IS613

  • Family IS1380
  • Group IS942
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AB042549 ND Bacteroides fragilis
Bacteroides fragilis
DNA section
IS Length : 1595 bp

Ends


IR Length : 13/15

IRL : CCTTAATTCCGCAACACTATTATAAAATATTTTTTTTAAGTACCTGAGCA
IRR : CCTCAAATCCGCAACTAAGCTCTTCAGCGTCCTTCTTGCGTCTAAACGTC

Insertion site


Left flankDirect repeatRight flankDR Length
TATTCTTTTATATGC5

DNA sequence

CCTTAATTCCGCAACACTATTATAAAATATTTTTTTTAAGTACCTGAGCAACAAAAAGTTGCTCAGGATTTTGCCATGTCAGAGGATTCACTTAACTTAG
TGTTGCAAAAAAATAATCAAACAAAACCTCATCAGGCATGGCAAAAATACAAATAAAATCCGAGAAGCTCACTCCTTTTGGAGGAATATTTTCAATCATG
GAGCAATTTGACTCCACATTGTCATCTGTAATCGACTCGACACTCGGTCTAAGGTGTAGCTCGTTCGGTTATCAGTACAGTGAAATCGTCCGTTCCCTCA
TGAGTATCTACTTCTGTGGTGGCTCATGCATTGAGGATGTCACTACTCATTTGATGAACCATCTCTCGCTCCATCCGACACTTCGTACTTGTAGTTCTGA
TACTATCCTCAGAGCGATAAAGGAACTGACGCAAGGAAACATCTCATACACATCAGATACGGGTAAGAACTACGATTTCAACACGGCTGACACACTCAAT
ACCTTACTGCTCAATTGTATGTTTGCATCCGGCCAACTGAAAGAGGGCGAGATGTATGATGTTGATTTCGACCATCAGTTCATAGAGACTGAGAAGTATG
ATGCAAAGCCTACATACAAGAAGTTCCTTGGTTATCGCCCTGGCGTGGCGGTTATTGACGACTTGATTGTTGGCATTGAGAATAGCGATGGTAACACCAA
CGTTCGTTTTCATCAGAAGGACACGCTGAAGAGATTCTTTGAGAGATTTGAGCAGAACGGACTTACAATCAATCGTTTCAGAGCTGATTGTGGATCATGT
TCCGAGGAAATCGTGGAGGAAATAGAGAAACACAGCAAATCCTTCTATATCCGCGCAAACCGCTGCAGTTCGCTCTACAATGACATCTTTGCTCTTAGAG
GCTGGAAGACTGAGGAAATCAATGGCATTGAGTTCGAATTGAACTCTATTCTTGTTGAGAAGTGGAAGGGTAAAGCATACCGACTTGTGATTCAAAGACA
GAAACGGATGGACGGTGTGCTGGATCTTTGGGAAGGAGAATACACATACCGTTGTATCCTGACTAACGACTATGAATCTTCCACAAGAGAAATTGTCGAG
TTCTATAACCTTCGTGGAGGAAAGGAACGTATCTTCGATGATATGAACAATGGTTTCGGGTGGGACAGATTGCCCAAATCCTTCATGGCAGAGAACACTG
TGTTCCTTCTTCTTACGGCACTTATCCGTAATTTCTACAAGGCCATTATCCACAGACTTGACGTAAAGAGGTTCGGACTCAATGCAACAAGTCGCATAAA
AGCGTTTGTCTTCAGGTTTGTCTCTGTACCAGCCAAGTGGATCAGAACATCAAGGCGGTATGTGCTGAATATCTATACCTGTAATAATGCTTACGCAGAT
ATTTTTCAGACTGATTTTGGATAACGCCTACAACTTATGGGTATGATACTGCGTATTGCCTCAAGTCGCATAGTGGGGCAAGGGGATATTGTGGGCAGAA
GTGGGTATTTCAGCCTCAATTTATCTGCTAATTCAGTGATGAGAGGACGTTTAGACGCAAGAAGGACGCTGAAGAGCTTAGTTGCGGATTTGAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1287 bp428 aa1381424+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAKIQIKSEKLTPFGGIFSIMEQFDSTLSSVIDSTLGLRCSSFGYQYSEIVRSLMSIYFCGGSCIEDVTTHLMNHLSLHPTLRTCSSDTILRAIKELTQG
NISYTSDTGKNYDFNTADTLNTLLLNCMFASGQLKEGEMYDVDFDHQFIETEKYDAKPTYKKFLGYRPGVAVIDDLIVGIENSDGNTNVRFHQKDTLKRF
FERFEQNGLTINRFRADCGSCSEEIVEEIEKHSKSFYIRANRCSSLYNDIFALRGWKTEEINGIEFELNSILVEKWKGKAYRLVIQRQKRMDGVLDLWEG
EYTYRCILTNDYESSTREIVEFYNLRGGKERIFDDMNNGFGWDRLPKSFMAENTVFLLLTALIRNFYKAIIHRLDVKRFGLNATSRIKAFVFRFVSVPAK
WIRTSRRYVLNIYTCNNAYADIFQTDFG

 

Blast result :
Comments
IS613 is 88% aa similar to IS942.
References
1] Kato,N., Yamazoe,K., Han,C.G. and Ohtsubo,E. (2003) Antimicrob. Agents Chemother. 47 (3), 979-985