ISCARN62

  • Family ISNCY
  • Group IS1202
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Metagenomic data
Metagenomic data from CARNOULES
DNA section
IS Length : 1398 bp

Ends


IR Length : 19/30

IRL : TGTAGGAGCAAAGCAGAGATGTCCGGTCCTTAGCAAAGCAGAGATGTCCC
IRR : TGTTAGCGCACGGCGATGATGTCCCCGCCTAGCACTTCAGAGATGTCCCC

Insertion site


Left flankDirect repeatRight flankDR Length
GAACGCCGGAGCGTCAAGGCTCGGGCGATAGCGGGAAGAGCGGAAGATC16

DNA sequence

TGTAGGAGCAAAGCAGAGATGTCCGGTCCTTAGCAAAGCAGAGATGTCCCCTGGGTTCGGTCTAAGGCTCTCCCATGGAGCTGATCACATTGACCCAAAG
GGAACTCCTTCGACTTCAGACGACTCAGCAGGTCGTCGACGGCGGCCGCACCGTGGCTGAAGCCGCCGAAATCCTCAGCCTCTCGACGCGCCAAGTCAAG
CGTCTGAGTCGGCGTCTCCGTCTGCACGGGGCAGCGGCCTTTGCATCCCTACAACGCGGCAAGACGCCCAATAACGCCTTTGACGCACCCCTGCATCAGC
GCGTTCTGGACTTAGCGCGATCCGACTATGAGGGATTCGGGCCAACGTTTCTGGCTGAAAAACTGGCCCAACGTGAGGGGGTGACCATCAGCCGTGAGAC
GCTGCGGCGATGGCTCATCGAGGCAAAATTGCATCGACCACGACGACGCCGAGAGAAACCACGACCGATGCGCGAACGGCGAGCGCGCCTGGGTGAACTC
GTTCAAGCTGACGGTTCTCCTCATCGCTGGTTTGAAGACCGCGGCGATCCGTGTTCGCTGCTGCTCTACATCGACGATGCCACAAGCAACGCCTTGGGCG
GCCTCTTCGTCGACCATGAATCAACCGATGGATACTTCCAACTCTTCGAACAGGCTTTCACCCAGCACGGTTTGCCGATGGCCATATACGTCGATAAGCA
CGGGGTCTTTCGCATCAATCATCCAGGCGCGACGGCGGACCACGAAACCCATGTCCAGCGGGCCCTGCGCGAGCTTGGCGTTGAATTGATCTGCGCCAAC
TCGCCGCAGGCCAAAGGGCGCGTTGAACGCGCCAATCGCACCCTCCAGGACCGGCTGGTCAAAGAATTTCGTCTTGCCGGCATCAGCAGCATTGCAGAAG
CCAATCGTGCGCTTCCTGATTACCTTGAGGACTTCAACCGTCGCTTCGCTATCCAACCACGCCAATGCGAGAACGCCCATCGCTCCAGCGAAGGATTGAA
GCTGGCAAGCATTCTCGTAAAACGCTACGAACGCGTACTCACCAGCAACCTGACCTTTCAAATCCACGACCGAATCTTCGCGATCGATCCATCACCGCTG
CATCGCTTTCGCAAAGGCATGCGCATCACCATCAGCATGACCCGCACCGGAAAACCCTTCATCGTTCATAAGCAACAGCGCATCGAACCGCGGTTCGTCG
GTCTCCGCCAGCGTACCGCACGCATTGTCGAGACCAAACGCCTCAATGCCCACATCGACCGCCGAGTACCCAACCCGAAAAAAAGCCCACCCACCAGCCA
AAAATCACCCCTGGCAAACCTCACTGCAACTCGCCGTAGCCAAAGCCCGGGGACATCTCTGAAGTGCTAGGCGGGGACATCATCGCCGTGCGCTAACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1296 bp432 aa751370+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MELITLTQRELLRLQTTQQVVDGGRTVAEAAEILSLSTRQVKRLSRRLRLHGAAAFASLQRGKTPNNAFDAPLHQRVLDLARSDYEGFGPTFLAEKLAQR
EGVTISRETLRRWLIEAKLHRPRRRREKPRPMRERRARLGELVQADGSPHRWFEDRGDPCSLLLYIDDATSNALGGLFVDHESTDGYFQLFEQAFTQHGL
PMAIYVDKHGVFRINHPGATADHETHVQRALRELGVELICANSPQAKGRVERANRTLQDRLVKEFRLAGISSIAEANRALPDYLEDFNRRFAIQPRQCEN
AHRSSEGLKLASILVKRYERVLTSNLTFQIHDRIFAIDPSPLHRFRKGMRITISMTRTGKPFIVHKQQRIEPRFVGLRQRTARIVETKRLNAHIDRRVPN
PKKSPPTSQKSPLANLTATRRSQSPGTSLKC

 

Blast result :
Comments
ISCARN62 is 82% aa similar to ISCARN53.
References
1] ISfinder annotation (2008)