IS1187

  • Family IS982
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
Y18979 ND Bacteroides fragilis
Bacteroides fragilis cfiA-positive
DNA section
IS Length : 1028 bp

Ends


IR Length : 21/22

IRL : ACCCGTTGGCGGAATTAATTTAAGTTGATAAATATGAGTAAAAAGTTGTA
IRR : ACCTGTTGGCGGAATTAATTTAGTGCATACTTAATTCTGCCAATGGGCTT

Insertion site


Left flankDirect repeatRight flankDR Length
CATAAGTTATAAATGTTAGTTTGAATA7

DNA sequence

ACCCGTTGGCGGAATTAATTTAAGTTGATAAATATGAGTAAAAAGTTGTACATGTCGCTGATTTTTAGTAACTTAGTGGTGATTAAAACATTAAGTTCAA
ACCATCGTATGTACAACCTTTATGCAAAATTCGTCAAAATACTTGAGATATGCAAGCAATTCTCTGAAAATCTCGTCAATGATTCGGGTAATGTTCCACG
TCGTGGTCCTGTTCCCAAGTTTTCGGATTTGGAAGTGGTGGCGCTATCCCTGACGGCAGAGACCGAGAGCATTGATAGTGAGAAGTGGTTGTTCGACTAT
AAATTGCAAGAATACAAGGACAGCATTCCCAATCTCATATCAAGGAGACAGTTCAATGACCGCAGGAAGAAAACGTCAGGCCTGTGTGAGGAACTGCGCA
AGCGGATTGCCATGGAAATGGATGGCGGAGAGGAACAATTCTTTGTTGACTCCAAGCCGATAGAGGTCTGTAGGGTTGCAAGAGGAAAACGTTGCAAGAT
GGGGCGTGCCGGCAATTTCTCGCAAGCTCCCGACTTCGGCTTCTGTGCTTCGCAGAACACGTATTATTTTGGTTATAAGTTACACGCTCTCTGTGGGTTA
AGTGGAGTTATCCATTCCTATGATCTGTCAAAGGCAAGTGTGGCTGACCTCCATTATATGAAGGATGTAAAACATACTTATCACGACTGTAGCATCTATG
GTGACAAAGGGTATATTGGAGCTGACGTACAGCTTGACTTGTTCGAAACCGCACACATAAGACTGGAGTGTCCGTATCGGCTCAACCAAAAGGATTGGAA
ACCGACATTCATTCCGTTTGCAAAGGCAAGAAAGAGGATTGAGACAATATTCTCACAACTTACAGACCAGTTCTTGGTCATCAGGAACTACGCGAAAATA
ACGAATGGTTTGTTTGCCAGAATCATTGGCAAAATTAGTGCACTTACCATTCTGCAATACGTAAACTTCATTAACGACAAGCCCATTGGCAGAATTAAGT
ATGCACTAAATTAATTCCGCCAACAGGT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
981 bp326 aa341014+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSKKLYMSLIFSNLVVIKTLSSNHRMYNLYAKFVKILEICKQFSENLVNDSGNVPRRGPVPKFSDLEVVALSLTAETESIDSEKWLFDYKLQEYKDSIPN
LISRRQFNDRRKKTSGLCEELRKRIAMEMDGGEEQFFVDSKPIEVCRVARGKRCKMGRAGNFSQAPDFGFCASQNTYYFGYKLHALCGLSGVIHSYDLSK
ASVADLHYMKDVKHTYHDCSIYGDKGYIGADVQLDLFETAHIRLECPYRLNQKDWKPTFIPFAKARKRIETIFSQLTDQFLVIRNYAKITNGLFARIIGK
ISALTILQYVNFINDKPIGRIKYALN

 

Blast result :
Comments
IS1187 is 66% aa similar to ISRa1.
References
1] Podglajen,I.(1999) Direct Submission GenBank.