ISXo16
- Family IS1595
- Group IS1595
Isoform Synonym(s) ISXoo10
Accession number | Transposition | Origin | Host |
---|---|---|---|
AE013598 | ND | Xanthomonas oryzae | Xanthomonas oryzae pv. oryzae KACC10331 |
DNA section
IS Length : 1072 bp
Ends
IR Length : 21/23
IRL : CCTGATTAGCCCCGACCTTCAGCCAGCAGTCGCAGGATCTGCGCCAGGCG
IRR : CCTGATTAGCCCTGACCCTCAGCCATGGAAATTGCTGGCAGCACGCAGGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AGTTTGTTCA | AGCTGGTA | TGCGTGGGCG | 8 |
DNA sequence
CCTGATTAGCCCCGACCTTCAGCCAGCAGTCGCAGGATCTGCGCCAGGCGGGGTTGATGGTGCCGTCACCTGACGTCAACGAGGTGGCGAGATGAGCATC
AACACTTTGCAGTTCCAGGCTGGATTGTCGATGCCTGAGTTCTTTGTGTCCTACGGCACCGATGCCAAGTGCTACCGCGCTCTGTACAGATGGCGGTGGC
CCCAGGGATTTCGCTGTCCGTGCTGCGCGGGACGAGCGCGCTCGCGCTTCAAGCGCGGTGGCGTCATCTACTACCCGTGCAGCACGTGCCGGCACCAGAC
CAGCCGGATCGCAGGCACGATGTTCCAGGGCACCCAGCTGCCACTGCGCACCTGGATGCTGGCGCTGCACCTGTTGGCCTCGACCACGACCAACATGGCT
GCGCTGGAGCTGATGCGTCACCTGGGCGTCAACTACAGGACCGCCTGGCGGATGAAGCACAAGATCATGCAGGTCATGGCCGAGCGCGATGCCACGCGTC
GACTGTCCGGGTTCGTGCAGATCGACGATGCCTACCTGGGCGGGGAGCGCAACGGCGGCAAGGCTGGGCGCGGATCGCAGAACAAGCAACCGTTCCTGAT
TGCGGTGCAGACCGATGCCAGCCTCACGGCGCCGAGCTTTGTGGTGATCGAGCCGGTGCGCAGCTTCGACAATGCCGCGCTCACGGACTGGATCGCCCGT
CGCCTGAGGCCAGAATGCGATGCCTACACCGACGGGTTGGCCTGTTTCGGCCGCCTGGAAGACGCCGGCCATGCACACACCACACTGGACACGGGCGGCG
GACGCGCAGCCACAGAGGCCGCCGGCGCCCGCTGGGTCAACGTGGTGCTTGGCAATCTCACGCGCGCCATCAGCGGCGTCTATCACGCCATCGCGCAAGG
CAAATATGCACGACGGTATCTGGCCGAGGCCGCCTACCGCTTCAACCGCCGCTTCCGCCTGTGCGAGATGCTGCCACGATTGGCCACGGCGATGATGCGT
TGCAAGCCCTGCCCGGAGCCGGTCCTGCGTGCTGCCAGCAATTTCCATGGCTGAGGGTCAGGGCTAATCAGG
AACACTTTGCAGTTCCAGGCTGGATTGTCGATGCCTGAGTTCTTTGTGTCCTACGGCACCGATGCCAAGTGCTACCGCGCTCTGTACAGATGGCGGTGGC
CCCAGGGATTTCGCTGTCCGTGCTGCGCGGGACGAGCGCGCTCGCGCTTCAAGCGCGGTGGCGTCATCTACTACCCGTGCAGCACGTGCCGGCACCAGAC
CAGCCGGATCGCAGGCACGATGTTCCAGGGCACCCAGCTGCCACTGCGCACCTGGATGCTGGCGCTGCACCTGTTGGCCTCGACCACGACCAACATGGCT
GCGCTGGAGCTGATGCGTCACCTGGGCGTCAACTACAGGACCGCCTGGCGGATGAAGCACAAGATCATGCAGGTCATGGCCGAGCGCGATGCCACGCGTC
GACTGTCCGGGTTCGTGCAGATCGACGATGCCTACCTGGGCGGGGAGCGCAACGGCGGCAAGGCTGGGCGCGGATCGCAGAACAAGCAACCGTTCCTGAT
TGCGGTGCAGACCGATGCCAGCCTCACGGCGCCGAGCTTTGTGGTGATCGAGCCGGTGCGCAGCTTCGACAATGCCGCGCTCACGGACTGGATCGCCCGT
CGCCTGAGGCCAGAATGCGATGCCTACACCGACGGGTTGGCCTGTTTCGGCCGCCTGGAAGACGCCGGCCATGCACACACCACACTGGACACGGGCGGCG
GACGCGCAGCCACAGAGGCCGCCGGCGCCCGCTGGGTCAACGTGGTGCTTGGCAATCTCACGCGCGCCATCAGCGGCGTCTATCACGCCATCGCGCAAGG
CAAATATGCACGACGGTATCTGGCCGAGGCCGCCTACCGCTTCAACCGCCGCTTCCGCCTGTGCGAGATGCTGCCACGATTGGCCACGGCGATGATGCGT
TGCAAGCCCTGCCCGGAGCCGGTCCTGCGTGCTGCCAGCAATTTCCATGGCTGAGGGTCAGGGCTAATCAGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
963 bp | 320 aa | 92 | 1054 | + | No |
Chemistry : DDE
ORF sequence :
MSINTLQFQAGLSMPEFFVSYGTDAKCYRALYRWRWPQGFRCPCCAGRARSRFKRGGVIYYPCSTCRHQTSRIAGTMFQGTQLPLRTWMLALHLLASTTT
NMAALELMRHLGVNYRTAWRMKHKIMQVMAERDATRRLSGFVQIDDAYLGGERNGGKAGRGSQNKQPFLIAVQTDASLTAPSFVVIEPVRSFDNAALTDW
IARRLRPECDAYTDGLACFGRLEDAGHAHTTLDTGGGRAATEAAGARWVNVVLGNLTRAISGVYHAIAQGKYARRYLAEAAYRFNRRFRLCEMLPRLATA
MMRCKPCPEPVLRAASNFHG
NMAALELMRHLGVNYRTAWRMKHKIMQVMAERDATRRLSGFVQIDDAYLGGERNGGKAGRGSQNKQPFLIAVQTDASLTAPSFVVIEPVRSFDNAALTDW
IARRLRPECDAYTDGLACFGRLEDAGHAHTTLDTGGGRAATEAAGARWVNVVLGNLTRAISGVYHAIAQGKYARRYLAEAAYRFNRRFRLCEMLPRLATA
MMRCKPCPEPVLRAASNFHG
Blast result :
Comments
ISXo16 is 91% aa similar to IS1595.
References
1] Lee,B.M., Park,Y.J., Park,D.S., Kang,H.W., Kim,J.G., Song,E.S., Park,I.C., Yoon,U.H., Hahn,J.H., Koo,B.S., Lee,G.B., Kim,H., Park,H.S., Yoon,K.O., Kim,J.H., Jung,C.H., Koh,N.H., Seo,J.S. and Go,S.J. (2005) Nucleic Acids Res. 33 (2), 577-586