IS1187
- Family IS982
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
Y18979 | ND | Bacteroides fragilis | Bacteroides fragilis cfiA-positive |
DNA section
IS Length : 1028 bp
Ends
IR Length : 21/22
IRL : ACCCGTTGGCGGAATTAATTTAAGTTGATAAATATGAGTAAAAAGTTGTA
IRR : ACCTGTTGGCGGAATTAATTTAGTGCATACTTAATTCTGCCAATGGGCTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CATAAGTTAT | AAATGTT | AGTTTGAATA | 7 |
DNA sequence
ACCCGTTGGCGGAATTAATTTAAGTTGATAAATATGAGTAAAAAGTTGTACATGTCGCTGATTTTTAGTAACTTAGTGGTGATTAAAACATTAAGTTCAA
ACCATCGTATGTACAACCTTTATGCAAAATTCGTCAAAATACTTGAGATATGCAAGCAATTCTCTGAAAATCTCGTCAATGATTCGGGTAATGTTCCACG
TCGTGGTCCTGTTCCCAAGTTTTCGGATTTGGAAGTGGTGGCGCTATCCCTGACGGCAGAGACCGAGAGCATTGATAGTGAGAAGTGGTTGTTCGACTAT
AAATTGCAAGAATACAAGGACAGCATTCCCAATCTCATATCAAGGAGACAGTTCAATGACCGCAGGAAGAAAACGTCAGGCCTGTGTGAGGAACTGCGCA
AGCGGATTGCCATGGAAATGGATGGCGGAGAGGAACAATTCTTTGTTGACTCCAAGCCGATAGAGGTCTGTAGGGTTGCAAGAGGAAAACGTTGCAAGAT
GGGGCGTGCCGGCAATTTCTCGCAAGCTCCCGACTTCGGCTTCTGTGCTTCGCAGAACACGTATTATTTTGGTTATAAGTTACACGCTCTCTGTGGGTTA
AGTGGAGTTATCCATTCCTATGATCTGTCAAAGGCAAGTGTGGCTGACCTCCATTATATGAAGGATGTAAAACATACTTATCACGACTGTAGCATCTATG
GTGACAAAGGGTATATTGGAGCTGACGTACAGCTTGACTTGTTCGAAACCGCACACATAAGACTGGAGTGTCCGTATCGGCTCAACCAAAAGGATTGGAA
ACCGACATTCATTCCGTTTGCAAAGGCAAGAAAGAGGATTGAGACAATATTCTCACAACTTACAGACCAGTTCTTGGTCATCAGGAACTACGCGAAAATA
ACGAATGGTTTGTTTGCCAGAATCATTGGCAAAATTAGTGCACTTACCATTCTGCAATACGTAAACTTCATTAACGACAAGCCCATTGGCAGAATTAAGT
ATGCACTAAATTAATTCCGCCAACAGGT
ACCATCGTATGTACAACCTTTATGCAAAATTCGTCAAAATACTTGAGATATGCAAGCAATTCTCTGAAAATCTCGTCAATGATTCGGGTAATGTTCCACG
TCGTGGTCCTGTTCCCAAGTTTTCGGATTTGGAAGTGGTGGCGCTATCCCTGACGGCAGAGACCGAGAGCATTGATAGTGAGAAGTGGTTGTTCGACTAT
AAATTGCAAGAATACAAGGACAGCATTCCCAATCTCATATCAAGGAGACAGTTCAATGACCGCAGGAAGAAAACGTCAGGCCTGTGTGAGGAACTGCGCA
AGCGGATTGCCATGGAAATGGATGGCGGAGAGGAACAATTCTTTGTTGACTCCAAGCCGATAGAGGTCTGTAGGGTTGCAAGAGGAAAACGTTGCAAGAT
GGGGCGTGCCGGCAATTTCTCGCAAGCTCCCGACTTCGGCTTCTGTGCTTCGCAGAACACGTATTATTTTGGTTATAAGTTACACGCTCTCTGTGGGTTA
AGTGGAGTTATCCATTCCTATGATCTGTCAAAGGCAAGTGTGGCTGACCTCCATTATATGAAGGATGTAAAACATACTTATCACGACTGTAGCATCTATG
GTGACAAAGGGTATATTGGAGCTGACGTACAGCTTGACTTGTTCGAAACCGCACACATAAGACTGGAGTGTCCGTATCGGCTCAACCAAAAGGATTGGAA
ACCGACATTCATTCCGTTTGCAAAGGCAAGAAAGAGGATTGAGACAATATTCTCACAACTTACAGACCAGTTCTTGGTCATCAGGAACTACGCGAAAATA
ACGAATGGTTTGTTTGCCAGAATCATTGGCAAAATTAGTGCACTTACCATTCTGCAATACGTAAACTTCATTAACGACAAGCCCATTGGCAGAATTAAGT
ATGCACTAAATTAATTCCGCCAACAGGT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
981 bp | 326 aa | 34 | 1014 | + | No |
Chemistry : DDE
ORF sequence :
MSKKLYMSLIFSNLVVIKTLSSNHRMYNLYAKFVKILEICKQFSENLVNDSGNVPRRGPVPKFSDLEVVALSLTAETESIDSEKWLFDYKLQEYKDSIPN
LISRRQFNDRRKKTSGLCEELRKRIAMEMDGGEEQFFVDSKPIEVCRVARGKRCKMGRAGNFSQAPDFGFCASQNTYYFGYKLHALCGLSGVIHSYDLSK
ASVADLHYMKDVKHTYHDCSIYGDKGYIGADVQLDLFETAHIRLECPYRLNQKDWKPTFIPFAKARKRIETIFSQLTDQFLVIRNYAKITNGLFARIIGK
ISALTILQYVNFINDKPIGRIKYALN
LISRRQFNDRRKKTSGLCEELRKRIAMEMDGGEEQFFVDSKPIEVCRVARGKRCKMGRAGNFSQAPDFGFCASQNTYYFGYKLHALCGLSGVIHSYDLSK
ASVADLHYMKDVKHTYHDCSIYGDKGYIGADVQLDLFETAHIRLECPYRLNQKDWKPTFIPFAKARKRIETIFSQLTDQFLVIRNYAKITNGLFARIIGK
ISALTILQYVNFINDKPIGRIKYALN
Blast result :
Comments
IS1187 is 66% aa similar to ISRa1.
References
1] Podglajen,I.(1999) Direct Submission GenBank.