ISSep3
- Family IS200/IS605
- Group IS200
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_004461 | ND | Staphylococcus epidermidis | Staphylococcus epidermidis ATCC 12228 Staphylococcus aureus subsp. aureus MW2 Staphylococcus aureus subsp. aureus MSSA476 |
DNA section
IS Length : 740 bp
Ends
Left end : TGTATAAAGAAAACCATGCGCTATGCGTATGGTTTAGAAAAGGTTTTACCGTTATCTAAAAAAACATCTCATCATGCTAGAATATATATTGGTCAGCCAA II struct. : Yes
Right end : TAGTGCAGTTGGCTGACCTATCAGTGCCCTTTTAGGGCTGGCCAGTAAGAAAGGCTTATAGCCGTAGAACAAACCACCCGTTCATACGGGTGGTTTTGAT II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
ATTTATTTACGGGCTTCT | TTAT | TCATAATATAAGTTAC | tgat |
AATTCATTACTGGCTTCT | TTAT | TTACTTATCCTGGAAC | tgat |
TAGAAATTGTCTTTTTTA | TAAT | TGAAAACTATAAAAT | tgat |
DNA sequence
TGTATAAAGAAAACCATGCGCTATGCGTATGGTTTAGAAAAGGTTTTACCGTTATCTAAAAAAACATCTCATCATGCTAGAATATATATTGGTCAGCCAA
CCAAAATATTCAACACGAGGAGATGCTTTTTAATGTCATCTGACACAAACAGTTTAGCACATACAAAATGGAATTGTAAGTATCACATAGTCTTTGCACC
AAAATATAGAAGACAAGTGATATATGGAAAAATCAAAAGAGATATTGGAGTTATTTTACGTCAACTATGTGAAAGAAAAGGCGTAGAAATTATAGAAGCA
GAAGCATGTAAAGATCATATTCATATGTTAGTTAGTATTCCACCTAAATTAGGAGTATCATCATTTGTTGGATATTTAAAAGGTAAAAGTAGTTTAATGA
TTTTTGATAGACATGCTAATTTAAAATATAGATATGGAAATAGAAAGTTTTGGTGTAAAGGATTTTATGTAGATACAGTAGGTAGAAATAAAAAGGTAAT
TGAAAATTACATTCGTAATCAATTACAAGAAGATATCGTTGCAGATCAAATTTCAATGGAAGAATACCTAGATCCCTTTACAGGAGAAGAAATTAAAAAA
AGACGAAAAAAATAGTACCCCTTTAGGGGTGCTGGGAAAGTAGTGCAGTTGGCTGACCTATCAGTGCCCTTTTAGGGCTGGCCAGTAAGAAAGGCTTATA
GCCGTAGAACAAACCACCCGTTCATACGGGTGGTTTTGAT
CCAAAATATTCAACACGAGGAGATGCTTTTTAATGTCATCTGACACAAACAGTTTAGCACATACAAAATGGAATTGTAAGTATCACATAGTCTTTGCACC
AAAATATAGAAGACAAGTGATATATGGAAAAATCAAAAGAGATATTGGAGTTATTTTACGTCAACTATGTGAAAGAAAAGGCGTAGAAATTATAGAAGCA
GAAGCATGTAAAGATCATATTCATATGTTAGTTAGTATTCCACCTAAATTAGGAGTATCATCATTTGTTGGATATTTAAAAGGTAAAAGTAGTTTAATGA
TTTTTGATAGACATGCTAATTTAAAATATAGATATGGAAATAGAAAGTTTTGGTGTAAAGGATTTTATGTAGATACAGTAGGTAGAAATAAAAAGGTAAT
TGAAAATTACATTCGTAATCAATTACAAGAAGATATCGTTGCAGATCAAATTTCAATGGAAGAATACCTAGATCCCTTTACAGGAGAAGAAATTAAAAAA
AGACGAAAAAAATAGTACCCCTTTAGGGGTGCTGGGAAAGTAGTGCAGTTGGCTGACCTATCAGTGCCCTTTTAGGGCTGGCCAGTAAGAAAGGCTTATA
GCCGTAGAACAAACCACCCGTTCATACGGGTGGTTTTGAT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
483 bp | 160 aa | 133 | 615 | + | No |
Chemistry : Y1
ORF sequence :
MSSDTNSLAHTKWNCKYHIVFAPKYRRQVIYGKIKRDIGVILRQLCERKGVEIIEAEACKDHIHMLVSIPPKLGVSSFVGYLKGKSSLMIFDRHANLKYR
YGNRKFWCKGFYVDTVGRNKKVIENYIRNQLQEDIVADQISMEEYLDPFTGEEIKKRRKK
YGNRKFWCKGFYVDTVGRNKKVIENYIRNQLQEDIVADQISMEEYLDPFTGEEIKKRRKK
Blast result :
Comments
ISSep3 is 87% aa similar to IS657. There are 3 full and 3 partial copies of ISSep3 in Staphylococcus epidermidis genome and 2 partial copies in Staphylococcus aureus MW2 genome and 1 partial copy in Staphylococcus aureus MSSA476 genome .
References
1] Zhang,Y., Ren,S., Li,H., Fu,G., Lu,L., Lu,G., Jia,J., Tu,Y., Qin,Z., Chen,Z. and Wen,Y (2002) Genbank direct submission.