ISBf12
- Family IS1380
- Group IS942
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Bacteroides fragilis | Bacteroides fragilis |
DNA section
IS Length : 1593 bp
Ends
IR Length : 13/15
IRL : CCTTAATTCCGCAACACTATTATAAATTAAACTTTTTAAGTACCTGAGCA
IRR : CCTCAAATCCGCAACTAAGCCCTTGAACGTCCTTATTGCGTTTACACGTC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AACATTTATA | TTTTA | TAGTTGTTTT | 5 |
DNA sequence
CCTTAATTCCGCAACACTATTATAAATTAAACTTTTTAAGTACCTGAGCAACAAAAAGTTGCTCAGGATTTTGCCATGTCAGAATTTTCACTTATCTTAG
TGTTGCAAAAAAAACAAGAGAATCCGACGATAGACATGGCGAAGATACAAATTAAATCTGAGAGACTCACTCCTTTTGGGGGATTATTTTCAATCATGGA
GCAATTTGACTCCACATTATCATCTGTAATCGACTCAACCCTCGGTCTAAGGTGTAGATCGTTCGGTTATCAGTACAGCGAAATCATCCGTTCTCTCATG
AGTATCTACTTCTGTAGCGGTTCATGTATTGAGGATGTCACTACTCATTTGATGAACCACCTCTCGCTTCATCCGACACTTCGCACTTGTAGCTCTGATA
CTATCCTCAGGGCGATAAAGGAGTTGACGCAAGAAAACATTTCATACACATCAGATATGGGCAAGACCTACGATTTCAATACGGCTGACACTCTCAATAC
TTTATTGCTCAATTGTATATTTGCATCTGGCCAACTGAAAGAGGGTGAGATGTATGATGTTGATTTCGACCATCAGTTCATAGAGACAGAGAAGTATGAT
GCAAAGCCTACATACAAGAAGTTCCTTGGTTATCGCCCTGGCGTGGCGGTTATTGGCGATTTGATAGTCGGTATAGAGAATAGCGATGGTAACACAAATG
TTCGTTTCCATCAGAAGGACACGCTGAAGAGGTTCTTTGCGAGATTTGAACAGAATGGGCTCACTATCAATCGCTTCAGAGCTGATTGTGGATCATGTTC
CGAGGAAATCGTGGAGGAAATAGAAAAACACTGCAAGTCCTTCTATATCCGTGCTAACCGCTGCAGTTCGATCTACAATGACACCTTTGCTCTCAAAGGC
TGGAAAACTGAGGAAATCAATGGCATTGAGTTTGAATTGAACTCTATCCTTGTTGAGAAGTGGAAAGGTAAGGCATATCGACTTGTGATTCAAAGACAGA
AACGGATGGATGGTGTGCAGGATTTTTGGGAAGGAGAATACACATACCGTTGTATCCTGACTAACGACTATGATTCTTCCGTAAGAGAAATTGTCGAGTT
CTATAACCTTCGTGGAGGAAAGGAACGTATCTTCGATGATATGAACAATGGTTTCGGGTGGGACAGATTGCCCAAATCCTTCATGGCAGAGAACACAGTG
TTCCTTCTTCTTACAGCACTTATCCGTAACTTTTACAAGGCCATTATTCAAAGACTTGACGTAAAGAAGTTCGGGCTCAATGCAACAAGTCGCATAAAAG
CGTTTGTCTTCAGGTTTATCTCTGTACCAGCCAAGTGGATCAGGACATCAAGGCGGTATGTGCTGAACATCTATACCTGTAATAATGCTTACGCAGATGT
TTTCCAGACTGATTTTGGATAATGCCTACAACTTATGGGAATGATATTGTGTATTGCCTCAAGTCACATTGTGGGGTAAGGGGATATTGTAGGCAGAAGT
GGGTGCTTCAAGTTCAAATTATCTGCAAATTCAGTAATGAGAGGACGTGTAAACGCAATAAGGACGTTCAAGGGCTTAGTTGCGGATTTGAGG
TGTTGCAAAAAAAACAAGAGAATCCGACGATAGACATGGCGAAGATACAAATTAAATCTGAGAGACTCACTCCTTTTGGGGGATTATTTTCAATCATGGA
GCAATTTGACTCCACATTATCATCTGTAATCGACTCAACCCTCGGTCTAAGGTGTAGATCGTTCGGTTATCAGTACAGCGAAATCATCCGTTCTCTCATG
AGTATCTACTTCTGTAGCGGTTCATGTATTGAGGATGTCACTACTCATTTGATGAACCACCTCTCGCTTCATCCGACACTTCGCACTTGTAGCTCTGATA
CTATCCTCAGGGCGATAAAGGAGTTGACGCAAGAAAACATTTCATACACATCAGATATGGGCAAGACCTACGATTTCAATACGGCTGACACTCTCAATAC
TTTATTGCTCAATTGTATATTTGCATCTGGCCAACTGAAAGAGGGTGAGATGTATGATGTTGATTTCGACCATCAGTTCATAGAGACAGAGAAGTATGAT
GCAAAGCCTACATACAAGAAGTTCCTTGGTTATCGCCCTGGCGTGGCGGTTATTGGCGATTTGATAGTCGGTATAGAGAATAGCGATGGTAACACAAATG
TTCGTTTCCATCAGAAGGACACGCTGAAGAGGTTCTTTGCGAGATTTGAACAGAATGGGCTCACTATCAATCGCTTCAGAGCTGATTGTGGATCATGTTC
CGAGGAAATCGTGGAGGAAATAGAAAAACACTGCAAGTCCTTCTATATCCGTGCTAACCGCTGCAGTTCGATCTACAATGACACCTTTGCTCTCAAAGGC
TGGAAAACTGAGGAAATCAATGGCATTGAGTTTGAATTGAACTCTATCCTTGTTGAGAAGTGGAAAGGTAAGGCATATCGACTTGTGATTCAAAGACAGA
AACGGATGGATGGTGTGCAGGATTTTTGGGAAGGAGAATACACATACCGTTGTATCCTGACTAACGACTATGATTCTTCCGTAAGAGAAATTGTCGAGTT
CTATAACCTTCGTGGAGGAAAGGAACGTATCTTCGATGATATGAACAATGGTTTCGGGTGGGACAGATTGCCCAAATCCTTCATGGCAGAGAACACAGTG
TTCCTTCTTCTTACAGCACTTATCCGTAACTTTTACAAGGCCATTATTCAAAGACTTGACGTAAAGAAGTTCGGGCTCAATGCAACAAGTCGCATAAAAG
CGTTTGTCTTCAGGTTTATCTCTGTACCAGCCAAGTGGATCAGGACATCAAGGCGGTATGTGCTGAACATCTATACCTGTAATAATGCTTACGCAGATGT
TTTCCAGACTGATTTTGGATAATGCCTACAACTTATGGGAATGATATTGTGTATTGCCTCAAGTCACATTGTGGGGTAAGGGGATATTGTAGGCAGAAGT
GGGTGCTTCAAGTTCAAATTATCTGCAAATTCAGTAATGAGAGGACGTGTAAACGCAATAAGGACGTTCAAGGGCTTAGTTGCGGATTTGAGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1347 bp | 448 aa | 76 | 1422 | + | No |
Chemistry : DDE
ORF sequence :
MSEFSLILVLQKKQENPTIDMAKIQIKSERLTPFGGLFSIMEQFDSTLSSVIDSTLGLRCRSFGYQYSEIIRSLMSIYFCSGSCIEDVTTHLMNHLSLHP
TLRTCSSDTILRAIKELTQENISYTSDMGKTYDFNTADTLNTLLLNCIFASGQLKEGEMYDVDFDHQFIETEKYDAKPTYKKFLGYRPGVAVIGDLIVGI
ENSDGNTNVRFHQKDTLKRFFARFEQNGLTINRFRADCGSCSEEIVEEIEKHCKSFYIRANRCSSIYNDTFALKGWKTEEINGIEFELNSILVEKWKGKA
YRLVIQRQKRMDGVQDFWEGEYTYRCILTNDYDSSVREIVEFYNLRGGKERIFDDMNNGFGWDRLPKSFMAENTVFLLLTALIRNFYKAIIQRLDVKKFG
LNATSRIKAFVFRFISVPAKWIRTSRRYVLNIYTCNNAYADVFQTDFG
TLRTCSSDTILRAIKELTQENISYTSDMGKTYDFNTADTLNTLLLNCIFASGQLKEGEMYDVDFDHQFIETEKYDAKPTYKKFLGYRPGVAVIGDLIVGI
ENSDGNTNVRFHQKDTLKRFFARFEQNGLTINRFRADCGSCSEEIVEEIEKHCKSFYIRANRCSSIYNDTFALKGWKTEEINGIEFELNSILVEKWKGKA
YRLVIQRQKRMDGVQDFWEGEYTYRCILTNDYDSSVREIVEFYNLRGGKERIFDDMNNGFGWDRLPKSFMAENTVFLLLTALIRNFYKAIIQRLDVKKFG
LNATSRIKAFVFRFISVPAKWIRTSRRYVLNIYTCNNAYADVFQTDFG
Blast result :
Comments
This IS element was found in the imipenem-resistant Bacteroides fragilis 334984 strain originating from Denmark.
ISBf12 transposase is 96% aa similar to IS613.
ISBf12 transposase is 96% aa similar to IS613.
References
1] Jozsef Soki (2011) Direct submission