ISCARN63
- Family ISNCY
- Group IS1202
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Metagenomic data | Metagenomic data from CARNOULES |
DNA section
IS Length : 1387 bp
Ends
IR Length : 42/52
IRL : TGTAGGAGCAAAGCAGAGATGTCCGGTCCTTAGCAAAGCAGAGATGTCCG
IRR : TGTAAGCGCAAAGCGATGATGTCCGGTTTGCGCAAAGCAGAGATGTCCGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AACGAATACGCCAA | CACGGTGCCCTCCGATC | TCTGGTCGGCGCTCTCCCAGGTT | 17 |
NNNNNNNNNN | TCAGGGCTCGAGCTT | CCTCGCGTGTCGCCGGGATATAATC | 15 |
AACATACTTTCTAAGAAACAACCA | CCGCGCGAAAAAAAAT | GAACCAAAAAGAAGAATTGGACCA | 16 |
TCATGGGAACGTATGTTTGTCTA | TATTTACGATGTATT | TGTGCAACAGTTCGTCACCCTCCGA | 15 |
DNA sequence
TGTAGGAGCAAAGCAGAGATGTCCGGTCCTTAGCAAAGCAGAGATGTCCGGTCGATGGCCAAGGGCGCTCCTCTATGGAGTCTACTTTGACCACTCAGGA
AATCACCCGCGTCCAGACCCTTCAACGGGTATTGGACGGTTATCTCACCCAGCGGGCCGCAGCCTGCGAACTCGGCCTCTCCGTTCGCCACGTGCATCGC
CTTCTTGGGCGCCTGCGCGATGGCGGGGTCGCGGCCATGGCCTCTCGACGCCGTTGCAAAGCCCCGAATAACCAAATCGATGCAGCAACCTGCCGGCGAA
TTCTGGAACGCTGCCGGAGCGACTATCTCGGATTCGGTCCCACCTTCTTAGCCCAAACCCTTGCGCAGCGCGACGAGATCAGCGTGAGTCGCGAATGGCT
ACGCCGCTTGTTGATCGAGAATGCTCTGTGGAAATCAAAGCGCCGAAAACGCAATCTCCATCCGCTACGTGAACGACGTCCGCGATTTGGGGAGCTCATG
CAAATGGATGGATCGCCCCACAATTGGTTCGAAGGTCGCGCACCCGAGTGTACGCTCTTACTTGCCGTCGACGACGCTACCAGTCGGATCTGCAGCGCAC
GTTTTGAACGCACCGAAACCACCGACGGGTACTTTCGTTTGACTCGATCACATATCGAACGCTACGGGCGGTTCCTGGCCGCATACCCTGATAAGCACAG
CATTTTCCGCTACTCCGGCCAAAGCGTCGCCTCCGACGTTACGACGCAATATCAACGCGCTTGCAACGAATTGGACGTTGAACTCATTTGCGCAAATTCG
CCGCAAGCCAAAGGGCGCGTTGAGCGAGCAAATCGCACGCTTCAGGACCGATTGGTTAAAGCCATGCGGCTCGCCAACATTTGTGACATGGAAGCGGCAA
ATGCGTTTCTGCCCGGCTTCCTCGAAAATCATAATGCACAATTCGCATGTGAACCGGCCTGCAGCGACGACGCGCATCGCAGCGCATCGGGCTTCGATCT
CGACTACATCCTCTGTCGGCGTAAGGAACGTGTCATTACGAAAAATCTCATGTTCCAAATCAGCGACACCGTCTACGCGCTCACCGATGCCTACAGCAAA
CGCAATATCGTCACCGGCGCGCGCGTGGAGCTACGAATTCACACCGACGGGCGCATGACCGGGCATCACGGCTCACATGAGCTAAGCGTCAAAAGCCTCG
GGAAACGCGTCCGCAATGCGCCTATCGTGGGAGCAAAGGACCTCAACGCCCATCTCGACCGCCGCCTGCCCAATCCAAGGAAAGCTCACAAACCTGCGTT
GAATCACCCATGGACCTAATGCGCTCCGCAGCCCAAAGCGGACATCTCTGCTTTGCGCAAACCGGACATCATCGCTTTGCGCTTACA
AATCACCCGCGTCCAGACCCTTCAACGGGTATTGGACGGTTATCTCACCCAGCGGGCCGCAGCCTGCGAACTCGGCCTCTCCGTTCGCCACGTGCATCGC
CTTCTTGGGCGCCTGCGCGATGGCGGGGTCGCGGCCATGGCCTCTCGACGCCGTTGCAAAGCCCCGAATAACCAAATCGATGCAGCAACCTGCCGGCGAA
TTCTGGAACGCTGCCGGAGCGACTATCTCGGATTCGGTCCCACCTTCTTAGCCCAAACCCTTGCGCAGCGCGACGAGATCAGCGTGAGTCGCGAATGGCT
ACGCCGCTTGTTGATCGAGAATGCTCTGTGGAAATCAAAGCGCCGAAAACGCAATCTCCATCCGCTACGTGAACGACGTCCGCGATTTGGGGAGCTCATG
CAAATGGATGGATCGCCCCACAATTGGTTCGAAGGTCGCGCACCCGAGTGTACGCTCTTACTTGCCGTCGACGACGCTACCAGTCGGATCTGCAGCGCAC
GTTTTGAACGCACCGAAACCACCGACGGGTACTTTCGTTTGACTCGATCACATATCGAACGCTACGGGCGGTTCCTGGCCGCATACCCTGATAAGCACAG
CATTTTCCGCTACTCCGGCCAAAGCGTCGCCTCCGACGTTACGACGCAATATCAACGCGCTTGCAACGAATTGGACGTTGAACTCATTTGCGCAAATTCG
CCGCAAGCCAAAGGGCGCGTTGAGCGAGCAAATCGCACGCTTCAGGACCGATTGGTTAAAGCCATGCGGCTCGCCAACATTTGTGACATGGAAGCGGCAA
ATGCGTTTCTGCCCGGCTTCCTCGAAAATCATAATGCACAATTCGCATGTGAACCGGCCTGCAGCGACGACGCGCATCGCAGCGCATCGGGCTTCGATCT
CGACTACATCCTCTGTCGGCGTAAGGAACGTGTCATTACGAAAAATCTCATGTTCCAAATCAGCGACACCGTCTACGCGCTCACCGATGCCTACAGCAAA
CGCAATATCGTCACCGGCGCGCGCGTGGAGCTACGAATTCACACCGACGGGCGCATGACCGGGCATCACGGCTCACATGAGCTAAGCGTCAAAAGCCTCG
GGAAACGCGTCCGCAATGCGCCTATCGTGGGAGCAAAGGACCTCAACGCCCATCTCGACCGCCGCCTGCCCAATCCAAGGAAAGCTCACAAACCTGCGTT
GAATCACCCATGGACCTAATGCGCTCCGCAGCCCAAAGCGGACATCTCTGCTTTGCGCAAACCGGACATCATCGCTTTGCGCTTACA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1245 bp | 414 aa | 75 | 1319 | + | No |
Chemistry : DDE
ORF sequence :
MESTLTTQEITRVQTLQRVLDGYLTQRAAACELGLSVRHVHRLLGRLRDGGVAAMASRRRCKAPNNQIDAATCRRILERCRSDYLGFGPTFLAQTLAQRD
EISVSREWLRRLLIENALWKSKRRKRNLHPLRERRPRFGELMQMDGSPHNWFEGRAPECTLLLAVDDATSRICSARFERTETTDGYFRLTRSHIERYGRF
LAAYPDKHSIFRYSGQSVASDVTTQYQRACNELDVELICANSPQAKGRVERANRTLQDRLVKAMRLANICDMEAANAFLPGFLENHNAQFACEPACSDDA
HRSASGFDLDYILCRRKERVITKNLMFQISDTVYALTDAYSKRNIVTGARVELRIHTDGRMTGHHGSHELSVKSLGKRVRNAPIVGAKDLNAHLDRRLPN
PRKAHKPALNHPWT
EISVSREWLRRLLIENALWKSKRRKRNLHPLRERRPRFGELMQMDGSPHNWFEGRAPECTLLLAVDDATSRICSARFERTETTDGYFRLTRSHIERYGRF
LAAYPDKHSIFRYSGQSVASDVTTQYQRACNELDVELICANSPQAKGRVERANRTLQDRLVKAMRLANICDMEAANAFLPGFLENHNAQFACEPACSDDA
HRSASGFDLDYILCRRKERVITKNLMFQISDTVYALTDAYSKRNIVTGARVELRIHTDGRMTGHHGSHELSVKSLGKRVRNAPIVGAKDLNAHLDRRLPN
PRKAHKPALNHPWT
Blast result :
Comments
ISCARN63 is 62% aa similar to ISCARN62.
References
1] ISfinder annotation (2008)