ISCARN62
- Family ISNCY
- Group IS1202
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Metagenomic data | Metagenomic data from CARNOULES |
DNA section
IS Length : 1398 bp
Ends
IR Length : 19/30
IRL : TGTAGGAGCAAAGCAGAGATGTCCGGTCCTTAGCAAAGCAGAGATGTCCC
IRR : TGTTAGCGCACGGCGATGATGTCCCCGCCTAGCACTTCAGAGATGTCCCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GAACGCCGGAGCGTCAA | GGCTCGGGCGATAGCG | GGAAGAGCGGAAGATC | 16 |
DNA sequence
TGTAGGAGCAAAGCAGAGATGTCCGGTCCTTAGCAAAGCAGAGATGTCCCCTGGGTTCGGTCTAAGGCTCTCCCATGGAGCTGATCACATTGACCCAAAG
GGAACTCCTTCGACTTCAGACGACTCAGCAGGTCGTCGACGGCGGCCGCACCGTGGCTGAAGCCGCCGAAATCCTCAGCCTCTCGACGCGCCAAGTCAAG
CGTCTGAGTCGGCGTCTCCGTCTGCACGGGGCAGCGGCCTTTGCATCCCTACAACGCGGCAAGACGCCCAATAACGCCTTTGACGCACCCCTGCATCAGC
GCGTTCTGGACTTAGCGCGATCCGACTATGAGGGATTCGGGCCAACGTTTCTGGCTGAAAAACTGGCCCAACGTGAGGGGGTGACCATCAGCCGTGAGAC
GCTGCGGCGATGGCTCATCGAGGCAAAATTGCATCGACCACGACGACGCCGAGAGAAACCACGACCGATGCGCGAACGGCGAGCGCGCCTGGGTGAACTC
GTTCAAGCTGACGGTTCTCCTCATCGCTGGTTTGAAGACCGCGGCGATCCGTGTTCGCTGCTGCTCTACATCGACGATGCCACAAGCAACGCCTTGGGCG
GCCTCTTCGTCGACCATGAATCAACCGATGGATACTTCCAACTCTTCGAACAGGCTTTCACCCAGCACGGTTTGCCGATGGCCATATACGTCGATAAGCA
CGGGGTCTTTCGCATCAATCATCCAGGCGCGACGGCGGACCACGAAACCCATGTCCAGCGGGCCCTGCGCGAGCTTGGCGTTGAATTGATCTGCGCCAAC
TCGCCGCAGGCCAAAGGGCGCGTTGAACGCGCCAATCGCACCCTCCAGGACCGGCTGGTCAAAGAATTTCGTCTTGCCGGCATCAGCAGCATTGCAGAAG
CCAATCGTGCGCTTCCTGATTACCTTGAGGACTTCAACCGTCGCTTCGCTATCCAACCACGCCAATGCGAGAACGCCCATCGCTCCAGCGAAGGATTGAA
GCTGGCAAGCATTCTCGTAAAACGCTACGAACGCGTACTCACCAGCAACCTGACCTTTCAAATCCACGACCGAATCTTCGCGATCGATCCATCACCGCTG
CATCGCTTTCGCAAAGGCATGCGCATCACCATCAGCATGACCCGCACCGGAAAACCCTTCATCGTTCATAAGCAACAGCGCATCGAACCGCGGTTCGTCG
GTCTCCGCCAGCGTACCGCACGCATTGTCGAGACCAAACGCCTCAATGCCCACATCGACCGCCGAGTACCCAACCCGAAAAAAAGCCCACCCACCAGCCA
AAAATCACCCCTGGCAAACCTCACTGCAACTCGCCGTAGCCAAAGCCCGGGGACATCTCTGAAGTGCTAGGCGGGGACATCATCGCCGTGCGCTAACA
GGAACTCCTTCGACTTCAGACGACTCAGCAGGTCGTCGACGGCGGCCGCACCGTGGCTGAAGCCGCCGAAATCCTCAGCCTCTCGACGCGCCAAGTCAAG
CGTCTGAGTCGGCGTCTCCGTCTGCACGGGGCAGCGGCCTTTGCATCCCTACAACGCGGCAAGACGCCCAATAACGCCTTTGACGCACCCCTGCATCAGC
GCGTTCTGGACTTAGCGCGATCCGACTATGAGGGATTCGGGCCAACGTTTCTGGCTGAAAAACTGGCCCAACGTGAGGGGGTGACCATCAGCCGTGAGAC
GCTGCGGCGATGGCTCATCGAGGCAAAATTGCATCGACCACGACGACGCCGAGAGAAACCACGACCGATGCGCGAACGGCGAGCGCGCCTGGGTGAACTC
GTTCAAGCTGACGGTTCTCCTCATCGCTGGTTTGAAGACCGCGGCGATCCGTGTTCGCTGCTGCTCTACATCGACGATGCCACAAGCAACGCCTTGGGCG
GCCTCTTCGTCGACCATGAATCAACCGATGGATACTTCCAACTCTTCGAACAGGCTTTCACCCAGCACGGTTTGCCGATGGCCATATACGTCGATAAGCA
CGGGGTCTTTCGCATCAATCATCCAGGCGCGACGGCGGACCACGAAACCCATGTCCAGCGGGCCCTGCGCGAGCTTGGCGTTGAATTGATCTGCGCCAAC
TCGCCGCAGGCCAAAGGGCGCGTTGAACGCGCCAATCGCACCCTCCAGGACCGGCTGGTCAAAGAATTTCGTCTTGCCGGCATCAGCAGCATTGCAGAAG
CCAATCGTGCGCTTCCTGATTACCTTGAGGACTTCAACCGTCGCTTCGCTATCCAACCACGCCAATGCGAGAACGCCCATCGCTCCAGCGAAGGATTGAA
GCTGGCAAGCATTCTCGTAAAACGCTACGAACGCGTACTCACCAGCAACCTGACCTTTCAAATCCACGACCGAATCTTCGCGATCGATCCATCACCGCTG
CATCGCTTTCGCAAAGGCATGCGCATCACCATCAGCATGACCCGCACCGGAAAACCCTTCATCGTTCATAAGCAACAGCGCATCGAACCGCGGTTCGTCG
GTCTCCGCCAGCGTACCGCACGCATTGTCGAGACCAAACGCCTCAATGCCCACATCGACCGCCGAGTACCCAACCCGAAAAAAAGCCCACCCACCAGCCA
AAAATCACCCCTGGCAAACCTCACTGCAACTCGCCGTAGCCAAAGCCCGGGGACATCTCTGAAGTGCTAGGCGGGGACATCATCGCCGTGCGCTAACA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1296 bp | 432 aa | 75 | 1370 | + | No |
Chemistry : DDE
ORF sequence :
MELITLTQRELLRLQTTQQVVDGGRTVAEAAEILSLSTRQVKRLSRRLRLHGAAAFASLQRGKTPNNAFDAPLHQRVLDLARSDYEGFGPTFLAEKLAQR
EGVTISRETLRRWLIEAKLHRPRRRREKPRPMRERRARLGELVQADGSPHRWFEDRGDPCSLLLYIDDATSNALGGLFVDHESTDGYFQLFEQAFTQHGL
PMAIYVDKHGVFRINHPGATADHETHVQRALRELGVELICANSPQAKGRVERANRTLQDRLVKEFRLAGISSIAEANRALPDYLEDFNRRFAIQPRQCEN
AHRSSEGLKLASILVKRYERVLTSNLTFQIHDRIFAIDPSPLHRFRKGMRITISMTRTGKPFIVHKQQRIEPRFVGLRQRTARIVETKRLNAHIDRRVPN
PKKSPPTSQKSPLANLTATRRSQSPGTSLKC
EGVTISRETLRRWLIEAKLHRPRRRREKPRPMRERRARLGELVQADGSPHRWFEDRGDPCSLLLYIDDATSNALGGLFVDHESTDGYFQLFEQAFTQHGL
PMAIYVDKHGVFRINHPGATADHETHVQRALRELGVELICANSPQAKGRVERANRTLQDRLVKEFRLAGISSIAEANRALPDYLEDFNRRFAIQPRQCEN
AHRSSEGLKLASILVKRYERVLTSNLTFQIHDRIFAIDPSPLHRFRKGMRITISMTRTGKPFIVHKQQRIEPRFVGLRQRTARIVETKRLNAHIDRRVPN
PKKSPPTSQKSPLANLTATRRSQSPGTSLKC
Blast result :
Comments
ISCARN62 is 82% aa similar to ISCARN53.
References
1] ISfinder annotation (2008)