IS110
- Family IS110
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
Y00434 | Y | Streptomyces coelicolor | Streptomyces scabies A-26 Streptomyces coelicolor M145 Streptomyces coelicolor A3(2) Streptomyces acrimycini IPV1610 Streptomyces ambofaciens ATCC15154 |
DNA section
IS Length : 1558 bp
Ends
Left end : CCCCCCCCGTTATGTTTTCCGCGGTCCTGCAAGAGGGCCGCTGGCCTCCGGGCCCGGCATGACTGTGTCCCCCTGTCGAAGGTATGACCTGGGGGGTGGT
Right end : CCCGCGGGCGTCGAGCTCGCGGCATGACCCCAGCAAGACCGAATCACCCCAAACCCGACAGGGGCGCCTTGACGAAGGACATAGAGGCACCCCCCCCCCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AGGGCACCC | CCCCTTCCGG | 0 |
DNA sequence
CCCCCCCCGTTATGTTTTCCGCGGTCCTGCAAGAGGGCCGCTGGCCTCCGGGCCCGGCATGACTGTGTCCCCCTGTCGAAGGTATGACCTGGGGGGTGGT
GTCACCGGGCCCGGGAGGTGCCGTCGGAGACGCTGATGAGAGGTCCGGCCACCGCCCGGTCCGGCGCAATGCCGGACAGCTCGCGGGCGGCAGGTCTGCA
TAACGTGGATGCGCGCGTACGACACCACTGCCGAGGCCGGCACGTGCAACTCACCTGAAAGGGCGCGATGTTCGACACCGAAGACGTGGGCGTGTTCCTC
GGCCTGGACGTCGGCAAGACCGCTCACCACGGCCACGGACTCACCCCGGCCGGGAAGAAGGTCCTCGACAAGCAGCTGCCCAACAGCGAGCCGAGACTGC
GGGCCGTCTTCGACAAGCTGGCCGCGAAGTTCGGCACGGTCCTGGTGATCGTGGACCAGCCCGCTTCCATCGGCGCCCTCCCGCTCACGGTCGCCCGGGA
CGCCGGCTGCAAGGTCGCCTACCTGCCCGGCCTGGCGATGCGGCGGATCGCCGACCTGTATCCCGGCGAGGCCAAGACCGACGCGAAGGACGCAGCGGTC
ATCGCGGACGCGGCCCGCACGATGGCGCACACCCTGCGTTCCCTGGAGCTCACCGACGAGATCACCGCCGAGCTCTCGGTCCTCGTCGGCTTCGACCAGG
ACCTCGCGGCCGAGGCCACCCGCACCTCCAACCGGATACGCGGCCTGCTCACCCAGTTCCACCCCTCGCTGGAGCGCGTCCTGGGCCCCCGCCTCGACCA
CCAGGCCGTCACTTGGCTGCTGGAGCGCTACGGCTCTCCGGCCGCACTGCGCAAAGCCGGACGCCGCAGGCTCGTCGAGCTCGTCCGGCCCAAGGCCCCG
CGCATGGCCCAGCGGCTGATCGACGACATCTTCGACGCCCTGGACGAGCAGACCGTCGTGGTCCCGGGAACCGGCACCCTCGACATCGTCGTGCCCTCCC
TGGCCAGCTCTCTCACCGCTGTCCACGAACAGCGCCGGGCCCTGGAAGCCCAGATCAACGCCCTGCTGGAGGCCCACCCTCTTTCCCCGGTCCTGACGTC
GATGCCCGGCGTCGGCGTCAGGACCGCCGCCGTCCTGCTGGTCACCGTCGGCGACGGCACCAGCTTCCCCACCGCCGCCCACCTGGCCTCCTACGCCGGA
CTCGCCCCGACCACGAAGTCGTCCGGTACCTCGATCCACGGCGAACACGCGCCCCGAGGCGGCAACCGCCAGCTCAAACGCGCCATGTTCCTGTCCGCCT
TCGCCTGCATGAACGCCGACCCCGCCTCCCGCACCTACTACGACCGCCAGCGAGCCCGCGGCAAAACCCACACCCAGGCCCTCCTCCGCCTCGCCCGCCA
ACGCATCAGCGTCCTGTTCGCCATGCTCCGAGACGGCACCTTCTACGAATCCCGCATGCCCGCGGGCGTCGAGCTCGCGGCATGACCCCAGCAAGACCGA
ATCACCCCAAACCCGACAGGGGCGCCTTGACGAAGGACATAGAGGCACCCCCCCCCCC
GTCACCGGGCCCGGGAGGTGCCGTCGGAGACGCTGATGAGAGGTCCGGCCACCGCCCGGTCCGGCGCAATGCCGGACAGCTCGCGGGCGGCAGGTCTGCA
TAACGTGGATGCGCGCGTACGACACCACTGCCGAGGCCGGCACGTGCAACTCACCTGAAAGGGCGCGATGTTCGACACCGAAGACGTGGGCGTGTTCCTC
GGCCTGGACGTCGGCAAGACCGCTCACCACGGCCACGGACTCACCCCGGCCGGGAAGAAGGTCCTCGACAAGCAGCTGCCCAACAGCGAGCCGAGACTGC
GGGCCGTCTTCGACAAGCTGGCCGCGAAGTTCGGCACGGTCCTGGTGATCGTGGACCAGCCCGCTTCCATCGGCGCCCTCCCGCTCACGGTCGCCCGGGA
CGCCGGCTGCAAGGTCGCCTACCTGCCCGGCCTGGCGATGCGGCGGATCGCCGACCTGTATCCCGGCGAGGCCAAGACCGACGCGAAGGACGCAGCGGTC
ATCGCGGACGCGGCCCGCACGATGGCGCACACCCTGCGTTCCCTGGAGCTCACCGACGAGATCACCGCCGAGCTCTCGGTCCTCGTCGGCTTCGACCAGG
ACCTCGCGGCCGAGGCCACCCGCACCTCCAACCGGATACGCGGCCTGCTCACCCAGTTCCACCCCTCGCTGGAGCGCGTCCTGGGCCCCCGCCTCGACCA
CCAGGCCGTCACTTGGCTGCTGGAGCGCTACGGCTCTCCGGCCGCACTGCGCAAAGCCGGACGCCGCAGGCTCGTCGAGCTCGTCCGGCCCAAGGCCCCG
CGCATGGCCCAGCGGCTGATCGACGACATCTTCGACGCCCTGGACGAGCAGACCGTCGTGGTCCCGGGAACCGGCACCCTCGACATCGTCGTGCCCTCCC
TGGCCAGCTCTCTCACCGCTGTCCACGAACAGCGCCGGGCCCTGGAAGCCCAGATCAACGCCCTGCTGGAGGCCCACCCTCTTTCCCCGGTCCTGACGTC
GATGCCCGGCGTCGGCGTCAGGACCGCCGCCGTCCTGCTGGTCACCGTCGGCGACGGCACCAGCTTCCCCACCGCCGCCCACCTGGCCTCCTACGCCGGA
CTCGCCCCGACCACGAAGTCGTCCGGTACCTCGATCCACGGCGAACACGCGCCCCGAGGCGGCAACCGCCAGCTCAAACGCGCCATGTTCCTGTCCGCCT
TCGCCTGCATGAACGCCGACCCCGCCTCCCGCACCTACTACGACCGCCAGCGAGCCCGCGGCAAAACCCACACCCAGGCCCTCCTCCGCCTCGCCCGCCA
ACGCATCAGCGTCCTGTTCGCCATGCTCCGAGACGGCACCTTCTACGAATCCCGCATGCCCGCGGGCGTCGAGCTCGCGGCATGACCCCAGCAAGACCGA
ATCACCCCAAACCCGACAGGGGCGCCTTGACGAAGGACATAGAGGCACCCCCCCCCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1218 bp | 405 aa | 268 | 1485 | + | No |
Chemistry : DEDD
ORF sequence :
MFDTEDVGVFLGLDVGKTAHHGHGLTPAGKKVLDKQLPNSEPRLRAVFDKLAAKFGTVLVIVDQPASIGALPLTVARDAGCKVAYLPGLAMRRIADLYPG
EAKTDAKDAAVIADAARTMAHTLRSLELTDEITAELSVLVGFDQDLAAEATRTSNRIRGLLTQFHPSLERVLGPRLDHQAVTWLLERYGSPAALRKAGRR
RLVELVRPKAPRMAQRLIDDIFDALDEQTVVVPGTGTLDIVVPSLASSLTAVHEQRRALEAQINALLEAHPLSPVVTSMPGVGVRTAAVLLVTVGDGTSF
PTAAHLASYAGLAPTTKSSGTSIHGEHAPRGGNRQLKRAMFLSAFACMNADPASRTYYDRQRARGKTHTQALLRLARQRISVLFAMLRDGTFYESRMPAG
VELAA
EAKTDAKDAAVIADAARTMAHTLRSLELTDEITAELSVLVGFDQDLAAEATRTSNRIRGLLTQFHPSLERVLGPRLDHQAVTWLLERYGSPAALRKAGRR
RLVELVRPKAPRMAQRLIDDIFDALDEQTVVVPGTGTLDIVVPSLASSLTAVHEQRRALEAQINALLEAHPLSPVVTSMPGVGVRTAAVLLVTVGDGTSF
PTAAHLASYAGLAPTTKSSGTSIHGEHAPRGGNRQLKRAMFLSAFACMNADPASRTYYDRQRARGKTHTQALLRLARQRISVLFAMLRDGTFYESRMPAG
VELAA
Blast result :
Comments
The option DR = 0 bp has been retained, and all the IS110 coordinates have been changed accordingly.
References
1] Chater, K.F., Bruton, C.J., Foster, S.G., and Tobek, I. (1985) Mol. Gen. Genet. 200, 235-239.
2] Bruton, C.J., and Chater, K.F. (1987) Nucl. Acids Res. 15, 7053-7065.
3] Kieser, H.M., Kieser, T., and Hopwood, D.A. (1992) J. Bacteriol. 174, 5496-5507.
2] Bruton, C.J., and Chater, K.F. (1987) Nucl. Acids Res. 15, 7053-7065.
3] Kieser, H.M., Kieser, T., and Hopwood, D.A. (1992) J. Bacteriol. 174, 5496-5507.