IS606

  • Family IS200/IS605
  • Group IS605
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
U95957 ND Helicobacter pylori
Helicobacter pylori
DNA section
IS Length : 1967 bp

Ends


Left end : CCCACTAGCACGAAAAACTCCGTCCTTTAGGGCGGAGATGTAAGTGCATATCTGTTAGGTATTTGAATGTAATTCTACCTAATCCATTCGCTTTTTAGCG II struct. : Yes
Right end : AAATATCCATGCAGACTTTAAAGAACAAAGCCTTTCGTGTTAGTGTCCATTAGGGCGCTTTAGTTAGGAAGCTCCTTGCTTTAGCAAGGGGTGGTTTCAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
CAACACAATACCCTTTATAATGTGAGCTATAGCTCAc

DNA sequence

CCCACTAGCACGAAAAACTCCGTCCTTTAGGGCGGAGATGTAAGTGCATATCTGTTAGGTATTTGAATGTAATTCTACCTAATCCATTCGCTTTTTAGCG
CATTCTATTAAAAATCAAAGTTAGCTAGTTAATGCGGTGTTTCTTGCTCTTGTATGTATTGCTTAATCATCTCTAAAGGCGCGCCCCCACAACTCCCAGC
GAAATAACTAGGCGACCATAAATGCTTCCCCCACAAACTAGCTTCAACGCTTTTGAAATGGTGTTGTCTAGTCAAACGACTGCTAACGCCTTTTAAAGAA
TTGACTAGCTTACTCACGCTCACTTTTGGAGGGTAGTTGATAAGCAAATGCACATGATCGCTCTCCCCATCAAATTCTACCAACTCGCTCTCAAAGTCCT
TACACACTTTGGCAAACACCGATCCTAAAAAATCTATCACTTCCTTGTTGAACGCTTTACGCCGGTATTTAGTGACAAATACCAAATGCGTATGCATTAA
AAAAACACAATGCCTTCCGTGTCTCATATCATCAATTTTTTTCATAGACCTATTTTAACTAAAAGAGGTTAAAATCCTTCTATGAAAGTCAATAAGGGTT
TTAAATTCCGCTTGTATCCCACTAAAGAACAACAAGATAAATTGCAACGCTGTTTTTTTGTCTATAATCAAGCTTATAATATTGGCTTGAATTTACTGCA
AGAGCAATATGAAACAAACAAAGATTCACCTCCCAAAGAAAGAAAGTGGAAAAAATCAAGCGAGTTAGACAAAGCGATTAAACACCACTTGAACGCTAGG
GGGTTAAGCTTTAGTAGTGTGATAGCCCAACAATCACGCATGAATGTTGAAAGGGCTTTAAAGGATGCTTTTAAAGTTAAAGATAGGGGATTTCCTAAAT
TCAAGAACTCTAAATCCGCTAAACAATCTTTTTCATGGAACAATCAAGGTTTCTCTATTAAAGATAGCGATGAGGAACGCTTTAAGATATTCACTTTAAT
GAAAATGCCCTTAATGATGCGCATGCATAGAGACTTCCCCCCTCATTCTAAAGTGAAACAAATCGTGATCTCTTGGAGCCATAGAAAATATTTTGTTAGC
TTTTGCGTGGAATACGAACAAGACATTACTCCCATCAAAAACCCTAAAAATGGTGTGGGGCTAGATTTGAATATCCTTGATATAGCTTGTTCTTGTGGCG
TGAATAATCACAAAAAACTAACGGACTTTAAGCAATACCCAACAGACATGAAAGAATTACTAGGGATAGAAATAGATGAAGAGTTGGACACTAAACGACT
CATCCCTACTTATTCCAAATTGTATTCTTTAAAAAAATACTCTAAAAAATTTAAAAGATTGCAAAGAAAACAAAGCCGTAGGGTGTTAAAGTCTAAACAA
AACAAAACCAAATTAGGAGGTAATTTTTACAAAACCCAAAAGAAATTAAACCAAGCCTTTGACAAGTCTAGTCATCAAAAAACAGACAGATACCATAAAA
TCACAAGCGAACTTTCAAAGCAATTTGAATTGGTAGTAGTTGAAGATTTGCAAGTAAAAAACATGACTAAAAGAGCTAAACTCAAAAACGTTAAACAAAA
GAGTGGGCTTAATCAATCTATCTTAAATACTTCATTCTATCAAATCATCTCTTTTTTAGACTACAAACAACAGCATAATGGCAAATTGTTAGTGAAAGTT
CCCCCACAATATACGAGTAAAACTTGCCATTGTTGTGGGAATATCAACCACAAGCTTAAATTAAATCATAGGCAGTATTGGTGTTTAGAATGCGGGTATA
GAGAACACAGAGACATCAACGCTGCGAACAATATTATAAGCAAAGGGTTAAGTCTTTTTGGGGTAGGAAATATCCATGCAGACTTTAAAGAACAAAGCCT
TTCGTGTTAGTGTCCATTAGGGCGCTTTAGTTAGGAAGCTCCTTGCTTTAGCAAGGGGTGGTTTCAC
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
417 bp138 aa545129-No
ORF function : Transposase
Chemistry : Y1

ORF sequence :

MKKIDDMRHGRHCVFLMHTHLVFVTKYRRKAFNKEVIDFLGSVFAKVCKDFESELVEFDGESDHVHLLINYPPKVSVSKLVNSLKGVSSRLTRQHHFKSV
EASLWGKHLWSPSYFAGSCGGAPLEMIKQYIQEQETPH

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1329 bp442 aa5821910+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MKVNKGFKFRLYPTKEQQDKLQRCFFVYNQAYNIGLNLLQEQYETNKDSPPKERKWKKSSELDKAIKHHLNARGLSFSSVIAQQSRMNVERALKDAFKVK
DRGFPKFKNSKSAKQSFSWNNQGFSIKDSDEERFKIFTLMKMPLMMRMHRDFPPHSKVKQIVISWSHRKYFVSFCVEYEQDITPIKNPKNGVGLDLNILD
IACSCGVNNHKKLTDFKQYPTDMKELLGIEIDEELDTKRLIPTYSKLYSLKKYSKKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQK
TDRYHKITSELSKQFELVVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNTSFYQIISFLDYKQQHNGKLLVKVPPQYTSKTCHCCGNINHKLKLNHRQYW
CLECGYREHRDINAANNIISKGLSLFGVGNIHADFKEQSLSC

 

Blast result :
Comments
The two ORFs are not on the same strand.
IS606 is 65% aa similar to IS1253B (ORF1) and 46% aa similar to IS1341 (ORF2).

File updated : January 19 2012.
References
1] Kersulyte,D., Akopyants,N.S., Clifton,S.W., Roe,B.A. and Berg,D.E. (1998) Gene 223 (1-2), 175-186