IS1341

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
D38778 ND Thermophilic bacterium
Thermophilic bacterium PS3
DNA section
IS Length : 1353 bp

Ends


Left end : ACCGTTCGAGGCGGATTTCTCTGTCTTGCCTCATCTATCATTTTGGGCTTCAAAGTTATTTTTAACATCTTTCCGAAAGAAGTCTCCCACTTCTAAACGA II struct. : No
Right end : GAATGTGGATTCGAGAGCGACAGGGACGTCAATGCGGCCATCAATATCAAACATGAGGGCATGAAACGATTGGCGATCGTCTAATTTGTCCTCGAACCGT II struct. : No

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site

DNA sequence

ACCGTTCGAGGCGGATTTCTCTGTCTTGCCTCATCTATCATTTTGGGCTTCAAAGTTATTTTTAACATCTTTCCGAAAGAAGTCTCCCACTTCTAAACGA
AGTGAAAGTGGGAGATGAAATTTCGGTTAGGTATAGCCTAAAATTGTCTCTTTTTTGTGTATTACAATATAATCAGTTATAGAAAAAATATATCGAAAAT
CAAGGTATGAAGTGATGTGGTGTCGATATGGCAAACAAAGCCTATCAGTTCCGTCTATACCCAACAAAAGAACAAGAACAACTGCTCGCCAAAACCTTCG
GTTGTGTCCGTTTCGTGTATAACAAAATGCTTGAAGAGCGCATACAAATGTTTGAAAAGTTCAAGGACGATCAAGAATCCTTGAAACAGCAAACATGTCC
GACCCCTGCCAAGTACAAAAAGGAGTTTCCTTGGCTAAAAGAAGTGGACAGCCTTGCGCTGGCAAACGCCCAATTGAATTTGCAGAAAGCATTTCAACAC
TTCTTTTCTGGCCGCGCTGGATTTCCCAAGTTCAAAAACCGCAAGGCGAAACAGTCGTACACCACAAATATGGTAAATGGCAACATCAAGCTTTCAGATG
GCTATATCAAGCTGCCCAAACTGAAATGGATCAAGCTCAAGCAACATCGGGAGATCCCTGCCCACCATATCATCAAGTCTTGTACGATCACGAAAACCAA
AACAGGAAAATACTATATTTCTATTCTCACAGAGTACGAACATCAACCTGCCCCAAAAGAAGTACAAACGGTTGTTGGGCTTGATTTTTCCATGAGTACG
TTGTATGTCGATAGCGAGGGTAAGAGAGCCAATTATCCTCGATTCTATCGCAAAGCATTGGAAACATTAGCGAAAGAACAGCGTAAATGGTCTCGTAAAA
AGAAAGGCTCGAATCGTTGGCACAAACAGCGTCTGAAAGTAGCGAAGCTGCATGAGAAAATTGCCAACCAGCGCAAGGACTTTCTGCATAAGGAGTCGCA
CAAATTAGCGAAACGGTATGATTGCGTGGTCATCGAAGACCTCAACATGAAAGGGATGTCACAAGCCCTCCATTTCGGTCAAGGCGTTCATGACAACGGC
TGGGGCATGTTCACCACTTTCCTTCAGTACAAGCTGGTCGAACAGGGGAAGAAGCTGATCAAAATCGACAAATGGTTCCCCTCGTCCAAAACGTGTTCGT
GTTGCGGTCGAGTCAAGGAGTCTCTATCGCTTTCTGAACGGACATTCCGTTGTGAATGTGGATTCGAGAGCGACAGGGACGTCAATGCGGCCATCAATAT
CAAACATGAGGGCATGAAACGATTGGCGATCGTCTAATTTGTCCTCGAACCGT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1110 bp369 aa2281337+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MANKAYQFRLYPTKEQEQLLAKTFGCVRFVYNKMLEERIQMFEKFKDDQESLKQQTCPTPAKYKKEFPWLKEVDSLALANAQLNLQKAFQHFFSGRAGFP
KFKNRKAKQSYTTNMVNGNIKLSDGYIKLPKLKWIKLKQHREIPAHHIIKSCTITKTKTGKYYISILTEYEHQPAPKEVQTVVGLDFSMSTLYVDSEGKR
ANYPRFYRKALETLAKEQRKWSRKKKGSNRWHKQRLKVAKLHEKIANQRKDFLHKESHKLAKRYDCVVIEDLNMKGMSQALHFGQGVHDNGWGMFTTFLQ
YKLVEQGKKLIKIDKWFPSSKTCSCCGRVKESLSLSERTFRCECGFESDRDVNAAINIKHEGMKRLAIV

 

Blast result :
Comments
IS1341 has been found 5' to the acp (alanine carrier protein) gene, and is present in at least three copies in the chromosome of the PS3 bacterium. In Escherichia coli, IS1341 is involved in the acp expression. The limits of IS1341 should be confirmed !
References
1] Murai, N., Kamata, H., Nagashima, Y., Yagisawa, H., and Hirata, H. (1995) Gene 163, 103-107.