IS1341
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
D38778 | ND | Thermophilic bacterium | Thermophilic bacterium PS3 |
DNA section
IS Length : 1353 bp
Ends
Left end : ACCGTTCGAGGCGGATTTCTCTGTCTTGCCTCATCTATCATTTTGGGCTTCAAAGTTATTTTTAACATCTTTCCGAAAGAAGTCTCCCACTTCTAAACGA II struct. : No
Right end : GAATGTGGATTCGAGAGCGACAGGGACGTCAATGCGGCCATCAATATCAAACATGAGGGCATGAAACGATTGGCGATCGTCTAATTTGTCCTCGAACCGT II struct. : No
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|
DNA sequence
ACCGTTCGAGGCGGATTTCTCTGTCTTGCCTCATCTATCATTTTGGGCTTCAAAGTTATTTTTAACATCTTTCCGAAAGAAGTCTCCCACTTCTAAACGA
AGTGAAAGTGGGAGATGAAATTTCGGTTAGGTATAGCCTAAAATTGTCTCTTTTTTGTGTATTACAATATAATCAGTTATAGAAAAAATATATCGAAAAT
CAAGGTATGAAGTGATGTGGTGTCGATATGGCAAACAAAGCCTATCAGTTCCGTCTATACCCAACAAAAGAACAAGAACAACTGCTCGCCAAAACCTTCG
GTTGTGTCCGTTTCGTGTATAACAAAATGCTTGAAGAGCGCATACAAATGTTTGAAAAGTTCAAGGACGATCAAGAATCCTTGAAACAGCAAACATGTCC
GACCCCTGCCAAGTACAAAAAGGAGTTTCCTTGGCTAAAAGAAGTGGACAGCCTTGCGCTGGCAAACGCCCAATTGAATTTGCAGAAAGCATTTCAACAC
TTCTTTTCTGGCCGCGCTGGATTTCCCAAGTTCAAAAACCGCAAGGCGAAACAGTCGTACACCACAAATATGGTAAATGGCAACATCAAGCTTTCAGATG
GCTATATCAAGCTGCCCAAACTGAAATGGATCAAGCTCAAGCAACATCGGGAGATCCCTGCCCACCATATCATCAAGTCTTGTACGATCACGAAAACCAA
AACAGGAAAATACTATATTTCTATTCTCACAGAGTACGAACATCAACCTGCCCCAAAAGAAGTACAAACGGTTGTTGGGCTTGATTTTTCCATGAGTACG
TTGTATGTCGATAGCGAGGGTAAGAGAGCCAATTATCCTCGATTCTATCGCAAAGCATTGGAAACATTAGCGAAAGAACAGCGTAAATGGTCTCGTAAAA
AGAAAGGCTCGAATCGTTGGCACAAACAGCGTCTGAAAGTAGCGAAGCTGCATGAGAAAATTGCCAACCAGCGCAAGGACTTTCTGCATAAGGAGTCGCA
CAAATTAGCGAAACGGTATGATTGCGTGGTCATCGAAGACCTCAACATGAAAGGGATGTCACAAGCCCTCCATTTCGGTCAAGGCGTTCATGACAACGGC
TGGGGCATGTTCACCACTTTCCTTCAGTACAAGCTGGTCGAACAGGGGAAGAAGCTGATCAAAATCGACAAATGGTTCCCCTCGTCCAAAACGTGTTCGT
GTTGCGGTCGAGTCAAGGAGTCTCTATCGCTTTCTGAACGGACATTCCGTTGTGAATGTGGATTCGAGAGCGACAGGGACGTCAATGCGGCCATCAATAT
CAAACATGAGGGCATGAAACGATTGGCGATCGTCTAATTTGTCCTCGAACCGT
AGTGAAAGTGGGAGATGAAATTTCGGTTAGGTATAGCCTAAAATTGTCTCTTTTTTGTGTATTACAATATAATCAGTTATAGAAAAAATATATCGAAAAT
CAAGGTATGAAGTGATGTGGTGTCGATATGGCAAACAAAGCCTATCAGTTCCGTCTATACCCAACAAAAGAACAAGAACAACTGCTCGCCAAAACCTTCG
GTTGTGTCCGTTTCGTGTATAACAAAATGCTTGAAGAGCGCATACAAATGTTTGAAAAGTTCAAGGACGATCAAGAATCCTTGAAACAGCAAACATGTCC
GACCCCTGCCAAGTACAAAAAGGAGTTTCCTTGGCTAAAAGAAGTGGACAGCCTTGCGCTGGCAAACGCCCAATTGAATTTGCAGAAAGCATTTCAACAC
TTCTTTTCTGGCCGCGCTGGATTTCCCAAGTTCAAAAACCGCAAGGCGAAACAGTCGTACACCACAAATATGGTAAATGGCAACATCAAGCTTTCAGATG
GCTATATCAAGCTGCCCAAACTGAAATGGATCAAGCTCAAGCAACATCGGGAGATCCCTGCCCACCATATCATCAAGTCTTGTACGATCACGAAAACCAA
AACAGGAAAATACTATATTTCTATTCTCACAGAGTACGAACATCAACCTGCCCCAAAAGAAGTACAAACGGTTGTTGGGCTTGATTTTTCCATGAGTACG
TTGTATGTCGATAGCGAGGGTAAGAGAGCCAATTATCCTCGATTCTATCGCAAAGCATTGGAAACATTAGCGAAAGAACAGCGTAAATGGTCTCGTAAAA
AGAAAGGCTCGAATCGTTGGCACAAACAGCGTCTGAAAGTAGCGAAGCTGCATGAGAAAATTGCCAACCAGCGCAAGGACTTTCTGCATAAGGAGTCGCA
CAAATTAGCGAAACGGTATGATTGCGTGGTCATCGAAGACCTCAACATGAAAGGGATGTCACAAGCCCTCCATTTCGGTCAAGGCGTTCATGACAACGGC
TGGGGCATGTTCACCACTTTCCTTCAGTACAAGCTGGTCGAACAGGGGAAGAAGCTGATCAAAATCGACAAATGGTTCCCCTCGTCCAAAACGTGTTCGT
GTTGCGGTCGAGTCAAGGAGTCTCTATCGCTTTCTGAACGGACATTCCGTTGTGAATGTGGATTCGAGAGCGACAGGGACGTCAATGCGGCCATCAATAT
CAAACATGAGGGCATGAAACGATTGGCGATCGTCTAATTTGTCCTCGAACCGT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1110 bp | 369 aa | 228 | 1337 | + | No |
AG : TnpB
ORF sequence :
MANKAYQFRLYPTKEQEQLLAKTFGCVRFVYNKMLEERIQMFEKFKDDQESLKQQTCPTPAKYKKEFPWLKEVDSLALANAQLNLQKAFQHFFSGRAGFP
KFKNRKAKQSYTTNMVNGNIKLSDGYIKLPKLKWIKLKQHREIPAHHIIKSCTITKTKTGKYYISILTEYEHQPAPKEVQTVVGLDFSMSTLYVDSEGKR
ANYPRFYRKALETLAKEQRKWSRKKKGSNRWHKQRLKVAKLHEKIANQRKDFLHKESHKLAKRYDCVVIEDLNMKGMSQALHFGQGVHDNGWGMFTTFLQ
YKLVEQGKKLIKIDKWFPSSKTCSCCGRVKESLSLSERTFRCECGFESDRDVNAAINIKHEGMKRLAIV
KFKNRKAKQSYTTNMVNGNIKLSDGYIKLPKLKWIKLKQHREIPAHHIIKSCTITKTKTGKYYISILTEYEHQPAPKEVQTVVGLDFSMSTLYVDSEGKR
ANYPRFYRKALETLAKEQRKWSRKKKGSNRWHKQRLKVAKLHEKIANQRKDFLHKESHKLAKRYDCVVIEDLNMKGMSQALHFGQGVHDNGWGMFTTFLQ
YKLVEQGKKLIKIDKWFPSSKTCSCCGRVKESLSLSERTFRCECGFESDRDVNAAINIKHEGMKRLAIV
Blast result :
Comments
IS1341 has been found 5' to the acp (alanine carrier protein) gene, and is present in at least three copies in the chromosome of the PS3 bacterium. In Escherichia coli, IS1341 is involved in the acp expression. The limits of IS1341 should be confirmed !
References
1] Murai, N., Kamata, H., Nagashima, Y., Yagisawa, H., and Hirata, H. (1995) Gene 163, 103-107.