ISSysp7
- Family ISKra4
- Group ISAzba1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_010474 | ND | Synechococcus sp. | Synechococcus sp. PCC 7002 plasmid pAQ6 Synechococcus sp. PCC 7002 plasmid pAQ7 |
DNA section
IS Length : 2833 bp
Ends
IR Length : 23
IRL : GAGAGTGATTAAAAACGGGGGAAAGTATACTCAGAGTGGATCACAGGGAT
IRR : GAGAGTGATTAAAAACGGGGGAATCAAGCAGCATTAGGCACTCCAGTCTC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ACTCCCAGAG | AACCAAGACC | 0 | |
CCTTTATTAT | CTCCATAATT | 0 |
DNA sequence
GAGAGTGATTAAAAACGGGGGAAAGTATACTCAGAGTGGATCACAGGGATCTAAATTCTCATCAACTTTTTACCGTTTCCGCTTCCTTCAAATAGCGATA
GATAGTTGCCTTAGAAAGGCCGTAATCTTCCATCAACGTTTTGATTAATACCCCTTGTGAGCGTCTTTTACGTAGTTCTTGGCATTGACTTGGCGTGAGC
TGCTTTTTACGGCCAAACTGAACCCCACGAGCTTTCGCATTTTGGATGCCATCCATTTGACGTTCCGCACGTATTTCCGTCTCAAATTGGGAGATCGCCC
CCAACATATTGAATAAAAGCCGTCCGGTCGCATCTCCAGTATCAATACTCTGTTCAAGCACTTGAAGATTCACCTGCTTAGATTCCAATTGTTTCGCAAT
TTCGCACAGGTGCAGGGTTGAGCGAGCCAGGCGATCTAAACGAGTCACAACTAATGTGTCGCCTTCTCTGACATATTCAAGACAGGCTTTAAGCCTAGGG
CGTTTGTACGAGACACCACTGCACTTTTCTTTGAAAATCTTGTCGCAATGCTTGAGCTTCTCGATTTGAACTTCCAGACTCTGCCCAACAGAACTGACTC
GCGCGTAGCCAACCATCGCCATGATGACTCACCGTAATGTTTTATAACGTCTTAGACACGATGATAAAGCCATAATGAGACATTAAATAAAACACTGTTT
TGCACATTCTTGCAAAGTACACTTTATAAGACTATTGAGTCTATTCGTTGATGTAGTGGTATGGATAGTGGCTCAGGCTCACATGCATTTCAGATCAAAG
CTGTTATTGCCGGTGTCAGCCCAATGATCTGGCGTCGGTTCCTAGTGAGAGGCGACACAACGATTGCTCAACTACATTTTATTCTACAGATCGCTTTTGG
CTGGAGCGACACATATTTACATCGCTTCGTCATCCACGGCAACTCCTACGGCATCCATCATATTGGTGGGGAATGCTTCAGCGATGATCCCCATTCTGTA
ACTCTCTTAAGTCTGGGTTTGCGGGTGCGAGAACGGTTTCGCTACGAGTACAACTATTACGATAACTGGCAGGTACAACTGCGAGTTGAAAAGATAACTG
AACTTGAGCCCGAAAAAACTTACCCGATTTGTATTGAAGGTAAACGGAATGGCCCCATTGAAGATTGTGGAGGGGCTTGGGCTTTCCAGGAACTTAGACA
GGGATTCTCTACAGGAATGGTACTCCACCGCATGGCTGAAATTCTTTTCCAAGGAGATGATGAGCTTAAGCCACATCTGAGTGAACTTCGGCAACTGAGT
TATTGGCTGTTACTAGACAACCTTGAGTTACCAAAACTCAATCATCGCTTACAGCAAAATCCCTTGAGTGACGACCCAGCTTTTCGAGAGGACATTATTT
TCTAGGCTTATGAATATCAAAATCAGCTTAAGGATTGAAGCCGATGATGGCAGCATAAAAATCATTGAGGATGTCGCTCAATTGGAGCGAGGCCCATTGA
CTCCTACTAATCTAGGCTTGACTTTGGCCGAATCAAAACAGATTTTGCAAGGGATCCAACAAGAAATGGTTTCGTCACAGGTCAGTCAATATGTAGAGCA
ACAGGCGTTTTGTCCAGACTGTGGTCAACCGCGTAAATGTAAAGGGAAACATAAGCTAATTTATCGTTCTGTATTTGGGAAGCTGACATTAACTAGTCCT
CGATTCTTTCATTGTCCCTGCCAGTCCCAAGCAACAAAAAGCTTTAGCCCATTAGCCTTACTCCTCACTGAACGGCAGTCTCCTGAATACCTTTACCTGC
AGACAAAATTTGCCTCCCTGGTTTCCTATGGTCTGAGTGTCCAGTTACTTGATGAGGTGTTGCCATTGAACGGCACCCTTAATCCTTCAACCGTGAGATA
TCACCTGCATCAAATGGGGCAAAAGCTCGATGATGAATTGGGAGAAGAACAAATTATGTATGTAGAAGGTAGCCCTCGCCAATGGGAGCAACTCCCTCGA
CCTGAGCTTCCCCTCAATGTAGGAATTGATGGTGCCTATATCCATGCTCACTGTTCTAAAGGGAGTAAACAACAGCGCCATTTTGAACTGATTGTGGGCA
AGAGTATTCCAGATGAAGGACCCAGCAAAAGCTTTGGTTTTGTCCAGACCTATGACACCAAACCAAAGCGACGGTTATTTGAACTCCTAAAATCCCAAGG
AATGCAAATGAATCAGCAGGTTACCTTCTTTTCTGATGGAGGCGATACAGTCCGAGACTTGCAGCGATTTCTCAATCCTCAAGCGGAATATCTTCTGGAC
TGGTTTCATGTCACCATGCGGATCACTCAGCTCAGTCAATATCTCAGGGGGTTGAAGCACTATGATTTAGACAATGGAAAGTCTATGGTAGAGAGGCTAA
AGAGTGTCAAATGGTATCTCTGGCATGGGAATGTCTTCAGGGCATTACAAGAGCTGGAATGGCTGGAGGAGGATGCTGACTTTCTCGAAAGTAATTATCC
GAAACTCAAAAAAATGCGGCGGGCTATTGCTGAGTTCCACACGTATATTCAGAACAATGGCCATTTTATTCCCAACTATGGAGAACGTTACCGCTGTGGG
GAGCGCATCTCAACGGGATTTGTGGAATCTACAGTCAATCAAGTCGTGGCTAAACGAATGGAGAAGAAGCAGCAAATGCGATGGACTCCGAAGGGTGCTC
ATCTATTACTACAGGTGAGAACTAAAGTCCTAAATCAAGACTGGAAAGAAGTGGTTGACCGATGGTATTCTCCGCCACTGAAGGAGACTGGAGTGCCTAA
TGCTGCTTGATTCCCCCGTTTTTAATCACTCTC
GATAGTTGCCTTAGAAAGGCCGTAATCTTCCATCAACGTTTTGATTAATACCCCTTGTGAGCGTCTTTTACGTAGTTCTTGGCATTGACTTGGCGTGAGC
TGCTTTTTACGGCCAAACTGAACCCCACGAGCTTTCGCATTTTGGATGCCATCCATTTGACGTTCCGCACGTATTTCCGTCTCAAATTGGGAGATCGCCC
CCAACATATTGAATAAAAGCCGTCCGGTCGCATCTCCAGTATCAATACTCTGTTCAAGCACTTGAAGATTCACCTGCTTAGATTCCAATTGTTTCGCAAT
TTCGCACAGGTGCAGGGTTGAGCGAGCCAGGCGATCTAAACGAGTCACAACTAATGTGTCGCCTTCTCTGACATATTCAAGACAGGCTTTAAGCCTAGGG
CGTTTGTACGAGACACCACTGCACTTTTCTTTGAAAATCTTGTCGCAATGCTTGAGCTTCTCGATTTGAACTTCCAGACTCTGCCCAACAGAACTGACTC
GCGCGTAGCCAACCATCGCCATGATGACTCACCGTAATGTTTTATAACGTCTTAGACACGATGATAAAGCCATAATGAGACATTAAATAAAACACTGTTT
TGCACATTCTTGCAAAGTACACTTTATAAGACTATTGAGTCTATTCGTTGATGTAGTGGTATGGATAGTGGCTCAGGCTCACATGCATTTCAGATCAAAG
CTGTTATTGCCGGTGTCAGCCCAATGATCTGGCGTCGGTTCCTAGTGAGAGGCGACACAACGATTGCTCAACTACATTTTATTCTACAGATCGCTTTTGG
CTGGAGCGACACATATTTACATCGCTTCGTCATCCACGGCAACTCCTACGGCATCCATCATATTGGTGGGGAATGCTTCAGCGATGATCCCCATTCTGTA
ACTCTCTTAAGTCTGGGTTTGCGGGTGCGAGAACGGTTTCGCTACGAGTACAACTATTACGATAACTGGCAGGTACAACTGCGAGTTGAAAAGATAACTG
AACTTGAGCCCGAAAAAACTTACCCGATTTGTATTGAAGGTAAACGGAATGGCCCCATTGAAGATTGTGGAGGGGCTTGGGCTTTCCAGGAACTTAGACA
GGGATTCTCTACAGGAATGGTACTCCACCGCATGGCTGAAATTCTTTTCCAAGGAGATGATGAGCTTAAGCCACATCTGAGTGAACTTCGGCAACTGAGT
TATTGGCTGTTACTAGACAACCTTGAGTTACCAAAACTCAATCATCGCTTACAGCAAAATCCCTTGAGTGACGACCCAGCTTTTCGAGAGGACATTATTT
TCTAGGCTTATGAATATCAAAATCAGCTTAAGGATTGAAGCCGATGATGGCAGCATAAAAATCATTGAGGATGTCGCTCAATTGGAGCGAGGCCCATTGA
CTCCTACTAATCTAGGCTTGACTTTGGCCGAATCAAAACAGATTTTGCAAGGGATCCAACAAGAAATGGTTTCGTCACAGGTCAGTCAATATGTAGAGCA
ACAGGCGTTTTGTCCAGACTGTGGTCAACCGCGTAAATGTAAAGGGAAACATAAGCTAATTTATCGTTCTGTATTTGGGAAGCTGACATTAACTAGTCCT
CGATTCTTTCATTGTCCCTGCCAGTCCCAAGCAACAAAAAGCTTTAGCCCATTAGCCTTACTCCTCACTGAACGGCAGTCTCCTGAATACCTTTACCTGC
AGACAAAATTTGCCTCCCTGGTTTCCTATGGTCTGAGTGTCCAGTTACTTGATGAGGTGTTGCCATTGAACGGCACCCTTAATCCTTCAACCGTGAGATA
TCACCTGCATCAAATGGGGCAAAAGCTCGATGATGAATTGGGAGAAGAACAAATTATGTATGTAGAAGGTAGCCCTCGCCAATGGGAGCAACTCCCTCGA
CCTGAGCTTCCCCTCAATGTAGGAATTGATGGTGCCTATATCCATGCTCACTGTTCTAAAGGGAGTAAACAACAGCGCCATTTTGAACTGATTGTGGGCA
AGAGTATTCCAGATGAAGGACCCAGCAAAAGCTTTGGTTTTGTCCAGACCTATGACACCAAACCAAAGCGACGGTTATTTGAACTCCTAAAATCCCAAGG
AATGCAAATGAATCAGCAGGTTACCTTCTTTTCTGATGGAGGCGATACAGTCCGAGACTTGCAGCGATTTCTCAATCCTCAAGCGGAATATCTTCTGGAC
TGGTTTCATGTCACCATGCGGATCACTCAGCTCAGTCAATATCTCAGGGGGTTGAAGCACTATGATTTAGACAATGGAAAGTCTATGGTAGAGAGGCTAA
AGAGTGTCAAATGGTATCTCTGGCATGGGAATGTCTTCAGGGCATTACAAGAGCTGGAATGGCTGGAGGAGGATGCTGACTTTCTCGAAAGTAATTATCC
GAAACTCAAAAAAATGCGGCGGGCTATTGCTGAGTTCCACACGTATATTCAGAACAATGGCCATTTTATTCCCAACTATGGAGAACGTTACCGCTGTGGG
GAGCGCATCTCAACGGGATTTGTGGAATCTACAGTCAATCAAGTCGTGGCTAAACGAATGGAGAAGAAGCAGCAAATGCGATGGACTCCGAAGGGTGCTC
ATCTATTACTACAGGTGAGAACTAAAGTCCTAAATCAAGACTGGAAAGAAGTGGTTGACCGATGGTATTCTCCGCCACTGAAGGAGACTGGAGTGCCTAA
TGCTGCTTGATTCCCCCGTTTTTAATCACTCTC
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
561 bp | 186 aa | 622 | 62 | - | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MAMVGYARVSSVGQSLEVQIEKLKHCDKIFKEKCSGVSYKRPRLKACLEYVREGDTLVVTRLDRLARSTLHLCEIAKQLESKQVNLQVLEQSIDTGDATG
RLLFNMLGAISQFETEIRAERQMDGIQNAKARGVQFGRKKQLTPSQCQELRKRRSQGVLIKTLMEDYGLSKATIYRYLKEAETVKS
RLLFNMLGAISQFETEIRAERQMDGIQNAKARGVQFGRKKQLTPSQCQELRKRRSQGVLIKTLMEDYGLSKATIYRYLKEAETVKS
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
645 bp | 214 aa | 761 | 1405 | + | No |
Annotation : plasmid pRiA4b ORF-3 family proteinDescription :
ORF sequence :
MDSGSGSHAFQIKAVIAGVSPMIWRRFLVRGDTTIAQLHFILQIAFGWSDTYLHRFVIHGNSYGIHHIGGECFSDDPHSVTLLSLGLRVRERFRYEYNYY
DNWQVQLRVEKITELEPEKTYPICIEGKRNGPIEDCGGAWAFQELRQGFSTGMVLHRMAEILFQGDDELKPHLSELRQLSYWLLLDNLELPKLNHRLQQN
PLSDDPAFREDIIF
DNWQVQLRVEKITELEPEKTYPICIEGKRNGPIEDCGGAWAFQELRQGFSTGMVLHRMAEILFQGDDELKPHLSELRQLSYWLLLDNLELPKLNHRLQQN
PLSDDPAFREDIIF
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1401 bp | 466 aa | 1410 | 2810 | + | No |
Chemistry : DDE
ORF sequence :
MNIKISLRIEADDGSIKIIEDVAQLERGPLTPTNLGLTLAESKQILQGIQQEMVSSQVSQYVEQQAFCPDCGQPRKCKGKHKLIYRSVFGKLTLTSPRFF
HCPCQSQATKSFSPLALLLTERQSPEYLYLQTKFASLVSYGLSVQLLDEVLPLNGTLNPSTVRYHLHQMGQKLDDELGEEQIMYVEGSPRQWEQLPRPEL
PLNVGIDGAYIHAHCSKGSKQQRHFELIVGKSIPDEGPSKSFGFVQTYDTKPKRRLFELLKSQGMQMNQQVTFFSDGGDTVRDLQRFLNPQAEYLLDWFH
VTMRITQLSQYLRGLKHYDLDNGKSMVERLKSVKWYLWHGNVFRALQELEWLEEDADFLESNYPKLKKMRRAIAEFHTYIQNNGHFIPNYGERYRCGERI
STGFVESTVNQVVAKRMEKKQQMRWTPKGAHLLLQVRTKVLNQDWKEVVDRWYSPPLKETGVPNAA
HCPCQSQATKSFSPLALLLTERQSPEYLYLQTKFASLVSYGLSVQLLDEVLPLNGTLNPSTVRYHLHQMGQKLDDELGEEQIMYVEGSPRQWEQLPRPEL
PLNVGIDGAYIHAHCSKGSKQQRHFELIVGKSIPDEGPSKSFGFVQTYDTKPKRRLFELLKSQGMQMNQQVTFFSDGGDTVRDLQRFLNPQAEYLLDWFH
VTMRITQLSQYLRGLKHYDLDNGKSMVERLKSVKWYLWHGNVFRALQELEWLEEDADFLESNYPKLKKMRRAIAEFHTYIQNNGHFIPNYGERYRCGERI
STGFVESTVNQVVAKRMEKKQQMRWTPKGAHLLLQVRTKVLNQDWKEVVDRWYSPPLKETGVPNAA
Blast result :
Comments
ISSysp7 is 65% aa similar to ISAzs26.
ORFA and ORFB are passenger gene respectively annotated as hypothetical protein and resolvase/recombinase.
ORFA and ORFB are passenger gene respectively annotated as hypothetical protein and resolvase/recombinase.
References
1] ISfinder annotation (2013)
2] Li,T., Zhao,J., Zhao,C., Liu,Z., Zhao,F., Marquardt,J., Nomura,C.T., Persson,S., Detter,J.Chris., Richardson,P.M., Lanz,C., Schuster,S.C., Wang,J., Li,S., Huang,X., Cai,T., Yu,Z., Luo,J., Zhao,J. and Bryant,D.A. (2008) Direct submission GenBank.
2] Li,T., Zhao,J., Zhao,C., Liu,Z., Zhao,F., Marquardt,J., Nomura,C.T., Persson,S., Detter,J.Chris., Richardson,P.M., Lanz,C., Schuster,S.C., Wang,J., Li,S., Huang,X., Cai,T., Yu,Z., Luo,J., Zhao,J. and Bryant,D.A. (2008) Direct submission GenBank.