ISLga1

  • Family IS30
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AF479752 ND Lactobacillus gasseri
Lactobacillus gasseri ADH
DNA section
IS Length : 1179 bp

Ends


IR Length : 21/25

IRL : ATTGTAAAATCAAATTGAACACTTTAGAAAAATAAAAAGTCCATTCGGAC
IRR : ATTGCAATAATAAATTGAACACTTTTAGTTAAGCTGCTTGATAGATTCGA

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

ATTGTAAAATCAAATTGAACACTTTAGAAAAATAAAAAGTCCATTCGGACCTGTTTGATAGAATGTTAATAACCACAAAAACTTTCTATTGGAGGTCAAA
ATGGACTCTTTACATTCTACCATGAATCGGCACGTTAAAGGAAAGCATTTATCATTTGAAGAGCGAGTTATTATTCAATTGCGTTTGAAAGATGGCTGCT
CTTTGCGTGCAATTGCTCGTGAACTCAACTGTTCTCCTTCTACTATCAGTTATGAGGTTAAACGTGGCACTGTAAAACTGTATCATGGTAAAGTCAAAAG
ATACAAGGCTACTCAAGGACATGATGTATATCAAGCTCATCGTAAAAAATTGTGGGGCGTAAATCAGACTTTCTCAAAAAAATCAATTTATTCACTAATG
TCCACAAACATTTCTTTAAAGACGGTTGGTCGCTTGATGTTTGCAGTAATCGTGCCACTGTTGCTGGCGAATTCTCTAGCAGCGATGTTGTCTGCACCAA
AACTCTTTATAATTACGTTGATAAGGGCTTATTAGGCATTTATAATTACGACTTGCCTGAGAAGCTTAAACGCAATACCAAGCTTCATCGTGTGCGCAAA
AACAAGAAAAAGCTTGGCAGAAGTATTGAAGAACGTCCAAAAGAAATTAGTGAACGTAATGAATTCGGTCATTGGGAATGCGATTTGGTCCTTGGACATA
AGACTAAAGATGATGAAGTGCTGTTAACCTTATCTGAGCGCATGAGTCGTGAATTCTTAATTATTCGTATTCCCGACAAGACTTCTATCAGTGTCATGCA
GGCCTTTAAAGAACTCCAAAGACAATACAGTGAACACTGGAATGATATTTTTAAAACTATTACCACTGATAATGGTTCAGAATTTGCGGATCTTTCCAAC
CTAGAAGAAGCTTCCAATACACTGGTTTACTATGCCCATCCTTACACTTCTTGTGATAAGGGAACAGTTGAAAGACACAATGGTCTTATTCGCAGATTCA
TTCCTAAAGGAGAAGCAATAGCTAACTATTCTTTACAAAATATCATTGACATTGAAACCTGGTGCAACTCATTGCCAAGAAAAATTTTAGCTTATCACAC
ACCAGATGAATCTTTGAAAGAGAATTAGATCGAATCTATCAAGCAGCTTAACTAAAAGTGTTCAATTTATTATTGCAAT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1051 bp349 aa1011151+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MDSLHSTMNQHVKGKHLSFEERVIIQLRLKDGCSLRAIARELNCSPSTISYEIKRGTVKLYHGKVKRYKATQGHDVYQAHRKNCGRKSDFLKKTQFIHYV
HKHFFKDGWSLDVCSNRATVAGEFSSSDVVCTKTLYNYVDKGLLGIYNYDLPEKLKRNTKLHRVRKNKKKLGRSIEERPKEISERNEFGHWECDLVLGHK
TKDDEVLLTLSERMSREFLIIRIPDKTSISVMQAFKELQRQYSEHWNDIFKTITTDNGSEFADLSNLEEASNTLVYYAHPYTSCDKGTVERHNGLIRRFI
PKGEAIANYSLQNIIDIETWCNSLPRKILAYHTPDEIFERELDRIYQAA

 

Blast result :
Comments
ISLga1 is 89% aa similar to ISLjo1.
References
1] Walker,D.C., Russell,W.M. and Klaenhammer,T.R. (2002) Direct submission GenBank.