IS679

  • Family IS66
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_002142 ND Escherichia coli
Escherichia coli O111:H- DNA, genomic island GEI2.04
Escherichia coli B171 plasmid pB171
Escherichia coli O111:H- DNA, genomic island GEI4.36
Escherichia coli O111:H- DNA, genomic island GEI4.52
Escherichia coli O111:H- DNA, genomic island GEI3.10
DNA section
IS Length : 2704 bp

Ends


IR Length : 17/25

IRL : GTAAGCGCATCATTTAAACCGTCTTTCGCCTCCCTTTCCTGTTTCCGATA
IRR : GTAAGCGGCTCGCCAGAACCGTATTGATATTTACTGAGAGGTCAGATCAA

Insertion site


Left flankDirect repeatRight flankDR Length
TGTTAATCCTGGATGATCTGGAGCCTCT8
TTCGGATGTTGTTAATCTCAACCGACGT8
GAATGGAAGAGTGGAGACTGCAGACAGG8
CAGCCAGGCCGTTGAAGCCATTTCTCAT8
CTTACCACACACTGTATCTGCTTTTTAT8
ACCACTGGTATAACAAGCAC0

DNA sequence

GTAAGCGCATCATTTAAACCGTCTTTCGCCTCCCTTTCCTGTTTCCGATACTAATGTCCATTTTCGCAGTAAAAGGACATTTAAGATGAATGCACGAAAA
GCGGTACTGGCAGATAATCCAGAATTGATCCTGCGTGTGCTACAGCTGAGATTTGACGAGTCACTGTCGTACCCGCGCATTTCTGCGCAGACTGGTGTCA
GCAAAACCGCCATTTTTTCTCTGGTGAGGCGATTTCACCAGGTATTCACTGACTGGCCTCTTTCCGGTGAATATTCCTGCGGGCAACTGGCCCGGGCTCT
TTTCCCGGGGCGATACCCTTCAGCCCCGACCGTGACTCAGCCTGTGAAAGCAGAGAAACCCCGCCGGAACCGATTTTCACCGGAGTTTAAATGGAGACTG
GTTCAGCAAACTCTTTTACCCGGTGCCTGTGTCGCACAAATAGCTCGAGAGAATGGAATTAACGATAACCTGCTCTTTAACTGGCGGCATCTCTGGCGTA
ACGGTGGCCTGCAACCGCCCGGCGAACATGAAACATCGCTACTTCCCGTGACGTTAACTCCGGAGCCGGATAATAAAATCCCGGCACCAGTGCAGATACC
TGAACAGATAAATACACTGCCAGACAGTCTGTGCTGCGAGCTGGTTCTGCCGGCCGGAACTCTCAGGCTGAAAGGTGAACTGACACCGGCGTTATTACAG
ACACTTATCCGCGAAATGAAAGGGAGCAGCCACTGATGATATCTCTCCCTGCCGGTTCGCGTATCTGGCTGGTTGCCGGTATCACCGATATGCGAAATGG
CTTTAACGGCCTGGCCTCAAAAGTTCAGAACGTCTTGAAGGATGACCCGTTCTCCGGGCATCTGTTCATCTTCCGCGAACGCCGGGGTGACCAGATAAAA
GTGCTGTGGGCTGACAGTGACGGACTGTGCCTCTTCACCAAACGCCTGGAGCGGGGCCGCTTCGTCTGGCCGGTCACCCGCGATGGAAAGGTTCACCTTA
CTCCGGCTCAGTTGTCCATGCTTCTCGAAGGCATCGACTGGAAGCACCCGAAACGAACGGAACGCGCTGGCATCCGCATATAACCCGTTGTAAAGTGAGG
ATATGGACACCTCACTTGCTCATGAGAATGCCCGCCTGCGGGCACTGTTGCAGACGCAACAGGACACCATCCGCCAGATGGCGAAATACAACCGCCTGCT
CTCACAGCGGGTGGCGGCTTATGCTTCCGAAATCAACCGGCTGAAGGCGCTGGTTGCGAAACTGCAGCGCATGCAGTTCGGTAAAAGCTCAGAAAAACTT
CGCGCTAAAACCGAACGGCAGATACAGGAAGCACAGGAGCGAATCAGCGCACTTCAGGAAGAAATGGCGGAAACGCTGGGTGAGCAATATGACCCGGTAC
TGCCATCCGCCCTGCGCCAGTCTTCAGCCCGTAAACCGTTACCGGCCTCACTTCCCCGTGAAACCCGGGTCATCCGGCCGGAAGAGGAATGCTGCCCGGC
CTGTGGTGGTGACCTTAGTCCTCTGGGGTGTGATGTGTCAGAGCAACTGGAGCTTATCAGCAGCGCCTTTAAGGTTATCGAAACACAACGTCCGAAACTG
GCCTGTTGTCGGTGCGACCATATCGTGCAGGCAACAGTACCTTCAAAACCCATTGCACGCAGTTATGCCGGAGCGGGGCTTCTGGCCCATGTTGTTACCG
GGAAATATGCAGACCATCTGCCGTTATACCGCCAGTCAGAAATATACCGTCGCCAGGGCGTGGAGCTGAGCCGCGCCACGCTGGGGCGCTGGACAGGTGC
CGTTGCTGAACTGCTGGAGCCGCTGTATGACGTCCTGCGCCAGTATGTGCTGATGCCCGGTAAAGTCCATGCTGATGATATCCCCGTCCCGGTCCAGGAG
CCGGGCAGCGGTAAAACCCGGACCGCCCGGCTGTGGGTCTACGTCCGTGATGACCGTAACGCCGGTTCGGAAATGCCCCCGGCGGTCTGGTTCGCGTACT
CACCGGACCGGAAAGGTATCCATCCACAAAATCATCTGGCCGGTTACAGCGGTGTGCTTCAGGCCGATGCTTACGGTGGTTACCGGGTGGTATACGAATC
CGGCAGAATAACGGAAGCCGCGTGTATGGCTCATGCCCGGAGAAAAATCCACGATGTGCATGCAAGAGTGCCCACCGACATCACCACGGAAGCCCTGCAG
CGTATCGGTGAACTGTATGCCATAGAGGCAGAAGTCCGGGGATGTACAGCAGAACAGCGTCTGGCGGCAAGAAAAGCCAGAGCTGCGCCACTGATGCAGA
CACTGTATGACTGGATACAGACTCAGATGAAAACACTGTCGAGTCACTCGGATACGGTAAAAGCGTTCGCATACCTGGTGAAACAGTGGGACGGGCTGAA
CGTGTACTGCAGTAATGGCTGGGTGGAAATCGACAACAACATCGCAGAGAACGCCTTACGGGGAGTGGCCGTAGGCCGGAAAAACTGGCTGTTCGCGGGT
TCCGACAGCGGTGGCGAACATGCGGCGGTGTTGTACTCGCTGATCGGCACATGCCGTCTGAACAATGTGGAACCAGAAAAATGGCTGCGTTACGTCATTG
AGCATATCCAGGATTGGCCGGCAAACCGGGTACGCGATCTGTTGCCCTGGAAAGTTGATCTGACCTCTCAGTAAATATCAATACGGTTCTGGCGAGCCGC
TTAC
Protein section
ORF number : 3

 

ORF 1
LengthBeginEndStrandFusion ORF
651 bp216 aa86736+No
ORF function : Accessory Gene
AG : IS66 TnpA

ORF sequence :

MNARKAVLADNPELILRVLQLRFDESLSYPRISAQTGVSKTAIFSLVRRFHQVFTDWPLSGEYSCGQLARALFPGRYPSAPTVTQPVKAEKPRRNRFSPE
FKWRLVQQTLLPGACVAQIARENGINDNLLFNWRHLWRNGGLQPPGEHETSLLPVTLTPEPDNKIPAPVQIPEQINTLPDSLCCELVLPAGTLRLKGELT
PALLQTLIREMKGSSH

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
348 bp115 aa7361083+No
ORF function : Accessory Gene
AG : IS66 TnpB

ORF sequence :

MISLPAGSRIWLVAGITDMRNGFNGLASKVQNVLKDDPFSGHLFIFRERRGDQIKVLWADSDGLCLFTKRLERGRFVWPVTRDGKVHLTPAQLSMLLEGI
DWKHPKRTERAGIRI

 

Blast result :
ORF 3
LengthBeginEndStrandFusion ORF
1572 bp523 aa11032674+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MDTSLAHENARLRALLQTQQDTIRQMAKYNRLLSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQEAQERISALQEEMAETLGEQYDPVL
PSALRQSSARKPLPASLPRETRVIRPEEECCPACGGDLSPLGCDVSEQLELISSAFKVIETQRPKLACCRCDHIVQATVPSKPIARSYAGAGLLAHVVTG
KYADHLPLYRQSEIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKTRTARLWVYVRDDRNAGSEMPPAVWFAYS
PDRKGIHPQNHLAGYSGVLQADAYGGYRVVYESGRITEAACMAHARRKIHDVHARVPTDITTEALQRIGELYAIEAEVRGCTAEQRLAARKARAAPLMQT
LYDWIQTQMKTLSSHSDTVKAFAYLVKQWDGLNVYCSNGWVEIDNNIAENALRGVAVGRKNWLFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIE
HIQDWPANRVRDLLPWKVDLTSQ

 

Blast result :
Comments
IS679 is respectively 70%, 99% and 98% aa similar to orfA, orfB and orfC of ISCro1.
References
1] Tobe,T., Hayashi,T., Han,C.G., Schoolnik,G.K., Ohtsubo,E. and Sasakawa,C. (1999) Infect. Immun. 67 (10), 5455-5462.