IS240C

  • Family IS6
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
Y Bacillus cereus
Bacillus cereus CER484
DNA section
IS Length : 817 bp

Ends


IR Length : 16/17

IRL : GGTTCTGGTGCAAAAAATATAACACTTGTGCAATGAATCTGTAAATCCTG
IRR : GGTTCTGGTGCAAATAAAGGATACATTCCAAAAAACATTGATGAATGAAT

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

GGTTCTGGTGCAAAAAATATAACACTTGTGCAATGAATCTGTAAATCCTGGACATACTGATACTATTACTCTACAAAAGGGTGTGTGATCAGTATGAAAA
AGGAAACTTTGTTTAAATGGAAGCACTATCAGCCAGATATTATTCTATTAACTGTACGTTGGTACCTACGGTACAATCTTAGTTTTCGTGATTTGGTAGA
AATGATGGAGGAAAGAGGACTATCCTTGGCTCATACAACGATTATGCGGTGGGTCCATCAATATGGGCCGGAGTTAGATAAGCGAATTCGACGTCATCTC
AAACAAACGAATGACTCCTGGAGAGTAGATGAAACGTACATAAAAGTAAAAGGACAATGGATGTACCTATATCGTGCCGTTGATTCTGAAGGGAACACGA
TTGATTTTTATCTCAGTAAATCTAGAAATCATAAGGCTGCAAAGCGATTCTTCAAGAAGGCTTTGCGGTCTTTTCATGTTTCAAAACCTCGTGCAATTAC
AGTTGATAAAAATCCCGCCTATCCCATTGCTATCAGCGGGTTGAAGAAAGAGAAAAAAATGCCGTTAGGCATTCAAATCAGGCAGATAAAATATCTAAAT
AACATCGTAGAGCAAGACCATCGTTTCATTAAAAAACGTATACGCTCTATGTTAGGACTTAAATCTTTTCGCACAGTTACATTTATTCTTGCAGGAGTAG
AAGCCATGCATATGATACAAAAAGAACAGATTGATTTACGGGATCAGTCTGTTCAAAATCAAAAACAATTCATTCATCAATGTTTTTTGGAATGTATCCT
TTATTTGCACCAGAACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
724 bp241 aa94817+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKKETLFKWKHYQPDIILLTVRWYLRYNLSFRDLVEMMEERGLSLAHTTIMRWVHQYGPELDKRIRRHLKQTNDSWRVDETYIKVKGQWMYLYRAVDSEG
NTIDFYLSKSRNHKAAKRFFKKALRSFHVSKPRAITVDKNPAYPIAISGLKKEKKMPLGIQIRQIKYLNNIVEQDHRFIKKRIRSMLGLKSFRTVTFILA
GVEAMHMIQKEQIDLRDQSVQNQKQFIHQCFLECILYLHQN

 

Blast result :
Comments
IS240C and IS240A putative transposases are 74 % identical. Note that there is no stop codon terminating IS240C putative transposase. IS240C was found next to the new IS231Y element (Chen and Mahillon, 1997).
References
1] Chen, Y., and Mahillon, J. (1997) In preparation.