IS606
- Family IS200/IS605
- Group IS605
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
U95957 | ND | Helicobacter pylori | Helicobacter pylori |
DNA section
IS Length : 1967 bp
Ends
Left end : CCCACTAGCACGAAAAACTCCGTCCTTTAGGGCGGAGATGTAAGTGCATATCTGTTAGGTATTTGAATGTAATTCTACCTAATCCATTCGCTTTTTAGCG II struct. : Yes
Right end : AAATATCCATGCAGACTTTAAAGAACAAAGCCTTTCGTGTTAGTGTCCATTAGGGCGCTTTAGTTAGGAAGCTCCTTGCTTTAGCAAGGGGTGGTTTCAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
CAACACAATACCCT | TTAT | AATGTGAGCTATAGC | TCAc |
DNA sequence
CCCACTAGCACGAAAAACTCCGTCCTTTAGGGCGGAGATGTAAGTGCATATCTGTTAGGTATTTGAATGTAATTCTACCTAATCCATTCGCTTTTTAGCG
CATTCTATTAAAAATCAAAGTTAGCTAGTTAATGCGGTGTTTCTTGCTCTTGTATGTATTGCTTAATCATCTCTAAAGGCGCGCCCCCACAACTCCCAGC
GAAATAACTAGGCGACCATAAATGCTTCCCCCACAAACTAGCTTCAACGCTTTTGAAATGGTGTTGTCTAGTCAAACGACTGCTAACGCCTTTTAAAGAA
TTGACTAGCTTACTCACGCTCACTTTTGGAGGGTAGTTGATAAGCAAATGCACATGATCGCTCTCCCCATCAAATTCTACCAACTCGCTCTCAAAGTCCT
TACACACTTTGGCAAACACCGATCCTAAAAAATCTATCACTTCCTTGTTGAACGCTTTACGCCGGTATTTAGTGACAAATACCAAATGCGTATGCATTAA
AAAAACACAATGCCTTCCGTGTCTCATATCATCAATTTTTTTCATAGACCTATTTTAACTAAAAGAGGTTAAAATCCTTCTATGAAAGTCAATAAGGGTT
TTAAATTCCGCTTGTATCCCACTAAAGAACAACAAGATAAATTGCAACGCTGTTTTTTTGTCTATAATCAAGCTTATAATATTGGCTTGAATTTACTGCA
AGAGCAATATGAAACAAACAAAGATTCACCTCCCAAAGAAAGAAAGTGGAAAAAATCAAGCGAGTTAGACAAAGCGATTAAACACCACTTGAACGCTAGG
GGGTTAAGCTTTAGTAGTGTGATAGCCCAACAATCACGCATGAATGTTGAAAGGGCTTTAAAGGATGCTTTTAAAGTTAAAGATAGGGGATTTCCTAAAT
TCAAGAACTCTAAATCCGCTAAACAATCTTTTTCATGGAACAATCAAGGTTTCTCTATTAAAGATAGCGATGAGGAACGCTTTAAGATATTCACTTTAAT
GAAAATGCCCTTAATGATGCGCATGCATAGAGACTTCCCCCCTCATTCTAAAGTGAAACAAATCGTGATCTCTTGGAGCCATAGAAAATATTTTGTTAGC
TTTTGCGTGGAATACGAACAAGACATTACTCCCATCAAAAACCCTAAAAATGGTGTGGGGCTAGATTTGAATATCCTTGATATAGCTTGTTCTTGTGGCG
TGAATAATCACAAAAAACTAACGGACTTTAAGCAATACCCAACAGACATGAAAGAATTACTAGGGATAGAAATAGATGAAGAGTTGGACACTAAACGACT
CATCCCTACTTATTCCAAATTGTATTCTTTAAAAAAATACTCTAAAAAATTTAAAAGATTGCAAAGAAAACAAAGCCGTAGGGTGTTAAAGTCTAAACAA
AACAAAACCAAATTAGGAGGTAATTTTTACAAAACCCAAAAGAAATTAAACCAAGCCTTTGACAAGTCTAGTCATCAAAAAACAGACAGATACCATAAAA
TCACAAGCGAACTTTCAAAGCAATTTGAATTGGTAGTAGTTGAAGATTTGCAAGTAAAAAACATGACTAAAAGAGCTAAACTCAAAAACGTTAAACAAAA
GAGTGGGCTTAATCAATCTATCTTAAATACTTCATTCTATCAAATCATCTCTTTTTTAGACTACAAACAACAGCATAATGGCAAATTGTTAGTGAAAGTT
CCCCCACAATATACGAGTAAAACTTGCCATTGTTGTGGGAATATCAACCACAAGCTTAAATTAAATCATAGGCAGTATTGGTGTTTAGAATGCGGGTATA
GAGAACACAGAGACATCAACGCTGCGAACAATATTATAAGCAAAGGGTTAAGTCTTTTTGGGGTAGGAAATATCCATGCAGACTTTAAAGAACAAAGCCT
TTCGTGTTAGTGTCCATTAGGGCGCTTTAGTTAGGAAGCTCCTTGCTTTAGCAAGGGGTGGTTTCAC
CATTCTATTAAAAATCAAAGTTAGCTAGTTAATGCGGTGTTTCTTGCTCTTGTATGTATTGCTTAATCATCTCTAAAGGCGCGCCCCCACAACTCCCAGC
GAAATAACTAGGCGACCATAAATGCTTCCCCCACAAACTAGCTTCAACGCTTTTGAAATGGTGTTGTCTAGTCAAACGACTGCTAACGCCTTTTAAAGAA
TTGACTAGCTTACTCACGCTCACTTTTGGAGGGTAGTTGATAAGCAAATGCACATGATCGCTCTCCCCATCAAATTCTACCAACTCGCTCTCAAAGTCCT
TACACACTTTGGCAAACACCGATCCTAAAAAATCTATCACTTCCTTGTTGAACGCTTTACGCCGGTATTTAGTGACAAATACCAAATGCGTATGCATTAA
AAAAACACAATGCCTTCCGTGTCTCATATCATCAATTTTTTTCATAGACCTATTTTAACTAAAAGAGGTTAAAATCCTTCTATGAAAGTCAATAAGGGTT
TTAAATTCCGCTTGTATCCCACTAAAGAACAACAAGATAAATTGCAACGCTGTTTTTTTGTCTATAATCAAGCTTATAATATTGGCTTGAATTTACTGCA
AGAGCAATATGAAACAAACAAAGATTCACCTCCCAAAGAAAGAAAGTGGAAAAAATCAAGCGAGTTAGACAAAGCGATTAAACACCACTTGAACGCTAGG
GGGTTAAGCTTTAGTAGTGTGATAGCCCAACAATCACGCATGAATGTTGAAAGGGCTTTAAAGGATGCTTTTAAAGTTAAAGATAGGGGATTTCCTAAAT
TCAAGAACTCTAAATCCGCTAAACAATCTTTTTCATGGAACAATCAAGGTTTCTCTATTAAAGATAGCGATGAGGAACGCTTTAAGATATTCACTTTAAT
GAAAATGCCCTTAATGATGCGCATGCATAGAGACTTCCCCCCTCATTCTAAAGTGAAACAAATCGTGATCTCTTGGAGCCATAGAAAATATTTTGTTAGC
TTTTGCGTGGAATACGAACAAGACATTACTCCCATCAAAAACCCTAAAAATGGTGTGGGGCTAGATTTGAATATCCTTGATATAGCTTGTTCTTGTGGCG
TGAATAATCACAAAAAACTAACGGACTTTAAGCAATACCCAACAGACATGAAAGAATTACTAGGGATAGAAATAGATGAAGAGTTGGACACTAAACGACT
CATCCCTACTTATTCCAAATTGTATTCTTTAAAAAAATACTCTAAAAAATTTAAAAGATTGCAAAGAAAACAAAGCCGTAGGGTGTTAAAGTCTAAACAA
AACAAAACCAAATTAGGAGGTAATTTTTACAAAACCCAAAAGAAATTAAACCAAGCCTTTGACAAGTCTAGTCATCAAAAAACAGACAGATACCATAAAA
TCACAAGCGAACTTTCAAAGCAATTTGAATTGGTAGTAGTTGAAGATTTGCAAGTAAAAAACATGACTAAAAGAGCTAAACTCAAAAACGTTAAACAAAA
GAGTGGGCTTAATCAATCTATCTTAAATACTTCATTCTATCAAATCATCTCTTTTTTAGACTACAAACAACAGCATAATGGCAAATTGTTAGTGAAAGTT
CCCCCACAATATACGAGTAAAACTTGCCATTGTTGTGGGAATATCAACCACAAGCTTAAATTAAATCATAGGCAGTATTGGTGTTTAGAATGCGGGTATA
GAGAACACAGAGACATCAACGCTGCGAACAATATTATAAGCAAAGGGTTAAGTCTTTTTGGGGTAGGAAATATCCATGCAGACTTTAAAGAACAAAGCCT
TTCGTGTTAGTGTCCATTAGGGCGCTTTAGTTAGGAAGCTCCTTGCTTTAGCAAGGGGTGGTTTCAC
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
417 bp | 138 aa | 545 | 129 | - | No |
Chemistry : Y1
ORF sequence :
MKKIDDMRHGRHCVFLMHTHLVFVTKYRRKAFNKEVIDFLGSVFAKVCKDFESELVEFDGESDHVHLLINYPPKVSVSKLVNSLKGVSSRLTRQHHFKSV
EASLWGKHLWSPSYFAGSCGGAPLEMIKQYIQEQETPH
EASLWGKHLWSPSYFAGSCGGAPLEMIKQYIQEQETPH
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1329 bp | 442 aa | 582 | 1910 | + | No |
AG : TnpB
ORF sequence :
MKVNKGFKFRLYPTKEQQDKLQRCFFVYNQAYNIGLNLLQEQYETNKDSPPKERKWKKSSELDKAIKHHLNARGLSFSSVIAQQSRMNVERALKDAFKVK
DRGFPKFKNSKSAKQSFSWNNQGFSIKDSDEERFKIFTLMKMPLMMRMHRDFPPHSKVKQIVISWSHRKYFVSFCVEYEQDITPIKNPKNGVGLDLNILD
IACSCGVNNHKKLTDFKQYPTDMKELLGIEIDEELDTKRLIPTYSKLYSLKKYSKKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQK
TDRYHKITSELSKQFELVVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNTSFYQIISFLDYKQQHNGKLLVKVPPQYTSKTCHCCGNINHKLKLNHRQYW
CLECGYREHRDINAANNIISKGLSLFGVGNIHADFKEQSLSC
DRGFPKFKNSKSAKQSFSWNNQGFSIKDSDEERFKIFTLMKMPLMMRMHRDFPPHSKVKQIVISWSHRKYFVSFCVEYEQDITPIKNPKNGVGLDLNILD
IACSCGVNNHKKLTDFKQYPTDMKELLGIEIDEELDTKRLIPTYSKLYSLKKYSKKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQK
TDRYHKITSELSKQFELVVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNTSFYQIISFLDYKQQHNGKLLVKVPPQYTSKTCHCCGNINHKLKLNHRQYW
CLECGYREHRDINAANNIISKGLSLFGVGNIHADFKEQSLSC
Blast result :
Comments
The two ORFs are not on the same strand.
IS606 is 65% aa similar to IS1253B (ORF1) and 46% aa similar to IS1341 (ORF2).
File updated : January 19 2012.
IS606 is 65% aa similar to IS1253B (ORF1) and 46% aa similar to IS1341 (ORF2).
File updated : January 19 2012.
References
1] Kersulyte,D., Akopyants,N.S., Clifton,S.W., Roe,B.A. and Berg,D.E. (1998) Gene 223 (1-2), 175-186