ISPpu9
- Family IS110
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AE015451 | ND | Pseudomonas putida | Pseudomonas putida KT2440 |
DNA section
IS Length : 2043 bp
Ends
Left end : ATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTT
Right end : CTGTGACCACGTATAGAAGAGTGAACACTTCGCCGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTAGAAAGAACAGTGGGTTATCTTTTGTTTGATAGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCCGTGTAGG | AG | CGGGTTTACCGCGAA | 2 |
TCCGTGTAGG | AG | CGGGTTTACCGCGAA | 2 |
GCCCTGTAGG | AG | CGGGTTTACCGCGAA | 2 |
CGCCCGTAGG | AG | CGGGTTTACCGCGAA | 2 |
TCCCCGTAGG | AG | CGGGTTCACCGCGAA | 2 |
GCCCTGTAGG | AG | CGGGTTCACCGCGAA | 2 |
TACCTGTAGG | AG | CGGGTTCACCGCGAA | 2 |
CCACTGTAGG | AG | CGGGTTTACCGCGAA | 2 |
DNA sequence
ATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTT
GGCCCGGTAGGGCCAGCCGCCTTTTGCTTTGTTAGGGTTCGTGTGCGCGGGACAGAGATCGTAGCCAGCACTGGTGTGTGTCTGCACACCCGCGTAGGAG
AGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAGAGAGTGAACCCTTTCGCCACCGTGTGCCCCG
CGCGCCCTTTATCCTGCGAGGATTCATCATGGCGCGCAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGATGTCGGTGGT
CGAGAGCATTTCGTGGCGGTCGATCCCCGGCACGAAAATCCCGTCCAGTCGTTCACGTCCTTTACTGACGACCTGCTCAAGATGGCTAACTGGCTTGAAA
GCCTGGGGATCAAGGTCGTTGCCATGGAATCCACGGGGGTTTATTGGATTCCAATTTACGAGATTCTCAGCGAGCGCGGTTTTGACGTTTATCTCGTCAA
TGCCAGAGCAACTCGGCAAATCACGGGCCGTAAATCAGATGTGCTGGATTGCCAGTGGATCTGGCAGCTGATGACTCATGGACTGCTCAGAGGCGCATTC
CGCCCCGATGATCTGACCTGCTGCGTCCGGTCATTGGTCAGGCAGCGTGCTTCCAAAGTGAAAGACCAGGCGCAGACGCTGAACCGGATGCAAAAGGCCA
TGAGCCAAATGAACATCCAGCTGGCCAATGTCATCAGTGATATTTCCGGTGTAACTGGCATGAAGATTTTGCGGGCCATCTGCGCAGGTGAACGGGACCC
AGTGCAACTGGCTGAACTAACCGACCGCCGCATCAAGGCAGGCAAGGAGGCTGTCGCTCGGAGTCTTCATGGCAATTGGCGGCGCGAGCATTTGCATGCG
CTAACTCAGGAATTGGCTGCCTATGACTTCCTGGAGCAGCAAATTGCAGATTGTGACGACGCCATAAAAGCCGCGTTAGAGCAGTTGCCGGTGCTGCAAA
ACAAGCCAGAGCCATCCAAGAAGCCTTTACGGAGCCCACACCGAAACGGCGCCCAACAGACTGTATTGCATCAGACTTTGTGGAAAGTTCTTGGCGTGGA
CCTAACCGCAATTCCAACCATTGGGGTGGACACTGCATTAGTGCTGGCAGGGGAGATCGGTACAGATCTATCACGCTTCCCGTCCTCACAGCACTTCTGC
TCTTGGTTGGGACTGGCTCCCCCTACCCGAATTTCCGGCGGTCATCGACTGGCAGGTGGTGGGCCCAAAATAGTCAATCGAGCAGCGCAAGCACTCAAGC
AGGCTGCATCCAATGCCCGTAACGACAAGGGTTTCATTGGCGCATCGCACCGAGCCAGACTGACTCGAATGGATACCAGCTGCGCCATCAAGGCCACTGC
GCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAACCAGAAGCCAAGACCGGCAG
GTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGATC
ACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGAT
CCGGGTAGGTCAGCCGCCGAATACTTTGCTATGGTTCCCAATGCGCGGGAAAGAGGCCGTAGACCGCACTGGTGTGCTGCTTTGCTCCCGAATGAGAGAG
TGGCCCAAATGGCATCGGCGTTAATCCCTGTCGGCACAGCTTGCTGTGACCACGTATAGAAGAGTGAACACTTCGCCGCCATTGACCCCGCGCGCCTGTT
TTTTTCGCTAGAAAGAACAGTGGGTTATCTTTTGTTTGATAGA
GGCCCGGTAGGGCCAGCCGCCTTTTGCTTTGTTAGGGTTCGTGTGCGCGGGACAGAGATCGTAGCCAGCACTGGTGTGTGTCTGCACACCCGCGTAGGAG
AGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAGAGAGTGAACCCTTTCGCCACCGTGTGCCCCG
CGCGCCCTTTATCCTGCGAGGATTCATCATGGCGCGCAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGATGTCGGTGGT
CGAGAGCATTTCGTGGCGGTCGATCCCCGGCACGAAAATCCCGTCCAGTCGTTCACGTCCTTTACTGACGACCTGCTCAAGATGGCTAACTGGCTTGAAA
GCCTGGGGATCAAGGTCGTTGCCATGGAATCCACGGGGGTTTATTGGATTCCAATTTACGAGATTCTCAGCGAGCGCGGTTTTGACGTTTATCTCGTCAA
TGCCAGAGCAACTCGGCAAATCACGGGCCGTAAATCAGATGTGCTGGATTGCCAGTGGATCTGGCAGCTGATGACTCATGGACTGCTCAGAGGCGCATTC
CGCCCCGATGATCTGACCTGCTGCGTCCGGTCATTGGTCAGGCAGCGTGCTTCCAAAGTGAAAGACCAGGCGCAGACGCTGAACCGGATGCAAAAGGCCA
TGAGCCAAATGAACATCCAGCTGGCCAATGTCATCAGTGATATTTCCGGTGTAACTGGCATGAAGATTTTGCGGGCCATCTGCGCAGGTGAACGGGACCC
AGTGCAACTGGCTGAACTAACCGACCGCCGCATCAAGGCAGGCAAGGAGGCTGTCGCTCGGAGTCTTCATGGCAATTGGCGGCGCGAGCATTTGCATGCG
CTAACTCAGGAATTGGCTGCCTATGACTTCCTGGAGCAGCAAATTGCAGATTGTGACGACGCCATAAAAGCCGCGTTAGAGCAGTTGCCGGTGCTGCAAA
ACAAGCCAGAGCCATCCAAGAAGCCTTTACGGAGCCCACACCGAAACGGCGCCCAACAGACTGTATTGCATCAGACTTTGTGGAAAGTTCTTGGCGTGGA
CCTAACCGCAATTCCAACCATTGGGGTGGACACTGCATTAGTGCTGGCAGGGGAGATCGGTACAGATCTATCACGCTTCCCGTCCTCACAGCACTTCTGC
TCTTGGTTGGGACTGGCTCCCCCTACCCGAATTTCCGGCGGTCATCGACTGGCAGGTGGTGGGCCCAAAATAGTCAATCGAGCAGCGCAAGCACTCAAGC
AGGCTGCATCCAATGCCCGTAACGACAAGGGTTTCATTGGCGCATCGCACCGAGCCAGACTGACTCGAATGGATACCAGCTGCGCCATCAAGGCCACTGC
GCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAACCAGAAGCCAAGACCGGCAG
GTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGATC
ACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGAT
CCGGGTAGGTCAGCCGCCGAATACTTTGCTATGGTTCCCAATGCGCGGGAAAGAGGCCGTAGACCGCACTGGTGTGCTGCTTTGCTCCCGAATGAGAGAG
TGGCCCAAATGGCATCGGCGTTAATCCCTGTCGGCACAGCTTGCTGTGACCACGTATAGAAGAGTGAACACTTCGCCGCCATTGACCCCGCGCGCCTGTT
TTTTTCGCTAGAAAGAACAGTGGGTTATCTTTTGTTTGATAGA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1329 bp | 442 aa | 329 | 1657 | + | No |
Chemistry : DEDD
ORF sequence :
MARKPSKQRFTVVHPDCAAIDVGGREHFVAVDPRHENPVQSFTSFTDDLLKMANWLESLGIKVVAMESTGVYWIPIYEILSERGFDVYLVNARATRQITG
RKSDVLDCQWIWQLMTHGLLRGAFRPDDLTCCVRSLVRQRASKVKDQAQTLNRMQKAMSQMNIQLANVISDISGVTGMKILRAICAGERDPVQLAELTDR
RIKAGKEAVARSLHGNWRREHLHALTQELAAYDFLEQQIADCDDAIKAALEQLPVLQNKPEPSKKPLRSPHRNGAQQTVLHQTLWKVLGVDLTAIPTIGV
DTALVLAGEIGTDLSRFPSSQHFCSWLGLAPPTRISGGHRLAGGGPKIVNRAAQALKQAASNARNDKGFIGASHRARLTRMDTSCAIKATAHQLARLVYN
LLTKKQAYVEQGLEEFETRSQDRQVRALLRKARKLGYQLVAA
RKSDVLDCQWIWQLMTHGLLRGAFRPDDLTCCVRSLVRQRASKVKDQAQTLNRMQKAMSQMNIQLANVISDISGVTGMKILRAICAGERDPVQLAELTDR
RIKAGKEAVARSLHGNWRREHLHALTQELAAYDFLEQQIADCDDAIKAALEQLPVLQNKPEPSKKPLRSPHRNGAQQTVLHQTLWKVLGVDLTAIPTIGV
DTALVLAGEIGTDLSRFPSSQHFCSWLGLAPPTRISGGHRLAGGGPKIVNRAAQALKQAASNARNDKGFIGASHRARLTRMDTSCAIKATAHQLARLVYN
LLTKKQAYVEQGLEEFETRSQDRQVRALLRKARKLGYQLVAA
Blast result :
Comments
ISPpu9 occurs in at least 2 forms that encode transposase : a short autonomous element which extends from IRLeft-IRRight, and a 345-346 bp longer head-to-tail pseudo-dimer which extends from IRLeft-IRRight'. ORF coordinates are reported in the context of the longer form. The conserved target site is a species-specific repetitive extragenic palindromic (REP) sequence identified previously in Pseudomonas putida KT2440 (Aranda-Olmedo et.al. Nucleic Acids Res. 2002 Apr 15;30(8):1826-33.).
References
1] DeBoy., R. (2002) Direct submission