IS1411
- Family ISL3
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
M57500 | Y | Pseudomonas sp. | Pseudomonas putida Pseudomonas sp. EST1001 |
DNA section
IS Length : 1419 bp
Ends
IR Length : 24
IRL : GGCTCTTCGCATTTAAGGGTGTAGAAAAAATCTGACCGGCTGGAAAAGGA
IRR : GGCTCTTCGCATTTAAGGGTGTAGCTGATTTCTAAACCCTCCTGACTTCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GTCGTTGTGA | TGTATTCC | NNNNNNNNNN | 8 |
DNA sequence
GGCTCTTCGCATTTAAGGGTGTAGAAAAAATCTGACCGGCTGGAAAAGGAGTCGAGGATCTTAGAAAATGTAAGCTCTCACACCAACAAAAACTAAGCCC
CCGACGTGAACAATCTTACCTTTTCTAGCCCTGATCTTTCCAGCTTTTGCCAACTGAATAACCTCGGCCTGACTGCCACTGGACAACATCTTTGTGCAGA
GCGCGCCGTCATCGAATGTCGTTTAACCAAAGCACCCGAGCCATGCCCCAAGTGCGGGGCTGCTGGTGTTTCACGCGGTACTGTCGATAGGCATCTTGCT
CACACACCTTACGGACAACGACCAACCAGATTGCTGCTGCGTATCCGTCGCTGGCGTTGTGCTTGCGGCTGTTTCTGGCATGAAGATACAAACAGTGCAG
CACCTCCACGTTCAAAGCTTTCATATGGGGCGATACGCTGGGCATTAGCTGCCATCGTGCTGGATCATCTGTCGGTATCTCGTGTTGCGAGCCAGCTTGA
TGTTGCATGGCACACCGCTAATAATGCCATTATCAACGAAGGACGGCGCCTGCTTTTTAATGACTCGACACGTTTTGACGGTGTGACCGTGCTGGGCGTG
GATGAGCATGTTTGGCGACATACACGCTGTGGTGACAAGTACGTCACCATCGTGGTTGACCTTACGCCCGTGCGTAACAAAAACGGGCCGGCCCGCTTGC
TCGATGTGCTGGAAGGCCGCTCCAAACAAGCCTTTAAGCAATGGCTACAGAGTCGCCCCAAATCGTGGCGTGACCAGATCGAAAGCATTGCCATGGACGG
TTTTACGGGGTTTAAATCTGCAGCGCAAGAAGCCCTGCCTCAAGCCCAAACCGTGCTGGATCCTTTCCATGTCGTGCGCTGGGCAAGCAACATGCTGGAT
GAATGCCGCCGGCGTGTGCAACACGACATCCTGGGCCGCAGAGGGCGTAAAAATGACCCGCTCTACAAAAGCCGTCGAACGCTACTGACTCGGATCAGCT
ACCTGTCTGACGCCAACAAAAAGCAACTGTTCCAGCTGTTTGCAGATGAGCACCACCTCGAAGTGGATTGCACCTGGAGCATGTACCAACGGGTGGTCAG
CGCCTACAACGAGCCGGATCGAAAACGCGGTAAAAAACTCATGGAAGAGGTCATAAATATCATTACAGTTAGCGACTTGCCCAAAGCGCTCATCGAGGTG
AAAGGCTTGGGGGAAACGCTGAAAAAATACGCTGAGAGCATCCTTGCCTACTTCGACCGGCCAGGAACCAGCAACGGTCCAACAGAAGCTATCAACGGGC
GACTTGAGCACTTACGAGGTACCGCCTTGGGCTTTAGAAATTTAACCAATTACATAGCCAGGTGCTTGCTGAAGTCAGGAGGGTTTAGAAATCAGCTACA
CCCTTAAATGCGAAGAGCC
CCGACGTGAACAATCTTACCTTTTCTAGCCCTGATCTTTCCAGCTTTTGCCAACTGAATAACCTCGGCCTGACTGCCACTGGACAACATCTTTGTGCAGA
GCGCGCCGTCATCGAATGTCGTTTAACCAAAGCACCCGAGCCATGCCCCAAGTGCGGGGCTGCTGGTGTTTCACGCGGTACTGTCGATAGGCATCTTGCT
CACACACCTTACGGACAACGACCAACCAGATTGCTGCTGCGTATCCGTCGCTGGCGTTGTGCTTGCGGCTGTTTCTGGCATGAAGATACAAACAGTGCAG
CACCTCCACGTTCAAAGCTTTCATATGGGGCGATACGCTGGGCATTAGCTGCCATCGTGCTGGATCATCTGTCGGTATCTCGTGTTGCGAGCCAGCTTGA
TGTTGCATGGCACACCGCTAATAATGCCATTATCAACGAAGGACGGCGCCTGCTTTTTAATGACTCGACACGTTTTGACGGTGTGACCGTGCTGGGCGTG
GATGAGCATGTTTGGCGACATACACGCTGTGGTGACAAGTACGTCACCATCGTGGTTGACCTTACGCCCGTGCGTAACAAAAACGGGCCGGCCCGCTTGC
TCGATGTGCTGGAAGGCCGCTCCAAACAAGCCTTTAAGCAATGGCTACAGAGTCGCCCCAAATCGTGGCGTGACCAGATCGAAAGCATTGCCATGGACGG
TTTTACGGGGTTTAAATCTGCAGCGCAAGAAGCCCTGCCTCAAGCCCAAACCGTGCTGGATCCTTTCCATGTCGTGCGCTGGGCAAGCAACATGCTGGAT
GAATGCCGCCGGCGTGTGCAACACGACATCCTGGGCCGCAGAGGGCGTAAAAATGACCCGCTCTACAAAAGCCGTCGAACGCTACTGACTCGGATCAGCT
ACCTGTCTGACGCCAACAAAAAGCAACTGTTCCAGCTGTTTGCAGATGAGCACCACCTCGAAGTGGATTGCACCTGGAGCATGTACCAACGGGTGGTCAG
CGCCTACAACGAGCCGGATCGAAAACGCGGTAAAAAACTCATGGAAGAGGTCATAAATATCATTACAGTTAGCGACTTGCCCAAAGCGCTCATCGAGGTG
AAAGGCTTGGGGGAAACGCTGAAAAAATACGCTGAGAGCATCCTTGCCTACTTCGACCGGCCAGGAACCAGCAACGGTCCAACAGAAGCTATCAACGGGC
GACTTGAGCACTTACGAGGTACCGCCTTGGGCTTTAGAAATTTAACCAATTACATAGCCAGGTGCTTGCTGAAGTCAGGAGGGTTTAGAAATCAGCTACA
CCCTTAAATGCGAAGAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1301 bp | 433 aa | 107 | 1407 | + | No |
Chemistry : Unknow
ORF sequence :
MNNLTFSSPDLSSFCQLNNLGLTATGQHLCAERAVIECRLTKAPEPCPKCGAAGVSRGTVDRHLAHTPYGQRPTRLLLRIRRWRCACGCFWHEDTNSAAP
PRSKLSYGAIRWALAAIVLDHLSVSRVASQLDVAWHTANNAIINEGRRLLFNDSTRFDGVTVLGVDEHVWRHTRCGDKYVTIVVDLTPVRNKNGPARLLD
VLEGRSKQAFKQWLQSRPKSWRDQIESIAMDGFTGFKSAAQEALPQAQTVLDPFHVVRWASNMLDECRRRVQHDILGRRGRKNDPLYKSRRTLLTRISYL
SDANKKQLFQLFADEHHLEVDCTWSMYQRVVSAYNEPDRKRGKKLMEEVINIITVSDLPKALIEVKGLGETLKKYAESILAYFDRPGTSNGPTEAINGRL
EHLRGTALGFRNLTNYIARCLLKSGGFRNQLHP
PRSKLSYGAIRWALAAIVLDHLSVSRVASQLDVAWHTANNAIINEGRRLLFNDSTRFDGVTVLGVDEHVWRHTRCGDKYVTIVVDLTPVRNKNGPARLLD
VLEGRSKQAFKQWLQSRPKSWRDQIESIAMDGFTGFKSAAQEALPQAQTVLDPFHVVRWASNMLDECRRRVQHDILGRRGRKNDPLYKSRRTLLTRISYL
SDANKKQLFQLFADEHHLEVDCTWSMYQRVVSAYNEPDRKRGKKLMEEVINIITVSDLPKALIEVKGLGETLKKYAESILAYFDRPGTSNGPTEAINGRL
EHLRGTALGFRNLTNYIARCLLKSGGFRNQLHP
Blast result :
Comments
IS1411 activates transcription of the pheBA operon by an outward directed promoter in the left end.IS1411 forms circular molecules which migrate at the expected position in agarose gel electrophoresis. One cloned junction showed 5bp from outside IRL separating the two ends.
References
1] Kallastu, A., Horak, R, and Kivisaar, M. (1998) J. Bact. 180, 5306-5312.