ISSep3

  • Family IS200/IS605
  • Group IS200
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_004461 ND Staphylococcus epidermidis
Staphylococcus epidermidis ATCC 12228
Staphylococcus aureus subsp. aureus MW2
Staphylococcus aureus subsp. aureus MSSA476
DNA section
IS Length : 740 bp

Ends


Left end : TGTATAAAGAAAACCATGCGCTATGCGTATGGTTTAGAAAAGGTTTTACCGTTATCTAAAAAAACATCTCATCATGCTAGAATATATATTGGTCAGCCAA II struct. : Yes
Right end : TAGTGCAGTTGGCTGACCTATCAGTGCCCTTTTAGGGCTGGCCAGTAAGAAAGGCTTATAGCCGTAGAACAAACCACCCGTTCATACGGGTGGTTTTGAT II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
ATTTATTTACGGGCTTCTTTATTCATAATATAAGTTACtgat
AATTCATTACTGGCTTCTTTATTTACTTATCCTGGAACtgat
TAGAAATTGTCTTTTTTATAATTGAAAACTATAAAATtgat

DNA sequence

TGTATAAAGAAAACCATGCGCTATGCGTATGGTTTAGAAAAGGTTTTACCGTTATCTAAAAAAACATCTCATCATGCTAGAATATATATTGGTCAGCCAA
CCAAAATATTCAACACGAGGAGATGCTTTTTAATGTCATCTGACACAAACAGTTTAGCACATACAAAATGGAATTGTAAGTATCACATAGTCTTTGCACC
AAAATATAGAAGACAAGTGATATATGGAAAAATCAAAAGAGATATTGGAGTTATTTTACGTCAACTATGTGAAAGAAAAGGCGTAGAAATTATAGAAGCA
GAAGCATGTAAAGATCATATTCATATGTTAGTTAGTATTCCACCTAAATTAGGAGTATCATCATTTGTTGGATATTTAAAAGGTAAAAGTAGTTTAATGA
TTTTTGATAGACATGCTAATTTAAAATATAGATATGGAAATAGAAAGTTTTGGTGTAAAGGATTTTATGTAGATACAGTAGGTAGAAATAAAAAGGTAAT
TGAAAATTACATTCGTAATCAATTACAAGAAGATATCGTTGCAGATCAAATTTCAATGGAAGAATACCTAGATCCCTTTACAGGAGAAGAAATTAAAAAA
AGACGAAAAAAATAGTACCCCTTTAGGGGTGCTGGGAAAGTAGTGCAGTTGGCTGACCTATCAGTGCCCTTTTAGGGCTGGCCAGTAAGAAAGGCTTATA
GCCGTAGAACAAACCACCCGTTCATACGGGTGGTTTTGAT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
483 bp160 aa133615+No
ORF function : Transposase
Chemistry : Y1

ORF sequence :

MSSDTNSLAHTKWNCKYHIVFAPKYRRQVIYGKIKRDIGVILRQLCERKGVEIIEAEACKDHIHMLVSIPPKLGVSSFVGYLKGKSSLMIFDRHANLKYR
YGNRKFWCKGFYVDTVGRNKKVIENYIRNQLQEDIVADQISMEEYLDPFTGEEIKKRRKK

 

Blast result :
Comments
ISSep3 is 87% aa similar to IS657. There are 3 full and 3 partial copies of ISSep3 in Staphylococcus epidermidis genome and 2 partial copies in Staphylococcus aureus MW2 genome and 1 partial copy in Staphylococcus aureus MSSA476 genome .
References
1] Zhang,Y., Ren,S., Li,H., Fu,G., Lu,L., Lu,G., Jia,J., Tu,Y., Qin,Z., Chen,Z. and Wen,Y (2002) Genbank direct submission.