ISCARN63

  • Family ISNCY
  • Group IS1202
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Metagenomic data
Metagenomic data from CARNOULES
DNA section
IS Length : 1387 bp

Ends


IR Length : 42/52

IRL : TGTAGGAGCAAAGCAGAGATGTCCGGTCCTTAGCAAAGCAGAGATGTCCG
IRR : TGTAAGCGCAAAGCGATGATGTCCGGTTTGCGCAAAGCAGAGATGTCCGC

Insertion site


Left flankDirect repeatRight flankDR Length
AACGAATACGCCAACACGGTGCCCTCCGATCTCTGGTCGGCGCTCTCCCAGGTT17
NNNNNNNNNNTCAGGGCTCGAGCTTCCTCGCGTGTCGCCGGGATATAATC15
AACATACTTTCTAAGAAACAACCACCGCGCGAAAAAAAATGAACCAAAAAGAAGAATTGGACCA16
TCATGGGAACGTATGTTTGTCTATATTTACGATGTATTTGTGCAACAGTTCGTCACCCTCCGA15

DNA sequence

TGTAGGAGCAAAGCAGAGATGTCCGGTCCTTAGCAAAGCAGAGATGTCCGGTCGATGGCCAAGGGCGCTCCTCTATGGAGTCTACTTTGACCACTCAGGA
AATCACCCGCGTCCAGACCCTTCAACGGGTATTGGACGGTTATCTCACCCAGCGGGCCGCAGCCTGCGAACTCGGCCTCTCCGTTCGCCACGTGCATCGC
CTTCTTGGGCGCCTGCGCGATGGCGGGGTCGCGGCCATGGCCTCTCGACGCCGTTGCAAAGCCCCGAATAACCAAATCGATGCAGCAACCTGCCGGCGAA
TTCTGGAACGCTGCCGGAGCGACTATCTCGGATTCGGTCCCACCTTCTTAGCCCAAACCCTTGCGCAGCGCGACGAGATCAGCGTGAGTCGCGAATGGCT
ACGCCGCTTGTTGATCGAGAATGCTCTGTGGAAATCAAAGCGCCGAAAACGCAATCTCCATCCGCTACGTGAACGACGTCCGCGATTTGGGGAGCTCATG
CAAATGGATGGATCGCCCCACAATTGGTTCGAAGGTCGCGCACCCGAGTGTACGCTCTTACTTGCCGTCGACGACGCTACCAGTCGGATCTGCAGCGCAC
GTTTTGAACGCACCGAAACCACCGACGGGTACTTTCGTTTGACTCGATCACATATCGAACGCTACGGGCGGTTCCTGGCCGCATACCCTGATAAGCACAG
CATTTTCCGCTACTCCGGCCAAAGCGTCGCCTCCGACGTTACGACGCAATATCAACGCGCTTGCAACGAATTGGACGTTGAACTCATTTGCGCAAATTCG
CCGCAAGCCAAAGGGCGCGTTGAGCGAGCAAATCGCACGCTTCAGGACCGATTGGTTAAAGCCATGCGGCTCGCCAACATTTGTGACATGGAAGCGGCAA
ATGCGTTTCTGCCCGGCTTCCTCGAAAATCATAATGCACAATTCGCATGTGAACCGGCCTGCAGCGACGACGCGCATCGCAGCGCATCGGGCTTCGATCT
CGACTACATCCTCTGTCGGCGTAAGGAACGTGTCATTACGAAAAATCTCATGTTCCAAATCAGCGACACCGTCTACGCGCTCACCGATGCCTACAGCAAA
CGCAATATCGTCACCGGCGCGCGCGTGGAGCTACGAATTCACACCGACGGGCGCATGACCGGGCATCACGGCTCACATGAGCTAAGCGTCAAAAGCCTCG
GGAAACGCGTCCGCAATGCGCCTATCGTGGGAGCAAAGGACCTCAACGCCCATCTCGACCGCCGCCTGCCCAATCCAAGGAAAGCTCACAAACCTGCGTT
GAATCACCCATGGACCTAATGCGCTCCGCAGCCCAAAGCGGACATCTCTGCTTTGCGCAAACCGGACATCATCGCTTTGCGCTTACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1245 bp414 aa751319+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MESTLTTQEITRVQTLQRVLDGYLTQRAAACELGLSVRHVHRLLGRLRDGGVAAMASRRRCKAPNNQIDAATCRRILERCRSDYLGFGPTFLAQTLAQRD
EISVSREWLRRLLIENALWKSKRRKRNLHPLRERRPRFGELMQMDGSPHNWFEGRAPECTLLLAVDDATSRICSARFERTETTDGYFRLTRSHIERYGRF
LAAYPDKHSIFRYSGQSVASDVTTQYQRACNELDVELICANSPQAKGRVERANRTLQDRLVKAMRLANICDMEAANAFLPGFLENHNAQFACEPACSDDA
HRSASGFDLDYILCRRKERVITKNLMFQISDTVYALTDAYSKRNIVTGARVELRIHTDGRMTGHHGSHELSVKSLGKRVRNAPIVGAKDLNAHLDRRLPN
PRKAHKPALNHPWT

 

Blast result :
Comments
ISCARN63 is 62% aa similar to ISCARN62.
References
1] ISfinder annotation (2008)