IS613
- Family IS1380
- Group IS942
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AB042549 | ND | Bacteroides fragilis | Bacteroides fragilis |
DNA section
IS Length : 1595 bp
Ends
IR Length : 13/15
IRL : CCTTAATTCCGCAACACTATTATAAAATATTTTTTTTAAGTACCTGAGCA
IRR : CCTCAAATCCGCAACTAAGCTCTTCAGCGTCCTTCTTGCGTCTAAACGTC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TATTC | TTTTA | TATGC | 5 |
DNA sequence
CCTTAATTCCGCAACACTATTATAAAATATTTTTTTTAAGTACCTGAGCAACAAAAAGTTGCTCAGGATTTTGCCATGTCAGAGGATTCACTTAACTTAG
TGTTGCAAAAAAATAATCAAACAAAACCTCATCAGGCATGGCAAAAATACAAATAAAATCCGAGAAGCTCACTCCTTTTGGAGGAATATTTTCAATCATG
GAGCAATTTGACTCCACATTGTCATCTGTAATCGACTCGACACTCGGTCTAAGGTGTAGCTCGTTCGGTTATCAGTACAGTGAAATCGTCCGTTCCCTCA
TGAGTATCTACTTCTGTGGTGGCTCATGCATTGAGGATGTCACTACTCATTTGATGAACCATCTCTCGCTCCATCCGACACTTCGTACTTGTAGTTCTGA
TACTATCCTCAGAGCGATAAAGGAACTGACGCAAGGAAACATCTCATACACATCAGATACGGGTAAGAACTACGATTTCAACACGGCTGACACACTCAAT
ACCTTACTGCTCAATTGTATGTTTGCATCCGGCCAACTGAAAGAGGGCGAGATGTATGATGTTGATTTCGACCATCAGTTCATAGAGACTGAGAAGTATG
ATGCAAAGCCTACATACAAGAAGTTCCTTGGTTATCGCCCTGGCGTGGCGGTTATTGACGACTTGATTGTTGGCATTGAGAATAGCGATGGTAACACCAA
CGTTCGTTTTCATCAGAAGGACACGCTGAAGAGATTCTTTGAGAGATTTGAGCAGAACGGACTTACAATCAATCGTTTCAGAGCTGATTGTGGATCATGT
TCCGAGGAAATCGTGGAGGAAATAGAGAAACACAGCAAATCCTTCTATATCCGCGCAAACCGCTGCAGTTCGCTCTACAATGACATCTTTGCTCTTAGAG
GCTGGAAGACTGAGGAAATCAATGGCATTGAGTTCGAATTGAACTCTATTCTTGTTGAGAAGTGGAAGGGTAAAGCATACCGACTTGTGATTCAAAGACA
GAAACGGATGGACGGTGTGCTGGATCTTTGGGAAGGAGAATACACATACCGTTGTATCCTGACTAACGACTATGAATCTTCCACAAGAGAAATTGTCGAG
TTCTATAACCTTCGTGGAGGAAAGGAACGTATCTTCGATGATATGAACAATGGTTTCGGGTGGGACAGATTGCCCAAATCCTTCATGGCAGAGAACACTG
TGTTCCTTCTTCTTACGGCACTTATCCGTAATTTCTACAAGGCCATTATCCACAGACTTGACGTAAAGAGGTTCGGACTCAATGCAACAAGTCGCATAAA
AGCGTTTGTCTTCAGGTTTGTCTCTGTACCAGCCAAGTGGATCAGAACATCAAGGCGGTATGTGCTGAATATCTATACCTGTAATAATGCTTACGCAGAT
ATTTTTCAGACTGATTTTGGATAACGCCTACAACTTATGGGTATGATACTGCGTATTGCCTCAAGTCGCATAGTGGGGCAAGGGGATATTGTGGGCAGAA
GTGGGTATTTCAGCCTCAATTTATCTGCTAATTCAGTGATGAGAGGACGTTTAGACGCAAGAAGGACGCTGAAGAGCTTAGTTGCGGATTTGAGG
TGTTGCAAAAAAATAATCAAACAAAACCTCATCAGGCATGGCAAAAATACAAATAAAATCCGAGAAGCTCACTCCTTTTGGAGGAATATTTTCAATCATG
GAGCAATTTGACTCCACATTGTCATCTGTAATCGACTCGACACTCGGTCTAAGGTGTAGCTCGTTCGGTTATCAGTACAGTGAAATCGTCCGTTCCCTCA
TGAGTATCTACTTCTGTGGTGGCTCATGCATTGAGGATGTCACTACTCATTTGATGAACCATCTCTCGCTCCATCCGACACTTCGTACTTGTAGTTCTGA
TACTATCCTCAGAGCGATAAAGGAACTGACGCAAGGAAACATCTCATACACATCAGATACGGGTAAGAACTACGATTTCAACACGGCTGACACACTCAAT
ACCTTACTGCTCAATTGTATGTTTGCATCCGGCCAACTGAAAGAGGGCGAGATGTATGATGTTGATTTCGACCATCAGTTCATAGAGACTGAGAAGTATG
ATGCAAAGCCTACATACAAGAAGTTCCTTGGTTATCGCCCTGGCGTGGCGGTTATTGACGACTTGATTGTTGGCATTGAGAATAGCGATGGTAACACCAA
CGTTCGTTTTCATCAGAAGGACACGCTGAAGAGATTCTTTGAGAGATTTGAGCAGAACGGACTTACAATCAATCGTTTCAGAGCTGATTGTGGATCATGT
TCCGAGGAAATCGTGGAGGAAATAGAGAAACACAGCAAATCCTTCTATATCCGCGCAAACCGCTGCAGTTCGCTCTACAATGACATCTTTGCTCTTAGAG
GCTGGAAGACTGAGGAAATCAATGGCATTGAGTTCGAATTGAACTCTATTCTTGTTGAGAAGTGGAAGGGTAAAGCATACCGACTTGTGATTCAAAGACA
GAAACGGATGGACGGTGTGCTGGATCTTTGGGAAGGAGAATACACATACCGTTGTATCCTGACTAACGACTATGAATCTTCCACAAGAGAAATTGTCGAG
TTCTATAACCTTCGTGGAGGAAAGGAACGTATCTTCGATGATATGAACAATGGTTTCGGGTGGGACAGATTGCCCAAATCCTTCATGGCAGAGAACACTG
TGTTCCTTCTTCTTACGGCACTTATCCGTAATTTCTACAAGGCCATTATCCACAGACTTGACGTAAAGAGGTTCGGACTCAATGCAACAAGTCGCATAAA
AGCGTTTGTCTTCAGGTTTGTCTCTGTACCAGCCAAGTGGATCAGAACATCAAGGCGGTATGTGCTGAATATCTATACCTGTAATAATGCTTACGCAGAT
ATTTTTCAGACTGATTTTGGATAACGCCTACAACTTATGGGTATGATACTGCGTATTGCCTCAAGTCGCATAGTGGGGCAAGGGGATATTGTGGGCAGAA
GTGGGTATTTCAGCCTCAATTTATCTGCTAATTCAGTGATGAGAGGACGTTTAGACGCAAGAAGGACGCTGAAGAGCTTAGTTGCGGATTTGAGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1287 bp | 428 aa | 138 | 1424 | + | No |
Chemistry : DDE
ORF sequence :
MAKIQIKSEKLTPFGGIFSIMEQFDSTLSSVIDSTLGLRCSSFGYQYSEIVRSLMSIYFCGGSCIEDVTTHLMNHLSLHPTLRTCSSDTILRAIKELTQG
NISYTSDTGKNYDFNTADTLNTLLLNCMFASGQLKEGEMYDVDFDHQFIETEKYDAKPTYKKFLGYRPGVAVIDDLIVGIENSDGNTNVRFHQKDTLKRF
FERFEQNGLTINRFRADCGSCSEEIVEEIEKHSKSFYIRANRCSSLYNDIFALRGWKTEEINGIEFELNSILVEKWKGKAYRLVIQRQKRMDGVLDLWEG
EYTYRCILTNDYESSTREIVEFYNLRGGKERIFDDMNNGFGWDRLPKSFMAENTVFLLLTALIRNFYKAIIHRLDVKRFGLNATSRIKAFVFRFVSVPAK
WIRTSRRYVLNIYTCNNAYADIFQTDFG
NISYTSDTGKNYDFNTADTLNTLLLNCMFASGQLKEGEMYDVDFDHQFIETEKYDAKPTYKKFLGYRPGVAVIDDLIVGIENSDGNTNVRFHQKDTLKRF
FERFEQNGLTINRFRADCGSCSEEIVEEIEKHSKSFYIRANRCSSLYNDIFALRGWKTEEINGIEFELNSILVEKWKGKAYRLVIQRQKRMDGVLDLWEG
EYTYRCILTNDYESSTREIVEFYNLRGGKERIFDDMNNGFGWDRLPKSFMAENTVFLLLTALIRNFYKAIIHRLDVKRFGLNATSRIKAFVFRFVSVPAK
WIRTSRRYVLNIYTCNNAYADIFQTDFG
Blast result :
Comments
IS613 is 88% aa similar to IS942.
References
1] Kato,N., Yamazoe,K., Han,C.G. and Ohtsubo,E. (2003) Antimicrob. Agents Chemother. 47 (3), 979-985