ISCARN112
- Family ISNCY
- Group IS1202
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Metagenomic data | Metagenomic data from CARNOULES |
DNA section
IS Length : 1468 bp
Ends
IR Length : 42/52
IRL : TGTCAGCCCCAAGTAGTAATGTCCGGTTTCTCCCAAATAGAAATGTCCGC
IRR : TGTCAACGCTAAATAGAAATGTCCGCTTTTCTGCAAAGTAGAAATGTCCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GATGTACAAGCAGCCGAAGGATGC | GAATTTGTCAATTGGAAT | 0 |
DNA sequence
TGTCAGCCCCAAGTAGTAATGTCCGGTTTCTCCCAAATAGAAATGTCCGCTGTTGATTAAACTCACCGCTGTTAAAAACAGTGGCGGATATTTTTAAAAT
GGACAAACTCATGAGCCACAAAGAAGTGAAACGCGCCCAGGTATTGGAACTGCTGAAGGAGGATAAAATCAGCCAACAGGAAGCAGCTCGGCGGCTGGAT
GTCAGCACCCGTCAGGTACGCCGCCTGACCAGGCGTTATCAGGCGGCGGGGCTAGCTGGATTGGTCAGCAAGAAGCGCGGTAGCGCCTCGAACCGGCGAC
TGGATAACGTCACCTGCGCGACGGCCATTGGACTCATCGGCACACACTACCGGGACTTCGGTCCGACGCTGGCTTGCGAGAAACTCGCTGAGCGACACAA
CCTGCACCTGTCTGTCGAGAGTACGCGCCAGATGATGATAAAAGCAGGCTACTGGCGCACCAAAAAGGGCAGCACGGCGTGCGCCCATCCGATGCGTGAG
CGTCGCGCCCGGTTTGGCGAGATGATCCAAATAGACGGCAGCCCTCACGACTGGTTTGAAGGACGCGGCGATTATTGCACGCTGCTGGTGTTCATTGATG
ATGCCACCGGGGAGCTGACGCAGCTGCGCTTTGCCCCGACCGAGACCACGCTGGGCTACATGCATGTGCTGCACGACCACATTCTGATGCACGGCGTGCC
GGCTGCTCTGTACAGCGACAAACACAGCATCTTCCGCATCAATACCAAGGAGGTTGATCCGGAGGCCGAAACACAATTCTCACGGGCTGCGCGGGAATTG
GGAATCGAATGTATCCACGCCCACAGCCCGCAAGCCAAAGGACGTGTAGAACGCGCAAATCAGACCTTGCAGGACCGCTTGATCAAGGAAATGCGACTGG
CTGGCATCAACGACATGGACAGTGCCAACGCTTGGCTGCCGGATTACATTGCGGATCACAACCGACGGTTTGCGGTGGAACCCAAAGACGCGTCTGACGC
GCATCTGGCCTACCCTGGCACGTCGGCCAACCTGGTTCGCATCCTGTCCGTTCAGACAAAGAGAACGCTATCAAAGAACCTATCCTGCCAGTACGAGAAC
CAGTTGATGCAGGTAAAAACAACCGGTGCCGGTTTGGGATTACGGGGTGCGCAAGTCACGGTGCATGAGCACTTTGACGGGAGCTATGAGCTGCTATGGA
GAAAACGTAAACTGACGTATAGCGTGATGGATAAACCTGTCCGCCAGGCAAAAGTGGCCGACGGCAAATCGGTCAATGCGCGAGTGGATAAAGCGATGGC
GCGGCGCAATACGGGGCACAAACCCGCCGTGAATCATCCTTGGAGAAAAATGTCTGTCGGCAAGTCCGCCCACGACGGACAGCGCGCGGCATCGTAGCGA
AGAAAAAAAACGGCAAAGCGGACATTTCTACTTTGCAGAAAAGCGGACATTTCTATTTAGCGTTGACA
GGACAAACTCATGAGCCACAAAGAAGTGAAACGCGCCCAGGTATTGGAACTGCTGAAGGAGGATAAAATCAGCCAACAGGAAGCAGCTCGGCGGCTGGAT
GTCAGCACCCGTCAGGTACGCCGCCTGACCAGGCGTTATCAGGCGGCGGGGCTAGCTGGATTGGTCAGCAAGAAGCGCGGTAGCGCCTCGAACCGGCGAC
TGGATAACGTCACCTGCGCGACGGCCATTGGACTCATCGGCACACACTACCGGGACTTCGGTCCGACGCTGGCTTGCGAGAAACTCGCTGAGCGACACAA
CCTGCACCTGTCTGTCGAGAGTACGCGCCAGATGATGATAAAAGCAGGCTACTGGCGCACCAAAAAGGGCAGCACGGCGTGCGCCCATCCGATGCGTGAG
CGTCGCGCCCGGTTTGGCGAGATGATCCAAATAGACGGCAGCCCTCACGACTGGTTTGAAGGACGCGGCGATTATTGCACGCTGCTGGTGTTCATTGATG
ATGCCACCGGGGAGCTGACGCAGCTGCGCTTTGCCCCGACCGAGACCACGCTGGGCTACATGCATGTGCTGCACGACCACATTCTGATGCACGGCGTGCC
GGCTGCTCTGTACAGCGACAAACACAGCATCTTCCGCATCAATACCAAGGAGGTTGATCCGGAGGCCGAAACACAATTCTCACGGGCTGCGCGGGAATTG
GGAATCGAATGTATCCACGCCCACAGCCCGCAAGCCAAAGGACGTGTAGAACGCGCAAATCAGACCTTGCAGGACCGCTTGATCAAGGAAATGCGACTGG
CTGGCATCAACGACATGGACAGTGCCAACGCTTGGCTGCCGGATTACATTGCGGATCACAACCGACGGTTTGCGGTGGAACCCAAAGACGCGTCTGACGC
GCATCTGGCCTACCCTGGCACGTCGGCCAACCTGGTTCGCATCCTGTCCGTTCAGACAAAGAGAACGCTATCAAAGAACCTATCCTGCCAGTACGAGAAC
CAGTTGATGCAGGTAAAAACAACCGGTGCCGGTTTGGGATTACGGGGTGCGCAAGTCACGGTGCATGAGCACTTTGACGGGAGCTATGAGCTGCTATGGA
GAAAACGTAAACTGACGTATAGCGTGATGGATAAACCTGTCCGCCAGGCAAAAGTGGCCGACGGCAAATCGGTCAATGCGCGAGTGGATAAAGCGATGGC
GCGGCGCAATACGGGGCACAAACCCGCCGTGAATCATCCTTGGAGAAAAATGTCTGTCGGCAAGTCCGCCCACGACGGACAGCGCGCGGCATCGTAGCGA
AGAAAAAAAACGGCAAAGCGGACATTTCTACTTTGCAGAAAAGCGGACATTTCTATTTAGCGTTGACA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1287 bp | 428 aa | 111 | 1397 | + | No |
Chemistry : DDE
ORF sequence :
MSHKEVKRAQVLELLKEDKISQQEAARRLDVSTRQVRRLTRRYQAAGLAGLVSKKRGSASNRRLDNVTCATAIGLIGTHYRDFGPTLACEKLAERHNLHL
SVESTRQMMIKAGYWRTKKGSTACAHPMRERRARFGEMIQIDGSPHDWFEGRGDYCTLLVFIDDATGELTQLRFAPTETTLGYMHVLHDHILMHGVPAAL
YSDKHSIFRINTKEVDPEAETQFSRAARELGIECIHAHSPQAKGRVERANQTLQDRLIKEMRLAGINDMDSANAWLPDYIADHNRRFAVEPKDASDAHLA
YPGTSANLVRILSVQTKRTLSKNLSCQYENQLMQVKTTGAGLGLRGAQVTVHEHFDGSYELLWRKRKLTYSVMDKPVRQAKVADGKSVNARVDKAMARRN
TGHKPAVNHPWRKMSVGKSAHDGQRAAS
SVESTRQMMIKAGYWRTKKGSTACAHPMRERRARFGEMIQIDGSPHDWFEGRGDYCTLLVFIDDATGELTQLRFAPTETTLGYMHVLHDHILMHGVPAAL
YSDKHSIFRINTKEVDPEAETQFSRAARELGIECIHAHSPQAKGRVERANQTLQDRLIKEMRLAGINDMDSANAWLPDYIADHNRRFAVEPKDASDAHLA
YPGTSANLVRILSVQTKRTLSKNLSCQYENQLMQVKTTGAGLGLRGAQVTVHEHFDGSYELLWRKRKLTYSVMDKPVRQAKVADGKSVNARVDKAMARRN
TGHKPAVNHPWRKMSVGKSAHDGQRAAS
Blast result :
Comments
ISCARN112 is 59% aa similar to ISCARN63.
References
1] ISfinder annotation (2009)