ISCARN112

  • Family ISNCY
  • Group IS1202
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Metagenomic data
Metagenomic data from CARNOULES
DNA section
IS Length : 1468 bp

Ends


IR Length : 42/52

IRL : TGTCAGCCCCAAGTAGTAATGTCCGGTTTCTCCCAAATAGAAATGTCCGC
IRR : TGTCAACGCTAAATAGAAATGTCCGCTTTTCTGCAAAGTAGAAATGTCCG

Insertion site


Left flankDirect repeatRight flankDR Length
GATGTACAAGCAGCCGAAGGATGCGAATTTGTCAATTGGAAT0

DNA sequence

TGTCAGCCCCAAGTAGTAATGTCCGGTTTCTCCCAAATAGAAATGTCCGCTGTTGATTAAACTCACCGCTGTTAAAAACAGTGGCGGATATTTTTAAAAT
GGACAAACTCATGAGCCACAAAGAAGTGAAACGCGCCCAGGTATTGGAACTGCTGAAGGAGGATAAAATCAGCCAACAGGAAGCAGCTCGGCGGCTGGAT
GTCAGCACCCGTCAGGTACGCCGCCTGACCAGGCGTTATCAGGCGGCGGGGCTAGCTGGATTGGTCAGCAAGAAGCGCGGTAGCGCCTCGAACCGGCGAC
TGGATAACGTCACCTGCGCGACGGCCATTGGACTCATCGGCACACACTACCGGGACTTCGGTCCGACGCTGGCTTGCGAGAAACTCGCTGAGCGACACAA
CCTGCACCTGTCTGTCGAGAGTACGCGCCAGATGATGATAAAAGCAGGCTACTGGCGCACCAAAAAGGGCAGCACGGCGTGCGCCCATCCGATGCGTGAG
CGTCGCGCCCGGTTTGGCGAGATGATCCAAATAGACGGCAGCCCTCACGACTGGTTTGAAGGACGCGGCGATTATTGCACGCTGCTGGTGTTCATTGATG
ATGCCACCGGGGAGCTGACGCAGCTGCGCTTTGCCCCGACCGAGACCACGCTGGGCTACATGCATGTGCTGCACGACCACATTCTGATGCACGGCGTGCC
GGCTGCTCTGTACAGCGACAAACACAGCATCTTCCGCATCAATACCAAGGAGGTTGATCCGGAGGCCGAAACACAATTCTCACGGGCTGCGCGGGAATTG
GGAATCGAATGTATCCACGCCCACAGCCCGCAAGCCAAAGGACGTGTAGAACGCGCAAATCAGACCTTGCAGGACCGCTTGATCAAGGAAATGCGACTGG
CTGGCATCAACGACATGGACAGTGCCAACGCTTGGCTGCCGGATTACATTGCGGATCACAACCGACGGTTTGCGGTGGAACCCAAAGACGCGTCTGACGC
GCATCTGGCCTACCCTGGCACGTCGGCCAACCTGGTTCGCATCCTGTCCGTTCAGACAAAGAGAACGCTATCAAAGAACCTATCCTGCCAGTACGAGAAC
CAGTTGATGCAGGTAAAAACAACCGGTGCCGGTTTGGGATTACGGGGTGCGCAAGTCACGGTGCATGAGCACTTTGACGGGAGCTATGAGCTGCTATGGA
GAAAACGTAAACTGACGTATAGCGTGATGGATAAACCTGTCCGCCAGGCAAAAGTGGCCGACGGCAAATCGGTCAATGCGCGAGTGGATAAAGCGATGGC
GCGGCGCAATACGGGGCACAAACCCGCCGTGAATCATCCTTGGAGAAAAATGTCTGTCGGCAAGTCCGCCCACGACGGACAGCGCGCGGCATCGTAGCGA
AGAAAAAAAACGGCAAAGCGGACATTTCTACTTTGCAGAAAAGCGGACATTTCTATTTAGCGTTGACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1287 bp428 aa1111397+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSHKEVKRAQVLELLKEDKISQQEAARRLDVSTRQVRRLTRRYQAAGLAGLVSKKRGSASNRRLDNVTCATAIGLIGTHYRDFGPTLACEKLAERHNLHL
SVESTRQMMIKAGYWRTKKGSTACAHPMRERRARFGEMIQIDGSPHDWFEGRGDYCTLLVFIDDATGELTQLRFAPTETTLGYMHVLHDHILMHGVPAAL
YSDKHSIFRINTKEVDPEAETQFSRAARELGIECIHAHSPQAKGRVERANQTLQDRLIKEMRLAGINDMDSANAWLPDYIADHNRRFAVEPKDASDAHLA
YPGTSANLVRILSVQTKRTLSKNLSCQYENQLMQVKTTGAGLGLRGAQVTVHEHFDGSYELLWRKRKLTYSVMDKPVRQAKVADGKSVNARVDKAMARRN
TGHKPAVNHPWRKMSVGKSAHDGQRAAS

 

Blast result :
Comments
ISCARN112 is 59% aa similar to ISCARN63.
References
1] ISfinder annotation (2009)