IS612
- Family IS1380
- Group IS942
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| AB042548 | ND | Bacteroides fragilis | Bacteroides fragilis Prevotella copri DSM 18205 |
DNA section
IS Length : 1598 bp
Ends
IR Length : 13/15
IRL : CCTTAATTCCGCAACACTATTATAAATATAACTTTTTAAGTACCTGAGCA
IRR : CCTAAAATCCGCAACTATCATCCAATACACGATTAAGGGTAGATTTATGA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CTTTT | ATATG | CTGTA | 5 |
DNA sequence
CCTTAATTCCGCAACACTATTATAAATATAACTTTTTAAGTACCTGAGCAACAAAAAGTTGCCCAGGATTTTGCCGTGTCAGATTTTTCACTTATCTTAG
TGTTGCAATTAGAAAACAAGCGAAAATCGTAACAAGGCATGGCAAAGGTACAAATAAAATCTGAGAAACTCACACCTTTTGGAGGAATTTTTTCAATCAT
GGAGAAATTTGACTCCATGCTTTCACCCGTTATCGACTCAACACTGGGTCAGAGATGCCGCAGTATCATCGGATATCAGTTCAGCGAGATAGTCCGTTCG
CTGATGAGCGTTTATTTCTGTGGCGGCTCATGCGTGGAAGACGTAACGTCACAACTGATGCGCCATCTCTCGTATCATCCTACCCTTCGTACATGCAGCT
CTGATACCATCCTCAGAGCCATCAAGGAACTGACACAGGAAAACATCTCCTATACTTCCGACCAAGGCAAGACCTATGATTTCAATACTGCAGACAAACT
CAACACATTGCTTATAAACGCTTTGGTTTCTACAGGCGAGTTGAAGGAAATTGAGGAATACGATGTTGACTTTGACCATCAGTTTCTTGAAACGGAGAAG
TATGATGCAAAACCGACCTACAAAAAGTTCCTCGGCTACAGGCCTGGCGTATATGTTATCGGTGACAAGATAGTCTATATCGAGAACAGCGATGGCAACA
CGAATGTGCGTTTTCATCAGGCAGACACCCATAAGAGATTCTTCGCTCTTCTGGAATCCCAGAACATCCGTGTAAATCGCTTCAGGGCAGACTGCGGTTC
CTGCTCGAAGGAAATCGTCAGTGAGATAGAGAAGCATTGCAAACATTTCTACATCCGTGCCAACCGATGCAGTTCGCTCTACAATGACATCTTTGCTCTG
AGAGGATGGAAGACGGAGGAGATTAACGGCATCCAGTTCGAACTCAATTCCATTCTCGTTGAGAAATGGGAAGGCAAGTGCTATCGTCTTGTCATCCAGA
GACAAAGACGCAACAGTGGCGACCTTGACCTATGGGAAGGCGAATACACTTACCGTTGTATTCTGACCAACGATTACAAGTCATCGACAAGGGACATTGT
TGAATTCTACAATCTGCGTGGCGGCAAGGAACGTATCTTTGACGACATGAACAACGGATTCGGTTGGAGCAGGCTCCCCAAGTCATTCATGGCGGAGAAT
ACTGTCTTTCTTCTGCTTACTGCATTGATACACAATTTCTACAAGACCATCATGAGCAGGCTTGACACCAAGGCTTTTGGGCTCAAGAAAACGAGTCGCA
TAAAGGCTTTTGTCTTCAGATTCATCTCCGTACCTGCCAAGTGGATCATGACTGCAAGGCAATACGTGCTGAATATCTACACAGAGAACCGCGCTTATGC
AAAACCCTTCAAAACAGAATTCGGATAAGAATCCTTTCTTTCCGGTTAGAATCTGCGTATTTCCTCAAGTCGCATCGTGGGGTAAGGGGATGTTGGCTAC
ATATTGATGTTGTGCTGTTGCTTTTTACTGAAAGCTACTACTAACGACTCATAAATCTACCCTTAATCGTGTATTGGATGATAGTTGCGGATTTTAGG
TGTTGCAATTAGAAAACAAGCGAAAATCGTAACAAGGCATGGCAAAGGTACAAATAAAATCTGAGAAACTCACACCTTTTGGAGGAATTTTTTCAATCAT
GGAGAAATTTGACTCCATGCTTTCACCCGTTATCGACTCAACACTGGGTCAGAGATGCCGCAGTATCATCGGATATCAGTTCAGCGAGATAGTCCGTTCG
CTGATGAGCGTTTATTTCTGTGGCGGCTCATGCGTGGAAGACGTAACGTCACAACTGATGCGCCATCTCTCGTATCATCCTACCCTTCGTACATGCAGCT
CTGATACCATCCTCAGAGCCATCAAGGAACTGACACAGGAAAACATCTCCTATACTTCCGACCAAGGCAAGACCTATGATTTCAATACTGCAGACAAACT
CAACACATTGCTTATAAACGCTTTGGTTTCTACAGGCGAGTTGAAGGAAATTGAGGAATACGATGTTGACTTTGACCATCAGTTTCTTGAAACGGAGAAG
TATGATGCAAAACCGACCTACAAAAAGTTCCTCGGCTACAGGCCTGGCGTATATGTTATCGGTGACAAGATAGTCTATATCGAGAACAGCGATGGCAACA
CGAATGTGCGTTTTCATCAGGCAGACACCCATAAGAGATTCTTCGCTCTTCTGGAATCCCAGAACATCCGTGTAAATCGCTTCAGGGCAGACTGCGGTTC
CTGCTCGAAGGAAATCGTCAGTGAGATAGAGAAGCATTGCAAACATTTCTACATCCGTGCCAACCGATGCAGTTCGCTCTACAATGACATCTTTGCTCTG
AGAGGATGGAAGACGGAGGAGATTAACGGCATCCAGTTCGAACTCAATTCCATTCTCGTTGAGAAATGGGAAGGCAAGTGCTATCGTCTTGTCATCCAGA
GACAAAGACGCAACAGTGGCGACCTTGACCTATGGGAAGGCGAATACACTTACCGTTGTATTCTGACCAACGATTACAAGTCATCGACAAGGGACATTGT
TGAATTCTACAATCTGCGTGGCGGCAAGGAACGTATCTTTGACGACATGAACAACGGATTCGGTTGGAGCAGGCTCCCCAAGTCATTCATGGCGGAGAAT
ACTGTCTTTCTTCTGCTTACTGCATTGATACACAATTTCTACAAGACCATCATGAGCAGGCTTGACACCAAGGCTTTTGGGCTCAAGAAAACGAGTCGCA
TAAAGGCTTTTGTCTTCAGATTCATCTCCGTACCTGCCAAGTGGATCATGACTGCAAGGCAATACGTGCTGAATATCTACACAGAGAACCGCGCTTATGC
AAAACCCTTCAAAACAGAATTCGGATAAGAATCCTTTCTTTCCGGTTAGAATCTGCGTATTTCCTCAAGTCGCATCGTGGGGTAAGGGGATGTTGGCTAC
ATATTGATGTTGTGCTGTTGCTTTTTACTGAAAGCTACTACTAACGACTCATAAATCTACCCTTAATCGTGTATTGGATGATAGTTGCGGATTTTAGG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1290 bp | 429 aa | 139 | 1428 | + | No |
Chemistry : DDE
ORF sequence :
MAKVQIKSEKLTPFGGIFSIMEKFDSMLSPVIDSTLGQRCRSIIGYQFSEIVRSLMSVYFCGGSCVEDVTSQLMRHLSYHPTLRTCSSDTILRAIKELTQ
ENISYTSDQGKTYDFNTADKLNTLLINALVSTGELKEIEEYDVDFDHQFLETEKYDAKPTYKKFLGYRPGVYVIGDKIVYIENSDGNTNVRFHQADTHKR
FFALLESQNIRVNRFRADCGSCSKEIVSEIEKHCKHFYIRANRCSSLYNDIFALRGWKTEEINGIQFELNSILVEKWEGKCYRLVIQRQRRNSGDLDLWE
GEYTYRCILTNDYKSSTRDIVEFYNLRGGKERIFDDMNNGFGWSRLPKSFMAENTVFLLLTALIHNFYKTIMSRLDTKAFGLKKTSRIKAFVFRFISVPA
KWIMTARQYVLNIYTENRAYAKPFKTEFG
ENISYTSDQGKTYDFNTADKLNTLLINALVSTGELKEIEEYDVDFDHQFLETEKYDAKPTYKKFLGYRPGVYVIGDKIVYIENSDGNTNVRFHQADTHKR
FFALLESQNIRVNRFRADCGSCSKEIVSEIEKHCKHFYIRANRCSSLYNDIFALRGWKTEEINGIQFELNSILVEKWEGKCYRLVIQRQRRNSGDLDLWE
GEYTYRCILTNDYKSSTRDIVEFYNLRGGKERIFDDMNNGFGWSRLPKSFMAENTVFLLLTALIHNFYKTIMSRLDTKAFGLKKTSRIKAFVFRFISVPA
KWIMTARQYVLNIYTENRAYAKPFKTEFG
Blast result :
Comments
IS612 is 96% aa similar to IS614.
References
1] Kato,N., Yamazoe,K., Han,C.G. and Ohtsubo,E. (2003) Antimicrob. Agents Chemother. 47 (3), 979-985.
2] Kato,N., Yamazoe,K., Han,C., Ohtsubo,E., Ara,T. and Mori,H. (2000) Direct Submission GenBank.
2] Kato,N., Yamazoe,K., Han,C., Ohtsubo,E., Ara,T. and Mori,H. (2000) Direct Submission GenBank.