IS110

  • Family IS110
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
Y00434 Y Streptomyces coelicolor
Streptomyces scabies A-26
Streptomyces coelicolor M145
Streptomyces coelicolor A3(2)
Streptomyces acrimycini IPV1610
Streptomyces ambofaciens ATCC15154
DNA section
IS Length : 1558 bp

Ends


Left end : CCCCCCCCGTTATGTTTTCCGCGGTCCTGCAAGAGGGCCGCTGGCCTCCGGGCCCGGCATGACTGTGTCCCCCTGTCGAAGGTATGACCTGGGGGGTGGT
Right end : CCCGCGGGCGTCGAGCTCGCGGCATGACCCCAGCAAGACCGAATCACCCCAAACCCGACAGGGGCGCCTTGACGAAGGACATAGAGGCACCCCCCCCCCC

Insertion site


Left flankDirect repeatRight flankDR Length
AGGGCACCCCCCCTTCCGG0

DNA sequence

CCCCCCCCGTTATGTTTTCCGCGGTCCTGCAAGAGGGCCGCTGGCCTCCGGGCCCGGCATGACTGTGTCCCCCTGTCGAAGGTATGACCTGGGGGGTGGT
GTCACCGGGCCCGGGAGGTGCCGTCGGAGACGCTGATGAGAGGTCCGGCCACCGCCCGGTCCGGCGCAATGCCGGACAGCTCGCGGGCGGCAGGTCTGCA
TAACGTGGATGCGCGCGTACGACACCACTGCCGAGGCCGGCACGTGCAACTCACCTGAAAGGGCGCGATGTTCGACACCGAAGACGTGGGCGTGTTCCTC
GGCCTGGACGTCGGCAAGACCGCTCACCACGGCCACGGACTCACCCCGGCCGGGAAGAAGGTCCTCGACAAGCAGCTGCCCAACAGCGAGCCGAGACTGC
GGGCCGTCTTCGACAAGCTGGCCGCGAAGTTCGGCACGGTCCTGGTGATCGTGGACCAGCCCGCTTCCATCGGCGCCCTCCCGCTCACGGTCGCCCGGGA
CGCCGGCTGCAAGGTCGCCTACCTGCCCGGCCTGGCGATGCGGCGGATCGCCGACCTGTATCCCGGCGAGGCCAAGACCGACGCGAAGGACGCAGCGGTC
ATCGCGGACGCGGCCCGCACGATGGCGCACACCCTGCGTTCCCTGGAGCTCACCGACGAGATCACCGCCGAGCTCTCGGTCCTCGTCGGCTTCGACCAGG
ACCTCGCGGCCGAGGCCACCCGCACCTCCAACCGGATACGCGGCCTGCTCACCCAGTTCCACCCCTCGCTGGAGCGCGTCCTGGGCCCCCGCCTCGACCA
CCAGGCCGTCACTTGGCTGCTGGAGCGCTACGGCTCTCCGGCCGCACTGCGCAAAGCCGGACGCCGCAGGCTCGTCGAGCTCGTCCGGCCCAAGGCCCCG
CGCATGGCCCAGCGGCTGATCGACGACATCTTCGACGCCCTGGACGAGCAGACCGTCGTGGTCCCGGGAACCGGCACCCTCGACATCGTCGTGCCCTCCC
TGGCCAGCTCTCTCACCGCTGTCCACGAACAGCGCCGGGCCCTGGAAGCCCAGATCAACGCCCTGCTGGAGGCCCACCCTCTTTCCCCGGTCCTGACGTC
GATGCCCGGCGTCGGCGTCAGGACCGCCGCCGTCCTGCTGGTCACCGTCGGCGACGGCACCAGCTTCCCCACCGCCGCCCACCTGGCCTCCTACGCCGGA
CTCGCCCCGACCACGAAGTCGTCCGGTACCTCGATCCACGGCGAACACGCGCCCCGAGGCGGCAACCGCCAGCTCAAACGCGCCATGTTCCTGTCCGCCT
TCGCCTGCATGAACGCCGACCCCGCCTCCCGCACCTACTACGACCGCCAGCGAGCCCGCGGCAAAACCCACACCCAGGCCCTCCTCCGCCTCGCCCGCCA
ACGCATCAGCGTCCTGTTCGCCATGCTCCGAGACGGCACCTTCTACGAATCCCGCATGCCCGCGGGCGTCGAGCTCGCGGCATGACCCCAGCAAGACCGA
ATCACCCCAAACCCGACAGGGGCGCCTTGACGAAGGACATAGAGGCACCCCCCCCCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1218 bp405 aa2681485+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MFDTEDVGVFLGLDVGKTAHHGHGLTPAGKKVLDKQLPNSEPRLRAVFDKLAAKFGTVLVIVDQPASIGALPLTVARDAGCKVAYLPGLAMRRIADLYPG
EAKTDAKDAAVIADAARTMAHTLRSLELTDEITAELSVLVGFDQDLAAEATRTSNRIRGLLTQFHPSLERVLGPRLDHQAVTWLLERYGSPAALRKAGRR
RLVELVRPKAPRMAQRLIDDIFDALDEQTVVVPGTGTLDIVVPSLASSLTAVHEQRRALEAQINALLEAHPLSPVVTSMPGVGVRTAAVLLVTVGDGTSF
PTAAHLASYAGLAPTTKSSGTSIHGEHAPRGGNRQLKRAMFLSAFACMNADPASRTYYDRQRARGKTHTQALLRLARQRISVLFAMLRDGTFYESRMPAG
VELAA

 

Blast result :
Comments
The option DR = 0 bp has been retained, and all the IS110 coordinates have been changed accordingly.
References
1] Chater, K.F., Bruton, C.J., Foster, S.G., and Tobek, I. (1985) Mol. Gen. Genet. 200, 235-239.
2] Bruton, C.J., and Chater, K.F. (1987) Nucl. Acids Res. 15, 7053-7065.
3] Kieser, H.M., Kieser, T., and Hopwood, D.A. (1992) J. Bacteriol. 174, 5496-5507.