ISCARN52
- Family IS110
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Metagenomic data | Metagenomic data from CARNOULES |
DNA section
IS Length : 1640 bp
Ends
Left end : TGTCATCCCGAGTAGATGGGATGAGAAGGCCGGTCGCCGAAGCGGTTTTCGAAAGAACACCCGCGTTGCGCACTCAGAGGTGCAAGGAGACCGACCTTCA
Right end : CGGAGACCCAGAACGTAAAAATATGTAGAGAACACGACGAAGAAACCACTTGACAATACCGGCCTTCTCATGGAAGCTGCCGAAGGCAGCGTATCGAGGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AGGTTGCGAAGCGC | ACGCCCGGCCGCCTC | 0 |
DNA sequence
TGTCATCCCGAGTAGATGGGATGAGAAGGCCGGTCGCCGAAGCGGTTTTCGAAAGAACACCCGCGTTGCGCACTCAGAGGTGCAAGGAGACCGACCTTCA
TGAACAAGCATAGCAAGAACGCAGCCAAACGCAAGATGCGGGGAGCGCTCCGCGTGGCTGACTGCAACCTCCTCGCCGACGCCGTAGCGATCGGCATCGA
TCTCGGCGACAGCTCCAGCAATATCTGTGTCATCGATGCAGCCGGCGAGATCGAGAGCGAGTCGCGGATCCGCACGACCGAGGCGGGCGTGCGTGCCTAC
TTCGAACACCTCGCGCCCGCTCGGGTGGCGATGGAGACCGGGACGCACTCGGGTTGGGTGAGCCGGCTCATCGCCGAATACGGCCACCACGTCATCGTGG
CCAATGCGCGCGAATTGCGCAAGATCCACCAGAGCAATCACAAGAACGACCGCGCCGATGCGGAGGCTTTGGCACGGATGCTGCGCGCCGACCCGCGCTT
ACTTGCGCCGGTCACCCTCCGTTCTGCGGCGATGCAGAACGATATGGCGCTCTTACGCGCACGCGATGTCTTGGTGCGCACCCGCGCGCGGTGTACCACC
GCCGCGCGCGGGTTGGTCAAAGCCTCCGGGAAACGGTTGCCCGGCTGCAGCACGGAGAGTTTCCCTCGCAAAGTGCGCGCCTATATTCCCGCCGAGTTGC
AGGGCGCGCTCGAACCGTTGCTGGCGGTGCTCGAAGCGCTCGACGTGCAGATTCGTTCGTGCGACGAGCAGATCGCAACGATGGCGCAGGAGCGCTATCC
TGCGTCGGCAGTGCTCGAACAGATCGCCGGCATCGGCACGCTCACGGCAGTAGCGTTCATGCTGACGCTCGGCGACTGCGATCGCTTCGAGCACAGTCGC
GACGTTGGGCCGTATCTGGGCTTGGTGCCGCGTCAGGCGGACTCCGGTGCGTGTTCTCCGCAATTGGGGATCACCAAGGCCGGCAACTCCTCCATGCGTC
GATTGCTCGTTGGTAGCGCGCAGTATATCTTGGGGCGATTTGGGCCCGATACCGACCTGCGGCGCTTCGGCTTACGGATCGCTGCCCGCGGTGGGAAGAA
TGCCAAGAAGCGTGCGGTGATCGCCGTTGCGCGAAAACTCGCGGTGCTGCTGCATCGGCTGTGGGTGACCGCCGAGTGCTACGAACCCTTACGCAACGAG
CGACTCGCTCAAACGGCATCACCGACGGCAACCACCGCAACGGCCTCGACTGCGGCATCGTCGACAGCAACGACCGCCGTAGAAACTGCGGCATAACCTT
CAGGAGCATCCTCAACCGAAAGCAAACAAACTTCTTCCGAAACGACGTCCATCGACTTTTTCGCCGCGTTCGGGCGACTGCGGCAGGGGCTACGATCCTT
CAGAGATCGCCGAGTAGATAGCAGCGCCCACCTTCACGATGAACCCCAACATGCACCGAGCCCCCAAGGGCTCACCACGAGTGCGGATGGAAGCGGGGCG
GACCGAATTCTTCGACGACGTCACCACGGAAGCTCACCAGCGGAGACCCAGAACGTAAAAATATGTAGAGAACACGACGAAGAAACCACTTGACAATACC
GGCCTTCTCATGGAAGCTGCCGAAGGCAGCGTATCGAGGG
TGAACAAGCATAGCAAGAACGCAGCCAAACGCAAGATGCGGGGAGCGCTCCGCGTGGCTGACTGCAACCTCCTCGCCGACGCCGTAGCGATCGGCATCGA
TCTCGGCGACAGCTCCAGCAATATCTGTGTCATCGATGCAGCCGGCGAGATCGAGAGCGAGTCGCGGATCCGCACGACCGAGGCGGGCGTGCGTGCCTAC
TTCGAACACCTCGCGCCCGCTCGGGTGGCGATGGAGACCGGGACGCACTCGGGTTGGGTGAGCCGGCTCATCGCCGAATACGGCCACCACGTCATCGTGG
CCAATGCGCGCGAATTGCGCAAGATCCACCAGAGCAATCACAAGAACGACCGCGCCGATGCGGAGGCTTTGGCACGGATGCTGCGCGCCGACCCGCGCTT
ACTTGCGCCGGTCACCCTCCGTTCTGCGGCGATGCAGAACGATATGGCGCTCTTACGCGCACGCGATGTCTTGGTGCGCACCCGCGCGCGGTGTACCACC
GCCGCGCGCGGGTTGGTCAAAGCCTCCGGGAAACGGTTGCCCGGCTGCAGCACGGAGAGTTTCCCTCGCAAAGTGCGCGCCTATATTCCCGCCGAGTTGC
AGGGCGCGCTCGAACCGTTGCTGGCGGTGCTCGAAGCGCTCGACGTGCAGATTCGTTCGTGCGACGAGCAGATCGCAACGATGGCGCAGGAGCGCTATCC
TGCGTCGGCAGTGCTCGAACAGATCGCCGGCATCGGCACGCTCACGGCAGTAGCGTTCATGCTGACGCTCGGCGACTGCGATCGCTTCGAGCACAGTCGC
GACGTTGGGCCGTATCTGGGCTTGGTGCCGCGTCAGGCGGACTCCGGTGCGTGTTCTCCGCAATTGGGGATCACCAAGGCCGGCAACTCCTCCATGCGTC
GATTGCTCGTTGGTAGCGCGCAGTATATCTTGGGGCGATTTGGGCCCGATACCGACCTGCGGCGCTTCGGCTTACGGATCGCTGCCCGCGGTGGGAAGAA
TGCCAAGAAGCGTGCGGTGATCGCCGTTGCGCGAAAACTCGCGGTGCTGCTGCATCGGCTGTGGGTGACCGCCGAGTGCTACGAACCCTTACGCAACGAG
CGACTCGCTCAAACGGCATCACCGACGGCAACCACCGCAACGGCCTCGACTGCGGCATCGTCGACAGCAACGACCGCCGTAGAAACTGCGGCATAACCTT
CAGGAGCATCCTCAACCGAAAGCAAACAAACTTCTTCCGAAACGACGTCCATCGACTTTTTCGCCGCGTTCGGGCGACTGCGGCAGGGGCTACGATCCTT
CAGAGATCGCCGAGTAGATAGCAGCGCCCACCTTCACGATGAACCCCAACATGCACCGAGCCCCCAAGGGCTCACCACGAGTGCGGATGGAAGCGGGGCG
GACCGAATTCTTCGACGACGTCACCACGGAAGCTCACCAGCGGAGACCCAGAACGTAAAAATATGTAGAGAACACGACGAAGAAACCACTTGACAATACC
GGCCTTCTCATGGAAGCTGCCGAAGGCAGCGTATCGAGGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1197 bp | 398 aa | 100 | 1296 | + | No |
Chemistry : DEDD
ORF sequence :
MNKHSKNAAKRKMRGALRVADCNLLADAVAIGIDLGDSSSNICVIDAAGEIESESRIRTTEAGVRAYFEHLAPARVAMETGTHSGWVSRLIAEYGHHVIV
ANARELRKIHQSNHKNDRADAEALARMLRADPRLLAPVTLRSAAMQNDMALLRARDVLVRTRARCTTAARGLVKASGKRLPGCSTESFPRKVRAYIPAEL
QGALEPLLAVLEALDVQIRSCDEQIATMAQERYPASAVLEQIAGIGTLTAVAFMLTLGDCDRFEHSRDVGPYLGLVPRQADSGACSPQLGITKAGNSSMR
RLLVGSAQYILGRFGPDTDLRRFGLRIAARGGKNAKKRAVIAVARKLAVLLHRLWVTAECYEPLRNERLAQTASPTATTATASTAASSTATTAVETAA
ANARELRKIHQSNHKNDRADAEALARMLRADPRLLAPVTLRSAAMQNDMALLRARDVLVRTRARCTTAARGLVKASGKRLPGCSTESFPRKVRAYIPAEL
QGALEPLLAVLEALDVQIRSCDEQIATMAQERYPASAVLEQIAGIGTLTAVAFMLTLGDCDRFEHSRDVGPYLGLVPRQADSGACSPQLGITKAGNSSMR
RLLVGSAQYILGRFGPDTDLRRFGLRIAARGGKNAKKRAVIAVARKLAVLLHRLWVTAECYEPLRNERLAQTASPTATTATASTAASSTATTAVETAA
Blast result :
Comments
ISCARN52 is 48% aa similar to ISBcen3.
References
1] ISfinder annotation (2008)