQARLDPR RNTPSIGIYS HVKDRWGIFH AQPFVLNERQ AGVAIEGVIR QEKLETSQLA VDTHGYTDFA MSHARLLGFD LCPRLKELKQ RHLFVPRGTK VPAEIAAVCE ANVDVALIEK HWDSLVHLAA SVMSGHASAV AALARFGSAA QGDPIYEAGV QLGRLLRTAF LADYFVKDAF RNELRRVLNR GEAVNALKRA IYTGRISPAQ AKRVDEMQAV ADALSLMANI VMAWNTSQMQ AVLDRWSNRR QVIPPELIGK IAPTRLESIN LRGVFRFPVD RYADQILPSR PNASITGTNG |
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1. Nakatsu C, Ng J, Singh R, Straus N, Wyndham C.
Chlorobenzoate catabolic transposon Tn5271 is a composite class I element with flanking class II insertion sequences.. Proc Natl Acad Sci U S A. 1991 Oct 1;88(19):8312-6. doi: 10.1073/pnas.88.19.8312. PubMed ID:
1656436
.
2. Nakatsu CH, Straus NA, Wyndham RC. The nucleotide sequence of the Tn5271 3-chlorobenzoate 3,4-dioxygenase genes (cbaAB) unites the class IA oxygenases in a single lineage.. Microbiology (Reading). 1995 Feb;141 ( Pt 2):485-95. doi: 10.1099/13500872-141-2-485. PubMed ID: 7704279 .
2. Nakatsu CH, Straus NA, Wyndham RC. The nucleotide sequence of the Tn5271 3-chlorobenzoate 3,4-dioxygenase genes (cbaAB) unites the class IA oxygenases in a single lineage.. Microbiology (Reading). 1995 Feb;141 ( Pt 2):485-95. doi: 10.1099/13500872-141-2-485. PubMed ID: 7704279 .