ISXo16

  • Family IS1595
  • Group IS1595
MGE type ISRelated element(s) :
Isoform Synonym(s) ISXoo10
Accession numberTranspositionOriginHost
AE013598 ND Xanthomonas oryzae
Xanthomonas oryzae pv. oryzae KACC10331
DNA section
IS Length : 1072 bp

Ends


IR Length : 21/23

IRL : CCTGATTAGCCCCGACCTTCAGCCAGCAGTCGCAGGATCTGCGCCAGGCG
IRR : CCTGATTAGCCCTGACCCTCAGCCATGGAAATTGCTGGCAGCACGCAGGA

Insertion site


Left flankDirect repeatRight flankDR Length
AGTTTGTTCAAGCTGGTATGCGTGGGCG8

DNA sequence

CCTGATTAGCCCCGACCTTCAGCCAGCAGTCGCAGGATCTGCGCCAGGCGGGGTTGATGGTGCCGTCACCTGACGTCAACGAGGTGGCGAGATGAGCATC
AACACTTTGCAGTTCCAGGCTGGATTGTCGATGCCTGAGTTCTTTGTGTCCTACGGCACCGATGCCAAGTGCTACCGCGCTCTGTACAGATGGCGGTGGC
CCCAGGGATTTCGCTGTCCGTGCTGCGCGGGACGAGCGCGCTCGCGCTTCAAGCGCGGTGGCGTCATCTACTACCCGTGCAGCACGTGCCGGCACCAGAC
CAGCCGGATCGCAGGCACGATGTTCCAGGGCACCCAGCTGCCACTGCGCACCTGGATGCTGGCGCTGCACCTGTTGGCCTCGACCACGACCAACATGGCT
GCGCTGGAGCTGATGCGTCACCTGGGCGTCAACTACAGGACCGCCTGGCGGATGAAGCACAAGATCATGCAGGTCATGGCCGAGCGCGATGCCACGCGTC
GACTGTCCGGGTTCGTGCAGATCGACGATGCCTACCTGGGCGGGGAGCGCAACGGCGGCAAGGCTGGGCGCGGATCGCAGAACAAGCAACCGTTCCTGAT
TGCGGTGCAGACCGATGCCAGCCTCACGGCGCCGAGCTTTGTGGTGATCGAGCCGGTGCGCAGCTTCGACAATGCCGCGCTCACGGACTGGATCGCCCGT
CGCCTGAGGCCAGAATGCGATGCCTACACCGACGGGTTGGCCTGTTTCGGCCGCCTGGAAGACGCCGGCCATGCACACACCACACTGGACACGGGCGGCG
GACGCGCAGCCACAGAGGCCGCCGGCGCCCGCTGGGTCAACGTGGTGCTTGGCAATCTCACGCGCGCCATCAGCGGCGTCTATCACGCCATCGCGCAAGG
CAAATATGCACGACGGTATCTGGCCGAGGCCGCCTACCGCTTCAACCGCCGCTTCCGCCTGTGCGAGATGCTGCCACGATTGGCCACGGCGATGATGCGT
TGCAAGCCCTGCCCGGAGCCGGTCCTGCGTGCTGCCAGCAATTTCCATGGCTGAGGGTCAGGGCTAATCAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
963 bp320 aa921054+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSINTLQFQAGLSMPEFFVSYGTDAKCYRALYRWRWPQGFRCPCCAGRARSRFKRGGVIYYPCSTCRHQTSRIAGTMFQGTQLPLRTWMLALHLLASTTT
NMAALELMRHLGVNYRTAWRMKHKIMQVMAERDATRRLSGFVQIDDAYLGGERNGGKAGRGSQNKQPFLIAVQTDASLTAPSFVVIEPVRSFDNAALTDW
IARRLRPECDAYTDGLACFGRLEDAGHAHTTLDTGGGRAATEAAGARWVNVVLGNLTRAISGVYHAIAQGKYARRYLAEAAYRFNRRFRLCEMLPRLATA
MMRCKPCPEPVLRAASNFHG

 

Blast result :
Comments
ISXo16 is 91% aa similar to IS1595.
References
1] Lee,B.M., Park,Y.J., Park,D.S., Kang,H.W., Kim,J.G., Song,E.S., Park,I.C., Yoon,U.H., Hahn,J.H., Koo,B.S., Lee,G.B., Kim,H., Park,H.S., Yoon,K.O., Kim,J.H., Jung,C.H., Koh,N.H., Seo,J.S. and Go,S.J. (2005) Nucleic Acids Res. 33 (2), 577-586