ISCARN52

  • Family IS110
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Metagenomic data
Metagenomic data from CARNOULES
DNA section
IS Length : 1640 bp

Ends


Left end : TGTCATCCCGAGTAGATGGGATGAGAAGGCCGGTCGCCGAAGCGGTTTTCGAAAGAACACCCGCGTTGCGCACTCAGAGGTGCAAGGAGACCGACCTTCA
Right end : CGGAGACCCAGAACGTAAAAATATGTAGAGAACACGACGAAGAAACCACTTGACAATACCGGCCTTCTCATGGAAGCTGCCGAAGGCAGCGTATCGAGGG

Insertion site


Left flankDirect repeatRight flankDR Length
AGGTTGCGAAGCGCACGCCCGGCCGCCTC0

DNA sequence

TGTCATCCCGAGTAGATGGGATGAGAAGGCCGGTCGCCGAAGCGGTTTTCGAAAGAACACCCGCGTTGCGCACTCAGAGGTGCAAGGAGACCGACCTTCA
TGAACAAGCATAGCAAGAACGCAGCCAAACGCAAGATGCGGGGAGCGCTCCGCGTGGCTGACTGCAACCTCCTCGCCGACGCCGTAGCGATCGGCATCGA
TCTCGGCGACAGCTCCAGCAATATCTGTGTCATCGATGCAGCCGGCGAGATCGAGAGCGAGTCGCGGATCCGCACGACCGAGGCGGGCGTGCGTGCCTAC
TTCGAACACCTCGCGCCCGCTCGGGTGGCGATGGAGACCGGGACGCACTCGGGTTGGGTGAGCCGGCTCATCGCCGAATACGGCCACCACGTCATCGTGG
CCAATGCGCGCGAATTGCGCAAGATCCACCAGAGCAATCACAAGAACGACCGCGCCGATGCGGAGGCTTTGGCACGGATGCTGCGCGCCGACCCGCGCTT
ACTTGCGCCGGTCACCCTCCGTTCTGCGGCGATGCAGAACGATATGGCGCTCTTACGCGCACGCGATGTCTTGGTGCGCACCCGCGCGCGGTGTACCACC
GCCGCGCGCGGGTTGGTCAAAGCCTCCGGGAAACGGTTGCCCGGCTGCAGCACGGAGAGTTTCCCTCGCAAAGTGCGCGCCTATATTCCCGCCGAGTTGC
AGGGCGCGCTCGAACCGTTGCTGGCGGTGCTCGAAGCGCTCGACGTGCAGATTCGTTCGTGCGACGAGCAGATCGCAACGATGGCGCAGGAGCGCTATCC
TGCGTCGGCAGTGCTCGAACAGATCGCCGGCATCGGCACGCTCACGGCAGTAGCGTTCATGCTGACGCTCGGCGACTGCGATCGCTTCGAGCACAGTCGC
GACGTTGGGCCGTATCTGGGCTTGGTGCCGCGTCAGGCGGACTCCGGTGCGTGTTCTCCGCAATTGGGGATCACCAAGGCCGGCAACTCCTCCATGCGTC
GATTGCTCGTTGGTAGCGCGCAGTATATCTTGGGGCGATTTGGGCCCGATACCGACCTGCGGCGCTTCGGCTTACGGATCGCTGCCCGCGGTGGGAAGAA
TGCCAAGAAGCGTGCGGTGATCGCCGTTGCGCGAAAACTCGCGGTGCTGCTGCATCGGCTGTGGGTGACCGCCGAGTGCTACGAACCCTTACGCAACGAG
CGACTCGCTCAAACGGCATCACCGACGGCAACCACCGCAACGGCCTCGACTGCGGCATCGTCGACAGCAACGACCGCCGTAGAAACTGCGGCATAACCTT
CAGGAGCATCCTCAACCGAAAGCAAACAAACTTCTTCCGAAACGACGTCCATCGACTTTTTCGCCGCGTTCGGGCGACTGCGGCAGGGGCTACGATCCTT
CAGAGATCGCCGAGTAGATAGCAGCGCCCACCTTCACGATGAACCCCAACATGCACCGAGCCCCCAAGGGCTCACCACGAGTGCGGATGGAAGCGGGGCG
GACCGAATTCTTCGACGACGTCACCACGGAAGCTCACCAGCGGAGACCCAGAACGTAAAAATATGTAGAGAACACGACGAAGAAACCACTTGACAATACC
GGCCTTCTCATGGAAGCTGCCGAAGGCAGCGTATCGAGGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1197 bp398 aa1001296+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MNKHSKNAAKRKMRGALRVADCNLLADAVAIGIDLGDSSSNICVIDAAGEIESESRIRTTEAGVRAYFEHLAPARVAMETGTHSGWVSRLIAEYGHHVIV
ANARELRKIHQSNHKNDRADAEALARMLRADPRLLAPVTLRSAAMQNDMALLRARDVLVRTRARCTTAARGLVKASGKRLPGCSTESFPRKVRAYIPAEL
QGALEPLLAVLEALDVQIRSCDEQIATMAQERYPASAVLEQIAGIGTLTAVAFMLTLGDCDRFEHSRDVGPYLGLVPRQADSGACSPQLGITKAGNSSMR
RLLVGSAQYILGRFGPDTDLRRFGLRIAARGGKNAKKRAVIAVARKLAVLLHRLWVTAECYEPLRNERLAQTASPTATTATASTAASSTATTAVETAA

 

Blast result :
Comments
ISCARN52 is 48% aa similar to ISBcen3.
References
1] ISfinder annotation (2008)