IS1H
- Family IS1
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
U15127 | ND | Escherichia coli | Escherichia coli ECOR50 |
DNA section
IS Length : 764 bp
Ends
IR Length : 21/23
IRL : GGTGATGCCTCCAATTAGTTGAATTAAGGATATAATACTCGCTTTTAAGG
IRR : GGTGATGACTCCAATTAGTAGAACATATATTTTCGATAAAAGCACCGATG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
GGTGATGCCTCCAATTAGTTGAATTAAGGATATAATACTCGCTTTTAAGGTTGTTTCATGGTCACAGTTAACCTTCATTGTCCCCGTTGCCAGTCCGTTC
AGGTTTACCGTCACGGGCAGAACCCCAAAAGACATGATCGATTCCGCGGCCGTGACTGTCACCGGGTATTTCAGCTCAGTTACTGTTACGAGCCCCGTAA
ACCAGGAGTTAAAGACCAAATCGCTGAAATGGCTTTCAACGGTGCCGGGGTTCGCTATACTGCCCGTACGCTGAAAATCGGCATTAATACAGTCATCCGA
ACTTTAAAAAACTCTCGCCACGAAAAATAACGTCATCCCCGGTCGCTCATGCTGATGTGGCACTCATCTGCGAACTTAGTCAGCAATGGAGCTTTGTCGG
CAGTAAAGCGCGACAGCACTGGCTCTGGTACGTGTACAACACGAAAACTGGTGGTGTTCTGGCCTACACTTTTGGCCCCCGGACTGATGAAACCTGTCGT
GAACTGCTGGCGCTGCTTACCCTTTTACCATCGGCATGTTGACCACTGACGAATGGGGTAGTTACGCTAGAGAGTTACCAAAGGAGAAGCATCTGACTGG
TAAGATTTTTACTCAGCACATTGAGCGTAACAATCTGACCCTGAGAACCCGAATCAAACGTCTGGCCCGCAGAACCATCTGTTTCTCGCGTTCTGTAGAA
CTTCATGAAAAAGTCATCGGTGCTTTTATCGAAAATATATGTTCTACTAATTGGAGTCATCACC
AGGTTTACCGTCACGGGCAGAACCCCAAAAGACATGATCGATTCCGCGGCCGTGACTGTCACCGGGTATTTCAGCTCAGTTACTGTTACGAGCCCCGTAA
ACCAGGAGTTAAAGACCAAATCGCTGAAATGGCTTTCAACGGTGCCGGGGTTCGCTATACTGCCCGTACGCTGAAAATCGGCATTAATACAGTCATCCGA
ACTTTAAAAAACTCTCGCCACGAAAAATAACGTCATCCCCGGTCGCTCATGCTGATGTGGCACTCATCTGCGAACTTAGTCAGCAATGGAGCTTTGTCGG
CAGTAAAGCGCGACAGCACTGGCTCTGGTACGTGTACAACACGAAAACTGGTGGTGTTCTGGCCTACACTTTTGGCCCCCGGACTGATGAAACCTGTCGT
GAACTGCTGGCGCTGCTTACCCTTTTACCATCGGCATGTTGACCACTGACGAATGGGGTAGTTACGCTAGAGAGTTACCAAAGGAGAAGCATCTGACTGG
TAAGATTTTTACTCAGCACATTGAGCGTAACAATCTGACCCTGAGAACCCGAATCAAACGTCTGGCCCGCAGAACCATCTGTTTCTCGCGTTCTGTAGAA
CTTCATGAAAAAGTCATCGGTGCTTTTATCGAAAATATATGTTCTACTAATTGGAGTCATCACC
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
273 bp | 90 aa | 58 | 330 | + | No |
Description : First part of the transposase
ORF sequence :
MVTVNLHCPRCQSVQVYRHGQNPKRHDRFRGRDCHRVFQLSYCYEPRKPGVKDQIAEMAFNGAGVRYTARTLKIGINTVIRTLKNSRHEK
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
465 bp | 154 aa | 288 | 752 | + | No |
Description : Second part of the transposase
ORF sequence :
YSHPNFKKLSPRKITSSPVAHADVALICELSQQWSFVGSKARQHWLWYVYNTKTGGVLAYTFGPRTDETCRELLALLTPFTIGMLTTDEWGSYARELPKE
KHLTGKIFTQHIERNNLTLRTRIKRLARRTICFSRSVELHEKVIGAFIENICS
KHLTGKIFTQHIERNNLTLRTRIKRLARRTICFSRSVELHEKVIGAFIENICS
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
695 bp | 230 aa | 58 | 752 | + | Yes |
Chemistry : DDE
ORF sequence :
MVTVNLHCPRCQSVQVYRHGQNPKRHDRFRGRDCHRVFQLSYCYEPRKPGVKDQIAEMAFNGAGVRYTARTLKIGINTVIRTLKKLSPRKITSSPVAHAD
VALICELSQQWSFVGSKARQHWLWYVYNTKTGGVLAYTFGPRTDETCRELLALLTPFTIGMLTTDEWGSYARELPKEKHLTGKIFTQHIERNNLTLRTRI
KRLARRTICFSRSVELHEKVIGAFIENICS
VALICELSQQWSFVGSKARQHWLWYVYNTKTGGVLAYTFGPRTDETCRELLALLTPFTIGMLTTDEWGSYARELPKEKHLTGKIFTQHIERNNLTLRTRI
KRLARRTICFSRSVELHEKVIGAFIENICS
Blast result :
Comments
IS1H (Zhao and Hill, 1995) is part of the RhsF element present in Escherichia coli ECOR50, but not in K12. The Rhs elements comprise a family of large accessory sequences found in certain E. coli strains. Their role and function remain unknown. There is a nt apparently "missing" at position 521 of IS1H. For comparison purposes, this shift has been ignored: thus insB ORF is a fusion between two ORFs: 72 aa (306-521) and 75 aa (521-750). This feature remains to be confirmed. Note that on the virulence plasmid pO157 of Escherichia coli O157:H7 strain EDL933, 304 bp downstream of the espP gene (encoding an extracellular serine protease shown to cleave the human coagulation factor V, therefore contributing to the mucosal haemorrhage observed in patients with haemorrhagic colitis), a 491-bp inactive IS1-like element was shown to display 92 % identity with IS1H (Brunder et al., 1997, Accession number: X97542).
References
1] Zhao, S., and Hill, C.W. (1995) J. Bacteriol. 177, 1393-1398
2] Brunder, W., Schmidt, H., and Karch, H. (1997) Mol. Microbiol. 24, 767-778.
2] Brunder, W., Schmidt, H., and Karch, H. (1997) Mol. Microbiol. 24, 767-778.