ISLjo5
- Family IS200/IS605
- Group IS605
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_005362 | ND | Lactobacillus johnsonii | Lactobacillus johnsonii NCC 533 |
DNA section
IS Length : 2101 bp
Ends
Left end : TGAAATCCGCCCGTAAATCCCCGTATTTTAATGCGGGGATGGATAGGGCTTACCGTCTTTGATTGCGTTATAGACTTGATCGTTGATGTATTTCTCTACC II struct. : Yes
Right end : CAATTCAAACAAGTTAAGCCTGTATCTAAGCAAATTGGTGAAATAGTTAGCGCAAGCTAACGAACCACCAAGCCCCAGAATTCATTCTAGGGTAGTTGAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
TCTAAAAATCACTTTT | TTAA | CACTATAAAC | tgac |
DNA sequence
TGAAATCCGCCCGTAAATCCCCGTATTTTAATGCGGGGATGGATAGGGCTTACCGTCTTTGATTGCGTTATAGACTTGATCGTTGATGTATTTCTCTACC
ACTTCTTTGGACATATTGCCTACACTGCCAAAATAATAGCTTGGCGACCATAGATGTCCGCCCCACATCTTGTTTTGCCTAATTTCGGGATGTGCCTGCA
AAAACAACCTGCCACTTCTACCTTTTAGAGCCTTGATTACACTAGAACCAGATTTAGAGGGCTTAAAGCTAACCAATAAGTGAACATGTTCGGGCATGAT
CTCCATTTTTTCTATCTTAATTTGATTATCCTCGGCAATCTGCAATAAAAGCTTTCGCATTTCTTCGGCTAAATTGGTATTTGTAAAAATTTGATTGCGG
TATTTGGTACACCAAATCAAATGATAATGAGTATTGTAGACGTAGTGCTTTTCATAGCCTGCGTCTTTTATTTTGTCTTTCTTTTTTATCATAGAGAATA
TTGCTAACCTCTTTGTTTATAAGTGTTTACTATTGATTATAATATCTACATAGTCTATAATCAAATCATATCAATAAAAGGGGGTGAAAAAATGAAAAGA
ATGAGCAGTTTAGAATATCACTTTGGCGTAAAAGTAAGATTCTATCCTAGCAATAATCAAAAGAAAATGATTAAGCAGAATTATGACGCACAGCGTTTTG
TTTATAACCAATACGTTGGCGCTGGCCGTTTGATCTATCACGTTAAAAAGGCCAATAGGATCAAACAGCTTAGCAGCGGTTTGCCCTTTGTAATGCAGGG
AATGTCTGAATATGAAAATCAACAGGCATTAAGAATGATTGATACGCAAGACTTAATTTCCAAACCTAAAAATATTAGAGATAAATATGATTTCTTGCGT
GTTGAAGACATTGATAGCTTGGCTATCGCCAATGCAATTCAAAATTATCACAAAGCATGGAGAAACTATCATAAAATTGGCTATGGAATACCAACCTTTC
ACAAGAAACGAAGCAGCTGGTCATATCAGACTAACTGTCAGTACATAAAGCAAGACGCAGCCTATCTTGATAATGGTACGGTTAGATTTATTGACGCTAA
GCATGTTAAGCTTCCTAAACTGGGAATAGTGAGAATTGCTGGATTGCGCAAGCTGATTAAAAAGCGTTTGTTTAACCGTATTCCTATTCGAATCGGTACT
GCCTCAATTAAGAAAACGGCAGACGATCAGTTTTATCTTTCTTTACAGCTGGGAAGTGATATTGCCTTTGTCAAAGACTATGCTAAAACACAAAAGCAGA
TCGGCATTGATCTTAACTTGGATAATTTCTTGACGGATTCTAACGGTGCAATGGTAGCTAATCCAAGGTTTTATCGCAGAGCCAAGAAAAAGCTCGCCCA
CGCTCAAAGAATACTTTCACGTAGAGAACGCAGAGCCAAAAAAGAAGGACGCTCTTTGTGTGAATCCAAGAACTATCAAAAACAGCGCCTAGCCGTAGCT
AAACTGCACGACAGGATTCGCAGACAGAGACAAGACTTCTTGCAGGTTCTTTCTACTGCATTAATCAAAAACCACGATTTAGTAGTAGCCGAAGAACTAA
GAAGTAAAAATCTGTTAAAGAATCATGCTCTTGCCCAATCTATTTCTGATGCAGGATGGCGGAGTTTCTTAACCATGCTCGAATATAAAGCTGATCTTCA
TGGCAAAAAGTTTGTCACGATTGACCCAAAATTTACTACGCAAAGGTGTCATAATTGCGGAAACATAATGGGACAAAACGGCTATAAGAAACTTACGCTT
AAGGATCGAAAATGGACTTGCCCAGTATGCGGAAGTTATCACATAAGAGATTGGAATGCTTCTGTAAACATCTTAGAAAAAAGCAAAGGTATTTGGAAAA
ATCCTAAAATAAAAAAGCGATCTAAATAGACTGCAGTCCGTTTGGCAACTTGCAGACTCAAAAGGCTTTGGTAATTGGGAAAACCGCTGTTTGGATTTTC
GCAATTCAAACAAGTTAAGCCTGTATCTAAGCAAATTGGTGAAATAGTTAGCGCAAGCTAACGAACCACCAAGCCCCAGAATTCATTCTAGGGTAGTTGA
C
ACTTCTTTGGACATATTGCCTACACTGCCAAAATAATAGCTTGGCGACCATAGATGTCCGCCCCACATCTTGTTTTGCCTAATTTCGGGATGTGCCTGCA
AAAACAACCTGCCACTTCTACCTTTTAGAGCCTTGATTACACTAGAACCAGATTTAGAGGGCTTAAAGCTAACCAATAAGTGAACATGTTCGGGCATGAT
CTCCATTTTTTCTATCTTAATTTGATTATCCTCGGCAATCTGCAATAAAAGCTTTCGCATTTCTTCGGCTAAATTGGTATTTGTAAAAATTTGATTGCGG
TATTTGGTACACCAAATCAAATGATAATGAGTATTGTAGACGTAGTGCTTTTCATAGCCTGCGTCTTTTATTTTGTCTTTCTTTTTTATCATAGAGAATA
TTGCTAACCTCTTTGTTTATAAGTGTTTACTATTGATTATAATATCTACATAGTCTATAATCAAATCATATCAATAAAAGGGGGTGAAAAAATGAAAAGA
ATGAGCAGTTTAGAATATCACTTTGGCGTAAAAGTAAGATTCTATCCTAGCAATAATCAAAAGAAAATGATTAAGCAGAATTATGACGCACAGCGTTTTG
TTTATAACCAATACGTTGGCGCTGGCCGTTTGATCTATCACGTTAAAAAGGCCAATAGGATCAAACAGCTTAGCAGCGGTTTGCCCTTTGTAATGCAGGG
AATGTCTGAATATGAAAATCAACAGGCATTAAGAATGATTGATACGCAAGACTTAATTTCCAAACCTAAAAATATTAGAGATAAATATGATTTCTTGCGT
GTTGAAGACATTGATAGCTTGGCTATCGCCAATGCAATTCAAAATTATCACAAAGCATGGAGAAACTATCATAAAATTGGCTATGGAATACCAACCTTTC
ACAAGAAACGAAGCAGCTGGTCATATCAGACTAACTGTCAGTACATAAAGCAAGACGCAGCCTATCTTGATAATGGTACGGTTAGATTTATTGACGCTAA
GCATGTTAAGCTTCCTAAACTGGGAATAGTGAGAATTGCTGGATTGCGCAAGCTGATTAAAAAGCGTTTGTTTAACCGTATTCCTATTCGAATCGGTACT
GCCTCAATTAAGAAAACGGCAGACGATCAGTTTTATCTTTCTTTACAGCTGGGAAGTGATATTGCCTTTGTCAAAGACTATGCTAAAACACAAAAGCAGA
TCGGCATTGATCTTAACTTGGATAATTTCTTGACGGATTCTAACGGTGCAATGGTAGCTAATCCAAGGTTTTATCGCAGAGCCAAGAAAAAGCTCGCCCA
CGCTCAAAGAATACTTTCACGTAGAGAACGCAGAGCCAAAAAAGAAGGACGCTCTTTGTGTGAATCCAAGAACTATCAAAAACAGCGCCTAGCCGTAGCT
AAACTGCACGACAGGATTCGCAGACAGAGACAAGACTTCTTGCAGGTTCTTTCTACTGCATTAATCAAAAACCACGATTTAGTAGTAGCCGAAGAACTAA
GAAGTAAAAATCTGTTAAAGAATCATGCTCTTGCCCAATCTATTTCTGATGCAGGATGGCGGAGTTTCTTAACCATGCTCGAATATAAAGCTGATCTTCA
TGGCAAAAAGTTTGTCACGATTGACCCAAAATTTACTACGCAAAGGTGTCATAATTGCGGAAACATAATGGGACAAAACGGCTATAAGAAACTTACGCTT
AAGGATCGAAAATGGACTTGCCCAGTATGCGGAAGTTATCACATAAGAGATTGGAATGCTTCTGTAAACATCTTAGAAAAAAGCAAAGGTATTTGGAAAA
ATCCTAAAATAAAAAAGCGATCTAAATAGACTGCAGTCCGTTTGGCAACTTGCAGACTCAAAAGGCTTTGGTAATTGGGAAAACCGCTGTTTGGATTTTC
GCAATTCAAACAAGTTAAGCCTGTATCTAAGCAAATTGGTGAAATAGTTAGCGCAAGCTAACGAACCACCAAGCCCCAGAATTCATTCTAGGGTAGTTGA
C
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
465 bp | 154 aa | 492 | 28 | - | No |
Chemistry : Y1
ORF sequence :
MIKKKDKIKDAGYEKHYVYNTHYHLIWCTKYRNQIFTNTNLAEEMRKLLLQIAEDNQIKIEKMEIMPEHVHLLVSFKPSKSGSSVIKALKGRSGRLFLQA
HPEIRQNKMWGGHLWSPSYYFGSVGNMSKEVVEKYINDQVYNAIKDGKPYPSPH
HPEIRQNKMWGGHLWSPSYYFGSVGNMSKEVVEKYINDQVYNAIKDGKPYPSPH
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1338 bp | 445 aa | 592 | 1929 | + | No |
AG : TnpB
ORF sequence :
MKRMSSLEYHFGVKVRFYPSNNQKKMIKQNYDAQRFVYNQYVGAGRLIYHVKKANRIKQLSSGLPFVMQGMSEYENQQALRMIDTQDLISKPKNIRDKYD
FLRVEDIDSLAIANAIQNYHKAWRNYHKIGYGIPTFHKKRSSWSYQTNCQYIKQDAAYLDNGTVRFIDAKHVKLPKLGIVRIAGLRKLIKKRLFNRIPIR
IGTASIKKTADDQFYLSLQLGSDIAFVKDYAKTQKQIGIDLNLDNFLTDSNGAMVANPRFYRRAKKKLAHAQRILSRRERRAKKEGRSLCESKNYQKQRL
AVAKLHDRIRRQRQDFLQVLSTALIKNHDLVVAEELRSKNLLKNHALAQSISDAGWRSFLTMLEYKADLHGKKFVTIDPKFTTQRCHNCGNIMGQNGYKK
LTLKDRKWTCPVCGSYHIRDWNASVNILEKSKGIWKNPKIKKRSK
FLRVEDIDSLAIANAIQNYHKAWRNYHKIGYGIPTFHKKRSSWSYQTNCQYIKQDAAYLDNGTVRFIDAKHVKLPKLGIVRIAGLRKLIKKRLFNRIPIR
IGTASIKKTADDQFYLSLQLGSDIAFVKDYAKTQKQIGIDLNLDNFLTDSNGAMVANPRFYRRAKKKLAHAQRILSRRERRAKKEGRSLCESKNYQKQRL
AVAKLHDRIRRQRQDFLQVLSTALIKNHDLVVAEELRSKNLLKNHALAQSISDAGWRSFLTMLEYKADLHGKKFVTIDPKFTTQRCHNCGNIMGQNGYKK
LTLKDRKWTCPVCGSYHIRDWNASVNILEKSKGIWKNPKIKKRSK
Blast result :
Comments
ISLjo5 is 65% aa similar to ISDra2 (ORF1) and 47% to IS1341 (ORF2).
ORFA is on the complementary strand.
ORFA is on the complementary strand.
References
1] Pridmore,R.D., Berger,B., Desiere,F., Vilanova,D., Barretto,C., Pittet,A.C., Zwahlen,M.C., Rouvet,M., Altermann,E., Barrangou,R., Mollet,B., Mercenier,A., Klaenhammer,T., Arigoni,F. and Schell,M.A. (2004) Proc. Natl. Acad. Sci. U.S.A. 101 (8), 2512-2517