ISH10
- Family IS66
- Group ISBst12
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_002607 | ND | Halobacterium sp. | Halobacterium salinarum R1 plasmid PHS3 Halobacterium sp. NRC-1 Halobacterium sp. NRC-1 pNRC200 Halobacterium sp. NRC-1 pNRC100 |
DNA section
IS Length : 1584 bp
Ends
IR Length : 16/18
IRL : GTACGTGTTTAGCCCCAGTGAATTTCGGCACTGTCTCGTAGCAGGCGACC
IRR : GTACGTGTTTACCCCGAGGTCTCGACAGCCGGCACAGCGTGAGCCCGTGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CCCTCCGTTG | TGATACTA | TAAGTATCCG | 8 |
TTAGACGTTC | CGCCGGGG | TCTTCGAGC | 8 |
AGTTGTTTTA | CCGATCTA | TAACGTAGAA | 8 |
AGTTGTTTTA | CCGATCTA | TAACGTAGAA | 8 |
AGTTGTTTTA | CCGATCTA | TAACGTAGAA | 8 |
TAACTGGTTA | ATACAGTT | TACATGTGAC | 8 |
TACCGATCTA | GACTTACGTT | 0 |
DNA sequence
GTACGTGTTTAGCCCCAGTGAATTTCGGCACTGTCTCGTAGCAGGCGACCAATCGGGGAGATATGCACCCTCAGCAAGGGCTAATTGAACTTCTTCAGGG
ATGGTCTCCGCTCGGAAACCATCCCGGTGACCCTGCTGAGGTAACGCTGAGGTGGTCATAGTGGATAGGGATGACCTCAGCAAAGACGAACTTCTCTCAC
GGTTTCTCCAAATGGAAGAGCGAATCGACGAGTTGGAGGAGAAACTCGAGCAGAAGGACGAACGAATCGAAGAACTCGAAACACGTCTTCGCAAATACGA
GAATCCACATACACCGCCTAGTAAGCGACGGTCGGGGACTGACGAGTCCCCGACCTCTCAAGACGACGAAGACGACGATGTCCGAACTGACGGCGGCACC
CCCGGACGAAAAGACGGTCACGACCCGGAGTGGCGTTCTACAACTGATCCCGACGAAGAAATCGAAGTCACCTGTGACTGTTGTCCTGAGTGTGGCGACC
ACTTCGACGAGTCGGTGGGCGTCAGCCCCCGACTCGTCGAGGAGATCCCTGATCCGCAGCCCCCAGAAATCACCCGGTACAACCGCCACTACTACCAGTG
CGATTCCTGTGGAACAGAGACAGTTGCGGCTCACCCCGACTGCCCCGATGAGGGGCAGTTCGGGGTGAACGTCATCGCTCAATCAGCTCTGTCACGGTAC
GATCACCGCCTTCCCTACCGGAAAATCGCTGACCGCTTCGAGCAACTGCATGAACTCGAACTCTCGGGTGCATCCGCGTGGCACGCGACCGAGCGCGCTG
CGCGCGCCGGTCGCTGTGAGTACGAGCAGATCCGTCGAGAGATCCAAGATGCCGACGTGGTCCACATCGACGAAACAGGCATCAAACGTGACGGTGAGCA
GGCGTGGATTTGGACGTTCAAGACCGCTCAGCATACGTTATACGCGGTGAGAGAGAGTCGCGGGAGTGATGTTCCCGCGGAAGTCCTCGGCGAGGACTTC
GCGGGAACGGTCATCTGTGACGGGTGGACGGCGTACCCAGCTTTCAGCAGCAACCTCCAGCGGTGTTGGGCGCATATTCTTCGAGAGGCTGAAGACGCCG
CCGAAAAGCAGGCAGAAGGTGAACCGATCTACCACGCTCTCAGACAGGTGTACGTCGCTCTCCAGGCCCGGCTGGAGAGCGACCCAAGTCCTCGTGAGAG
AGCAGACCTCCAGCGTGTGGCGCGAAGAGAGCTTGAATCGCTGATTGAACGGTCAGTACCCGACGGACCAGTGGCAACACTGCTCGGGAAGATCGAAGGA
GGTCTTGACCACTGGCTCACCTTCGTCGGTGAGCCAGCGGTCTCTCCGACAAACAATGCCGCAGAGAACGCGCTTCGTGAGCCAGTAGTTCTCCGGAAAA
TCATCGGAACGCTCCGCAATGACCGAGGAATGTTCGTTCACGAGACGGTCTTGTCCCTGCTGGCGACGTGGCGCCAGCAGGGACGCAATCCATACGAAGA
GCTTCGTCGAGTCGTCAGCAGCAATGAGATGCTCTCACGGGCTCACGCTGTGCCGGCTGTCGAGACCTCGGGGTAAACACGTAC
ATGGTCTCCGCTCGGAAACCATCCCGGTGACCCTGCTGAGGTAACGCTGAGGTGGTCATAGTGGATAGGGATGACCTCAGCAAAGACGAACTTCTCTCAC
GGTTTCTCCAAATGGAAGAGCGAATCGACGAGTTGGAGGAGAAACTCGAGCAGAAGGACGAACGAATCGAAGAACTCGAAACACGTCTTCGCAAATACGA
GAATCCACATACACCGCCTAGTAAGCGACGGTCGGGGACTGACGAGTCCCCGACCTCTCAAGACGACGAAGACGACGATGTCCGAACTGACGGCGGCACC
CCCGGACGAAAAGACGGTCACGACCCGGAGTGGCGTTCTACAACTGATCCCGACGAAGAAATCGAAGTCACCTGTGACTGTTGTCCTGAGTGTGGCGACC
ACTTCGACGAGTCGGTGGGCGTCAGCCCCCGACTCGTCGAGGAGATCCCTGATCCGCAGCCCCCAGAAATCACCCGGTACAACCGCCACTACTACCAGTG
CGATTCCTGTGGAACAGAGACAGTTGCGGCTCACCCCGACTGCCCCGATGAGGGGCAGTTCGGGGTGAACGTCATCGCTCAATCAGCTCTGTCACGGTAC
GATCACCGCCTTCCCTACCGGAAAATCGCTGACCGCTTCGAGCAACTGCATGAACTCGAACTCTCGGGTGCATCCGCGTGGCACGCGACCGAGCGCGCTG
CGCGCGCCGGTCGCTGTGAGTACGAGCAGATCCGTCGAGAGATCCAAGATGCCGACGTGGTCCACATCGACGAAACAGGCATCAAACGTGACGGTGAGCA
GGCGTGGATTTGGACGTTCAAGACCGCTCAGCATACGTTATACGCGGTGAGAGAGAGTCGCGGGAGTGATGTTCCCGCGGAAGTCCTCGGCGAGGACTTC
GCGGGAACGGTCATCTGTGACGGGTGGACGGCGTACCCAGCTTTCAGCAGCAACCTCCAGCGGTGTTGGGCGCATATTCTTCGAGAGGCTGAAGACGCCG
CCGAAAAGCAGGCAGAAGGTGAACCGATCTACCACGCTCTCAGACAGGTGTACGTCGCTCTCCAGGCCCGGCTGGAGAGCGACCCAAGTCCTCGTGAGAG
AGCAGACCTCCAGCGTGTGGCGCGAAGAGAGCTTGAATCGCTGATTGAACGGTCAGTACCCGACGGACCAGTGGCAACACTGCTCGGGAAGATCGAAGGA
GGTCTTGACCACTGGCTCACCTTCGTCGGTGAGCCAGCGGTCTCTCCGACAAACAATGCCGCAGAGAACGCGCTTCGTGAGCCAGTAGTTCTCCGGAAAA
TCATCGGAACGCTCCGCAATGACCGAGGAATGTTCGTTCACGAGACGGTCTTGTCCCTGCTGGCGACGTGGCGCCAGCAGGGACGCAATCCATACGAAGA
GCTTCGTCGAGTCGTCAGCAGCAATGAGATGCTCTCACGGGCTCACGCTGTGCCGGCTGTCGAGACCTCGGGGTAAACACGTAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1425 bp | 475 aa | 152 | 1576 | + | No |
Chemistry : DDE
ORF sequence :
MVIVDRDDLSKDELLSRFLQMEERIDELEEKLEQKDERIEELETRLRKYENPHTPPSKRRSGTDESPTSQDDEDDDVRTDGGTPGRKDGHDPEWRSTTDP
DEEIEVTCDCCPECGDHFDESVGVSPRLVEEIPDPQPPEITRYNRHYYQCDSCGTETVAAHPDCPDEGQFGVNVIAQSALSRYDHRLPYRKIADRFEQLH
ELELSGASAWHATERAARAGRCEYEQIRREIQDADVVHIDETGIKRDGEQAWIWTFKTAQHTLYAVRESRGSDVPAEVLGEDFAGTVICDGWTAYPAFSS
NLQRCWAHILREAEDAAEKQAEGEPIYHALRQVYVALQARLESDPSPRERADLQRVARRELESLIERSVPDGPVATLLGKIEGGLDHWLTFVGEPAVSPT
NNAAENALREPVVLRKIIGTLRNDRGMFVHETVLSLLATWRQQGRNPYEELRRVVSSNEMLSRAHAVPAVETSG
DEEIEVTCDCCPECGDHFDESVGVSPRLVEEIPDPQPPEITRYNRHYYQCDSCGTETVAAHPDCPDEGQFGVNVIAQSALSRYDHRLPYRKIADRFEQLH
ELELSGASAWHATERAARAGRCEYEQIRREIQDADVVHIDETGIKRDGEQAWIWTFKTAQHTLYAVRESRGSDVPAEVLGEDFAGTVICDGWTAYPAFSS
NLQRCWAHILREAEDAAEKQAEGEPIYHALRQVYVALQARLESDPSPRERADLQRVARRELESLIERSVPDGPVATLLGKIEGGLDHWLTFVGEPAVSPT
NNAAENALREPVVLRKIIGTLRNDRGMFVHETVLSLLATWRQQGRNPYEELRRVVSSNEMLSRAHAVPAVETSG
Blast result :
Comments
ISH10 is 88% aa similar to ISH10B and 60% aa similar to ISArch15.
References
1] Ng,W.V., Kennedy,S.P., Mahairas,G.G., Berquist,B., Pan,M., Shukla,H.D., Lasky,S.R., Baliga,N., Thorsson,V., Sbrogna,J., Swartzell,S., Weir,D., Hall,J., Dahl,T.A., Welti,R., Goo,Y.A., Leithauser,B., Keller,K., Cruz,R., Danson,M.J., Hough,D.W., Maddocks,D.G., Jablonski,P.E., Krebs,M.P., Angevine,C.M., Dale,H., Isenbarger,T.A., Peck,R.F., Pohlschrod,M., Spudich,J.L., Jung,K.-H., Alam,M., Freitas,T., Hou,S., Daniels,C.J., Dennis,P.P., Omer,A.D., Ebhardt,H., Lowe,T.M., Liang,P., Riley,M., Hood,L. and DasSarma,S.(2000) Proc. Natl. Acad. Sci. USA 24 (97), 12176-12181.