IS240C
- Family IS6
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
Y | Bacillus cereus | Bacillus cereus CER484 |
DNA section
IS Length : 817 bp
Ends
IR Length : 16/17
IRL : GGTTCTGGTGCAAAAAATATAACACTTGTGCAATGAATCTGTAAATCCTG
IRR : GGTTCTGGTGCAAATAAAGGATACATTCCAAAAAACATTGATGAATGAAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
GGTTCTGGTGCAAAAAATATAACACTTGTGCAATGAATCTGTAAATCCTGGACATACTGATACTATTACTCTACAAAAGGGTGTGTGATCAGTATGAAAA
AGGAAACTTTGTTTAAATGGAAGCACTATCAGCCAGATATTATTCTATTAACTGTACGTTGGTACCTACGGTACAATCTTAGTTTTCGTGATTTGGTAGA
AATGATGGAGGAAAGAGGACTATCCTTGGCTCATACAACGATTATGCGGTGGGTCCATCAATATGGGCCGGAGTTAGATAAGCGAATTCGACGTCATCTC
AAACAAACGAATGACTCCTGGAGAGTAGATGAAACGTACATAAAAGTAAAAGGACAATGGATGTACCTATATCGTGCCGTTGATTCTGAAGGGAACACGA
TTGATTTTTATCTCAGTAAATCTAGAAATCATAAGGCTGCAAAGCGATTCTTCAAGAAGGCTTTGCGGTCTTTTCATGTTTCAAAACCTCGTGCAATTAC
AGTTGATAAAAATCCCGCCTATCCCATTGCTATCAGCGGGTTGAAGAAAGAGAAAAAAATGCCGTTAGGCATTCAAATCAGGCAGATAAAATATCTAAAT
AACATCGTAGAGCAAGACCATCGTTTCATTAAAAAACGTATACGCTCTATGTTAGGACTTAAATCTTTTCGCACAGTTACATTTATTCTTGCAGGAGTAG
AAGCCATGCATATGATACAAAAAGAACAGATTGATTTACGGGATCAGTCTGTTCAAAATCAAAAACAATTCATTCATCAATGTTTTTTGGAATGTATCCT
TTATTTGCACCAGAACC
AGGAAACTTTGTTTAAATGGAAGCACTATCAGCCAGATATTATTCTATTAACTGTACGTTGGTACCTACGGTACAATCTTAGTTTTCGTGATTTGGTAGA
AATGATGGAGGAAAGAGGACTATCCTTGGCTCATACAACGATTATGCGGTGGGTCCATCAATATGGGCCGGAGTTAGATAAGCGAATTCGACGTCATCTC
AAACAAACGAATGACTCCTGGAGAGTAGATGAAACGTACATAAAAGTAAAAGGACAATGGATGTACCTATATCGTGCCGTTGATTCTGAAGGGAACACGA
TTGATTTTTATCTCAGTAAATCTAGAAATCATAAGGCTGCAAAGCGATTCTTCAAGAAGGCTTTGCGGTCTTTTCATGTTTCAAAACCTCGTGCAATTAC
AGTTGATAAAAATCCCGCCTATCCCATTGCTATCAGCGGGTTGAAGAAAGAGAAAAAAATGCCGTTAGGCATTCAAATCAGGCAGATAAAATATCTAAAT
AACATCGTAGAGCAAGACCATCGTTTCATTAAAAAACGTATACGCTCTATGTTAGGACTTAAATCTTTTCGCACAGTTACATTTATTCTTGCAGGAGTAG
AAGCCATGCATATGATACAAAAAGAACAGATTGATTTACGGGATCAGTCTGTTCAAAATCAAAAACAATTCATTCATCAATGTTTTTTGGAATGTATCCT
TTATTTGCACCAGAACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
724 bp | 241 aa | 94 | 817 | + | No |
Chemistry : DDE
ORF sequence :
MKKETLFKWKHYQPDIILLTVRWYLRYNLSFRDLVEMMEERGLSLAHTTIMRWVHQYGPELDKRIRRHLKQTNDSWRVDETYIKVKGQWMYLYRAVDSEG
NTIDFYLSKSRNHKAAKRFFKKALRSFHVSKPRAITVDKNPAYPIAISGLKKEKKMPLGIQIRQIKYLNNIVEQDHRFIKKRIRSMLGLKSFRTVTFILA
GVEAMHMIQKEQIDLRDQSVQNQKQFIHQCFLECILYLHQN
NTIDFYLSKSRNHKAAKRFFKKALRSFHVSKPRAITVDKNPAYPIAISGLKKEKKMPLGIQIRQIKYLNNIVEQDHRFIKKRIRSMLGLKSFRTVTFILA
GVEAMHMIQKEQIDLRDQSVQNQKQFIHQCFLECILYLHQN
Blast result :
Comments
IS240C and IS240A putative transposases are 74 % identical. Note that there is no stop codon terminating IS240C putative transposase. IS240C was found next to the new IS231Y element (Chen and Mahillon, 1997).
References
1] Chen, Y., and Mahillon, J. (1997) In preparation.