IS1008

  • Family IS6
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AJ251307 ND Acinetobacter calcoaceticus
Acinetobacter calcoaceticus KHW14 plasmid pKLH201
DNA section
IS Length : 820 bp

Ends


IR Length : 17

IRL : GGCACTGTTGCAAATAGGCTGACATGATAAGCTAAATATCTTATTTATTT
IRR : GGCACTGTTGCAAATAGAGATTTGAGTCGATGAAGTTCCTTTTTAAAAGT

Insertion site


Left flankDirect repeatRight flankDR Length
AAGATCTTGGCTGAAAGGTG0

DNA sequence

GGCACTGTTGCAAATAGGCTGACATGATAAGCTAAATATCTTATTTATTTCGAGATACAGCAGATGAATCCCTTCCATGGTCGGCACTTTCAAGGTGAAA
TCATTCTTTGGGCTGTTCGTTGGTATTGTAAATATGGCATCAGCTATCGTGAACTTCAAGAAATGCTCGCTGAACGAGGTGTGAATGTTGACCACACCAC
AATTTATCGTTGGGTTCAGCGTTATGCTCCAGAAATGGAAAAACGCTTACGCTGGTATTGGCGTAATCCTACAGATTTACATTCATGGCATATGGATGAG
ACTTATATCAAAGTGAAGGGGCGATGGACTTACCTGTATCGTGCAGTTGATCAACGTGGTCATACGATTGACTTTTACCTTTCCGCTAGACGGAACAGTA
AATCAGCCTATTGTTTTTTAGGAAAGATCTTCAATACGGTGAAAAAATGGCAAATTCCACGGGTCATCAATACAGATAAAGCAGCGACCTATGGCCATGC
TTTATCACGGTTAAAGCGAGAAGGAAAATGTCCAGTAGATATTGAGCACAGGCAGATTAAGTATAAAAATAATGTCATTGAATGTGATCATGGTAAGTTA
AAGCGGATCATCAGGGCCACATTAGGATTCAAATCTATGAAGACGGCTTATGCCACAATTAAAGGTATTGAAGTCATGCGTGCACTACGTAAAGGACAAG
CATCGTCATTTTATTATGGTCAGCCTCAAGGTGAAGTGTGTCTAATCAACAGGGTTTTCGGTCTCTAAGCACTTTTAAAAAGGAACTTCATCGACTCAAA
TCTCTATTTGCAACAGTGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
705 bp234 aa64768+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNPFHGRHFQGEIILWAVRWYCKYGISYRELQEMLAERGVNVDHTTIYRWVQRYAPEMEKRLRWYWRNPTDLHSWHMDETYIKVKGRWTYLYRAVDQRGH
TIDFYLSARRNSKSAYCFLGKIFNTVKKWQIPRVINTDKAATYGHALSRLKREGKCPVDIEHRQIKYKNNVIECDHGKLKRIIRATLGFKSMKTAYATIK
GIEVMRALRKGQASSFYYGQPQGEVCLINRVFGL

 

Blast result :
Comments
IS1008 is 99% aa similar to ISOur1.
References
1] Kholodii,G., Mindlin,S., Gorlenko,Z., Petrova,M., Hobman,J. and Nikiforov,V. (20004) Microbiology (Reading, Engl.) 150 (PT 4), 979-992