IS1008
- Family IS6
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AJ251307 | ND | Acinetobacter calcoaceticus | Acinetobacter calcoaceticus KHW14 plasmid pKLH201 |
DNA section
IS Length : 820 bp
Ends
IR Length : 17
IRL : GGCACTGTTGCAAATAGGCTGACATGATAAGCTAAATATCTTATTTATTT
IRR : GGCACTGTTGCAAATAGAGATTTGAGTCGATGAAGTTCCTTTTTAAAAGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AAGATCTTGG | CTGAAAGGTG | 0 |
DNA sequence
GGCACTGTTGCAAATAGGCTGACATGATAAGCTAAATATCTTATTTATTTCGAGATACAGCAGATGAATCCCTTCCATGGTCGGCACTTTCAAGGTGAAA
TCATTCTTTGGGCTGTTCGTTGGTATTGTAAATATGGCATCAGCTATCGTGAACTTCAAGAAATGCTCGCTGAACGAGGTGTGAATGTTGACCACACCAC
AATTTATCGTTGGGTTCAGCGTTATGCTCCAGAAATGGAAAAACGCTTACGCTGGTATTGGCGTAATCCTACAGATTTACATTCATGGCATATGGATGAG
ACTTATATCAAAGTGAAGGGGCGATGGACTTACCTGTATCGTGCAGTTGATCAACGTGGTCATACGATTGACTTTTACCTTTCCGCTAGACGGAACAGTA
AATCAGCCTATTGTTTTTTAGGAAAGATCTTCAATACGGTGAAAAAATGGCAAATTCCACGGGTCATCAATACAGATAAAGCAGCGACCTATGGCCATGC
TTTATCACGGTTAAAGCGAGAAGGAAAATGTCCAGTAGATATTGAGCACAGGCAGATTAAGTATAAAAATAATGTCATTGAATGTGATCATGGTAAGTTA
AAGCGGATCATCAGGGCCACATTAGGATTCAAATCTATGAAGACGGCTTATGCCACAATTAAAGGTATTGAAGTCATGCGTGCACTACGTAAAGGACAAG
CATCGTCATTTTATTATGGTCAGCCTCAAGGTGAAGTGTGTCTAATCAACAGGGTTTTCGGTCTCTAAGCACTTTTAAAAAGGAACTTCATCGACTCAAA
TCTCTATTTGCAACAGTGCC
TCATTCTTTGGGCTGTTCGTTGGTATTGTAAATATGGCATCAGCTATCGTGAACTTCAAGAAATGCTCGCTGAACGAGGTGTGAATGTTGACCACACCAC
AATTTATCGTTGGGTTCAGCGTTATGCTCCAGAAATGGAAAAACGCTTACGCTGGTATTGGCGTAATCCTACAGATTTACATTCATGGCATATGGATGAG
ACTTATATCAAAGTGAAGGGGCGATGGACTTACCTGTATCGTGCAGTTGATCAACGTGGTCATACGATTGACTTTTACCTTTCCGCTAGACGGAACAGTA
AATCAGCCTATTGTTTTTTAGGAAAGATCTTCAATACGGTGAAAAAATGGCAAATTCCACGGGTCATCAATACAGATAAAGCAGCGACCTATGGCCATGC
TTTATCACGGTTAAAGCGAGAAGGAAAATGTCCAGTAGATATTGAGCACAGGCAGATTAAGTATAAAAATAATGTCATTGAATGTGATCATGGTAAGTTA
AAGCGGATCATCAGGGCCACATTAGGATTCAAATCTATGAAGACGGCTTATGCCACAATTAAAGGTATTGAAGTCATGCGTGCACTACGTAAAGGACAAG
CATCGTCATTTTATTATGGTCAGCCTCAAGGTGAAGTGTGTCTAATCAACAGGGTTTTCGGTCTCTAAGCACTTTTAAAAAGGAACTTCATCGACTCAAA
TCTCTATTTGCAACAGTGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
705 bp | 234 aa | 64 | 768 | + | No |
Chemistry : DDE
ORF sequence :
MNPFHGRHFQGEIILWAVRWYCKYGISYRELQEMLAERGVNVDHTTIYRWVQRYAPEMEKRLRWYWRNPTDLHSWHMDETYIKVKGRWTYLYRAVDQRGH
TIDFYLSARRNSKSAYCFLGKIFNTVKKWQIPRVINTDKAATYGHALSRLKREGKCPVDIEHRQIKYKNNVIECDHGKLKRIIRATLGFKSMKTAYATIK
GIEVMRALRKGQASSFYYGQPQGEVCLINRVFGL
TIDFYLSARRNSKSAYCFLGKIFNTVKKWQIPRVINTDKAATYGHALSRLKREGKCPVDIEHRQIKYKNNVIECDHGKLKRIIRATLGFKSMKTAYATIK
GIEVMRALRKGQASSFYYGQPQGEVCLINRVFGL
Blast result :
Comments
IS1008 is 99% aa similar to ISOur1.
References
1] Kholodii,G., Mindlin,S., Gorlenko,Z., Petrova,M., Hobman,J. and Nikiforov,V. (20004) Microbiology (Reading, Engl.) 150 (PT 4), 979-992