ISSto7
- Family IS1
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_003106 | ND | Sulfolobus tokodaii | Sulfolobus tokodaii 7 |
DNA section
IS Length : 1174 bp
Ends
IR Length : 43/50
IRL : GGGACTGTTCTCAAACAGTCATGAAATTCGATAATTGTTTGTAAAAATAT
IRR : GGGACTGTTCTCATGCAGTCATGAAATTCGAAAGTTATTTGTAATATTAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GAAAAGACTT | CGGAACCT | AAGCTTTCTA | 8 |
TAGACCAATT | AGAGAATA | AAATAATAGA | 8 |
DNA sequence
GGGACTGTTCTCAAACAGTCATGAAATTCGATAATTGTTTGTAAAAATATTATGATGTTCATAAAAATAGTTTTTTCTAATGTGACTCACTAAGAAGAGC
TAGAAGTATAAAGAGTAAAAATCATTTTTAGAAAAGTTTATGTGCAAGGGTCACGAGGTTATATGGGGGTTCACGAGATGAACCTCGTAACCCTTGCACA
ATTAATACTTTTGGTTCTGAGGAATTTAAATTTTAAGCCAAGAAAACACGATTTAGAAGACCTTGCTTACGCAATAGCAGCATACCTACTAGGAGTACAA
GTCACCAAACTGGGAATACCACCATCAACACTATACTACTACACTAAAAAGCTTGGAGTAAAGAGGAGAAGAGAAGAAAAACCACCTTGTCCCTCATGCA
AATCAAACAAAATAGTAAAGAACGGCTCATCTAGAGGAAAAACAAAATACAAGTGCAAAACTTGCGGGAGAACATTCTATCAAACACAAAACCACAAGAT
GAGTAAAGAACAAAAGGAAAGGATACTGAAAGAGTACACTAACAGAATGAGTATGAGAGGAGTAGCAAGGGTTGAAGGAAAACCACTAACAACAATATAC
AGTCTAGTGATGAGGAAGGGGATAGAGGCATATGCACACTTATTAATCCTACAAGAACAACTAAAGAACTTCACAGCAAAATCCACGGTAATTGATGAGA
GTTGGACTTACGTGAGGATTAGGCACGGTTCAAAAAGGGAGAACTTGTGGATATGGAACGCATTAACTGATGGTGTACCCTTCTTCACCACGGGTGATAG
GGATTATAGGACTTTCAGTTACCTCTTGAATACCCTACCTAAGAGCAAGGTATATTACACTGATGATTACTCAGTTTATCAAGTACTCAACAATCATGTT
GTAAGTAAGAAGTACACATACACCGTGGAGAGTTATAATTCTTACTGTAGGACTCATTTAGCTAGGTTGGCAAGGGATACAAGGGCTGTTAATAGGAGTA
GGAGGATGGTTGACTATAGTCTTGCCTTGTTGAACGTCATGTACCCGGTAGTTTATTCAAGGGAGAAAACTCCCTTAAATGAGGCTTACTTGAAGGGGGT
ACAGTATATTAGAAGTAAACTGATATAATATTACAAATAACTTTCGAATTTCATGACTGCATGAGAACAGTCCC
TAGAAGTATAAAGAGTAAAAATCATTTTTAGAAAAGTTTATGTGCAAGGGTCACGAGGTTATATGGGGGTTCACGAGATGAACCTCGTAACCCTTGCACA
ATTAATACTTTTGGTTCTGAGGAATTTAAATTTTAAGCCAAGAAAACACGATTTAGAAGACCTTGCTTACGCAATAGCAGCATACCTACTAGGAGTACAA
GTCACCAAACTGGGAATACCACCATCAACACTATACTACTACACTAAAAAGCTTGGAGTAAAGAGGAGAAGAGAAGAAAAACCACCTTGTCCCTCATGCA
AATCAAACAAAATAGTAAAGAACGGCTCATCTAGAGGAAAAACAAAATACAAGTGCAAAACTTGCGGGAGAACATTCTATCAAACACAAAACCACAAGAT
GAGTAAAGAACAAAAGGAAAGGATACTGAAAGAGTACACTAACAGAATGAGTATGAGAGGAGTAGCAAGGGTTGAAGGAAAACCACTAACAACAATATAC
AGTCTAGTGATGAGGAAGGGGATAGAGGCATATGCACACTTATTAATCCTACAAGAACAACTAAAGAACTTCACAGCAAAATCCACGGTAATTGATGAGA
GTTGGACTTACGTGAGGATTAGGCACGGTTCAAAAAGGGAGAACTTGTGGATATGGAACGCATTAACTGATGGTGTACCCTTCTTCACCACGGGTGATAG
GGATTATAGGACTTTCAGTTACCTCTTGAATACCCTACCTAAGAGCAAGGTATATTACACTGATGATTACTCAGTTTATCAAGTACTCAACAATCATGTT
GTAAGTAAGAAGTACACATACACCGTGGAGAGTTATAATTCTTACTGTAGGACTCATTTAGCTAGGTTGGCAAGGGATACAAGGGCTGTTAATAGGAGTA
GGAGGATGGTTGACTATAGTCTTGCCTTGTTGAACGTCATGTACCCGGTAGTTTATTCAAGGGAGAAAACTCCCTTAAATGAGGCTTACTTGAAGGGGGT
ACAGTATATTAGAAGTAAACTGATATAATATTACAAATAACTTTCGAATTTCATGACTGCATGAGAACAGTCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
987 bp | 328 aa | 142 | 1128 | + | No |
Chemistry : DDE
ORF sequence :
MQGSRGYMGVHEMNLVTLAQLILLVLRNLNFKPRKHDLEDLAYAIAAYLLGVQVTKLGIPPSTLYYYTKKLGVKRRREEKPPCPSCKSNKIVKNGSSRGK
TKYKCKTCGRTFYQTQNHKMSKEQKERILKEYTNRMSMRGVARVEGKPLTTIYSLVMRKGIEAYAHLLILQEQLKNFTAKSTVIDESWTYVRIRHGSKRE
NLWIWNALTDGVPFFTTGDRDYRTFSYLLNTLPKSKVYYTDDYSVYQVLNNHVVSKKYTYTVESYNSYCRTHLARLARDTRAVNRSRRMVDYSLALLNVM
YPVVYSREKTPLNEAYLKGVQYIRSKLI
TKYKCKTCGRTFYQTQNHKMSKEQKERILKEYTNRMSMRGVARVEGKPLTTIYSLVMRKGIEAYAHLLILQEQLKNFTAKSTVIDESWTYVRIRHGSKRE
NLWIWNALTDGVPFFTTGDRDYRTFSYLLNTLPKSKVYYTDDYSVYQVLNNHVVSKKYTYTVESYNSYCRTHLARLARDTRAVNRSRRMVDYSLALLNVM
YPVVYSREKTPLNEAYLKGVQYIRSKLI
Blast result :
Comments
ISSto7 is 48% aa similar to ISMae3.
References
1] Kawarabayasi,Y., Hino,Y., Horikawa,H., Jin-no,K., Takahashi,M., Sekine,M., Baba,S., Ankai,A., Kosugi,H., Hosoyama,A., Fukui,S., Nagai,Y., Nishijima,K., Otsuka,R., Nakazawa,H., Takamiya,M., Kato,Y., Yoshizawa,T., Tanaka,T., Kudoh,Y., Yamazaki,J., Kushida,N., Oguchi,A., Aoki,K., Masuda,S., Yanagii,M., Nishimura,M., Yamagishi,A., Oshima,T. and Kikuchi,H. (2001) DNA Res. 8 (4), 123-140