IS609

  • Family IS200/IS605
  • Group IS605
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
BA000007 ND Escherichia coli
Escherichia coli W3110
Shigella flexneri
Escherichia coli O157:H7 EDL933
Shigella sonnei Ss046
Escherichia coli O157:H7
Shigella dysenteriae Sd197
Escherichia coli K-12 MG1655
DNA section
IS Length : 1748 bp

Ends


Left end : CCGGTGCGCCGTAAAACCCCGTCCTTCAGGGCGGGGATATACGGCGCGGTTTTCCACCTAACCAGGTGTTTGCTGTTGTTCAATGTATTGACGGATGGCG II struct. : Yes
Right end : CAGTCAGGCCGCCCGTTGAAGCAGGAACCCACCGAAATGATTCAGGCGACAGCCTGAACGTAGCAGGGATCCACGTCCTTCAGGGCTTGGAGGATGTCAA II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
ATACGCTTGGCCTGGTTTATCACATCAGTATGTCAA

DNA sequence

CCGGTGCGCCGTAAAACCCCGTCCTTCAGGGCGGGGATATACGGCGCGGTTTTCCACCTAACCAGGTGTTTGCTGTTGTTCAATGTATTGACGGATGGCG
GATATTGGCGCACCTCCGCAGCTACTGGCAAAATAGCCAGGACTCCACAAAACGCCTTTGTAGTAATACCTGACTGCAATATCTGGTCGATCTCGTCGCA
GTAACCTACCCGATACGCCTTTGAGGCTGTTTACCAGACTGGATATCGCCAGTTTGGGAGGATAGTTAATTAACAAATGGACGTGATCTGGTTCGCCATC
CATTTCAACCAGTTCAGCTTCAAAATCAGCACATACCTTTGAAAAGTAAGTGCGTAGTTTTTCTGTCGCGTCATGGTCAAAAATCTGGCGTCGGTATCTG
GTGACAAAGACCAGGTGAACATGCATCAGGAAAACACAATGCCTTCCACGCCGGATATCGGTTTCTTTTTTCACAGACCAAAGTATCATTTGGCCTGTGA
AACGACTACAGGCATTTAAATTCCAGTTAAGACCCGGTGGTCAACAGGAGCGTGAAATGAGGCGCTTCGCAGGCGCATGTCGTTTCGTTTTCAATCGTGC
TCTGGCGCTTCAGAATGAGAATCATGAGGCCGGTAATAAATACATCCCTTACGGGAAAATGGCTTCCTGGCTGGTTGAGTGGAAAAATGCCACTGAAACG
CAATGGCTTAAAGATGCCCCGTCACAGCCATTGCAACAGTCACTGAAAGACCTTGAGCGGGCTTACAAAAACTTCTTCCGGAAGCGGGCTGCTTTTCCCC
GATTCAAAAAGCGGGGACAGAATGATGCATTCCGCTACCCGCAGGGCGTTAAGCTCGATCAGGAAAACAGCCGTATTTTTCTGCCGAAACTTGGCTGGAT
GCGCTACCGGAATAGCCGTCAGGTCACGGGTGTTGTGAAAAATGTCACTGCCAGCCAGTCCTGCGGTAAGTGGTACATCAGTATTCAGACTGAAAATGAA
GTATCAACTCCGGTTCACCCTTCAGCATTAATGGTCGGACTGGATGCTGGCGTGGCTAAACTCGCCACGCTGTCAGATGGCACAGTCTTTGGACCTGTAA
ACAGTTTTCAGAAAAACCAGAAGACGCTGGCGAGACTTCAGCGACAGTTAAGCCGCAAGGTCAAATTCAGCAACAACTGGCAGAAGCAGAAACGCAAAAT
ACAGCGACTGCATTCCTGTATCGCAAATATCTGCAGGGACTACCTTCACAAAGTCACAACGACCGTCAGCAAAAACCACGCAATGATAGTCATTGAGGAT
TTGAAGGTCAGCAACATGTCAAAGTCAGCAGCGGGTACGGTCAGCCAGCCGGGGCGCAATGTCCGGGCAAAATCAGGTTTAAACCGTTCGATACTGGATC
AGGGCTGGTATGAAATGCGCCGCCAGCTTGAGTACAAGCAGCTCTGGCGTGGCGGTCAGGTGCTTGCTGTTCCGCCAGCGTACACAAGCCAGCGTTGCGC
GTGCTGTGGTCATACAGCGAAAGAAAATCGCCTGTCACAAAGTAAATTCAGATGCCAGGCATGTGGATATACAGCGAACGCTGATGTAAATGGCGCTCGT
AACATTTTAGCGGCGGGGCACGCCGTTCTTGCCTGTGGGGAGATGGTGCAGTCAGGCCGCCCGTTGAAGCAGGAACCCACCGAAATGATTCAGGCGACAG
CCTGAACGTAGCAGGGATCCACGTCCTTCAGGGCTTGGAGGATGTCAA
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
1149 bp143 aa441192-No
ORF function : Transposase
Chemistry : Y1

ORF sequence :

MILWSVKKETDIRRGRHCVFLMHVHLVFVTRYRRQIFDHDATEKLRTYFSKVCADFEAELVEMDGEPDHVHLLINYPPKLAISSLVNSLKGVSGRLLRRD
RPDIAVRYYYKGVLWSPGYFASSCGGAPISAIRQYIEQQQTPG

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
432 bp382 aa12601691+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MKRLQAFKFQLRPGGQQEREMRRFAGACRFVFNRALALQNENHEAGNKYIPYGKMASWLVEWKNATETQWLKDAPSQPLQQSLKDLERAYKNFFRKRAAF
PRFKKRGQNDAFRYPQGVKLDQENSRIFLPKLGWMRYRNSRQVTGVVKNVTASQSCGKWYISIQTENEVSTPVHPSALMVGLDAGVAKLATLSDGTVFGP
VNSFQKNQKTLARLQRQLSRKVKFSNNWQKQKRKIQRLHSCIANICRDYLHKVTTTVSKNHAMIVIEDLKVSNMSKSAAGTVSQPGRNVRAKSGLNRSIL
DQGWYEMRRQLEYKQLWRGGQVLAVPPAYTSQRCACCGHTAKENRLSQSKFRCQACGYTANADVNGARNILAAGHAVLACGEMVQSGRPLKQEPTEMIQA
TA

 

Blast result :
Comments
Copies in Escherichia coli O157:H7 (BA000007.2)(5283461-5281709, 3245985-3247737); in Escherichia coli O157:H7 EDL933(AE005174.2) (3315830-3317582, 5313447-5311695); in Shigella dysenteriae Sd197 (CP000034.1)(2395021-2396773); in Shigella sonnei Ss046(CP000038.1)(2086695-2088446, 3800087-3801839, 1812143-1813890); in Escherichia coli K-12 MG1655(U00096.2) (1502932-1501180, the transposase PEP1 is interrupted by a stop sodon), in Escherichia coli W3110 (AP009048.1)(1506622-1504870), in Shigella flexneri 2a str. 2457T (AE014073.1)(1751238-1752990), in Shigella flexneri 2a str. 301(AE005674.1)(1711648-1713400).
References
1] Hayashi,T. et al. (2001)DNA Res 8 (1), 47-52;