ISSep2
- Family IS110
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_004461 | ND | Staphylococcus epidermidis | Staphylococcus aureus subsp. aureus MRSA252 Staphylococcus aureus subsp. aureus Mu50 Staphylococcus epidermidis ATCC 12228 Staphylococcus aureus subsp. aureus MW2 Staphylococcus aureus subsp. aureus MSSA476 |
DNA section
IS Length : 1564 bp
Ends
Left end : TAAAACATACTAAGATTAGCTATGAAGAAATCTATGACGATAGATTTTTTCATAGCTATTTTTTATAGTTATAGAGAGAAGTAGACTGTCCAGACTCTTG
Right end : CAATCAAATATAGTTTAACACCTTATTCAAAAAAATTAAAATGAACGGTTTAGTTAAGTAATGCTTATTTTAATTATAAGTACTTGACTAATCGTAGGAA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|
DNA sequence
TAAAACATACTAAGATTAGCTATGAAGAAATCTATGACGATAGATTTTTTCATAGCTATTTTTTATAGTTATAGAGAGAAGTAGACTGTCCAGACTCTTG
GATTTTAAATCCGTATAAAAAACAAGTCAGCTTTACTCTCGCCTTTTGAAATTCGTTTGTAGTATGTTGGGTTCTTGAAACCGTGTATAGGAAAATGAAA
TGAGAAAGGTTAAGTAAAGTTTTTAGCTTCTCAATTATTCAAAGGAGGTTTTTTTATCGATTACTTAGGTGTTGATATTAGTAAAAGAAGTAGTGTAGTT
GCACATTATAAAAATGGAAAATTCCAAAAAGAGTTTTTCATCCAGAATAATAAAAATGGTTACAATTATTTACTCAAGTATTTGAATGACTTAGACCACC
CACAACTCATTTTTGAATCTACAGGTATCTATTCAAGAGGTATGGAACGATTTTGTTGTGTAAATCAAATTAACTATATTCAAATGAATCCGTTAGAAGC
CAAATTTAAAACGAGCGCTCTAAGATCATGGAAAACTGATCAGGCAGATGCTCATAAGCTTGCTTGTTTAGGACCGACGCTTAAACAAACAGACAGCTTA
CCTATACATGAGTTAATATTCTTTGAATTAAGAGAACGCGTCCGTTTTCATCTAGAAATCGAGAATGAACAAAATCGACTTAAATTTCAGATCCTTGAAT
TACTCCATCAAACATTCCCTGGTTTAGAAAGATTGTTTAGTAGTCGATATTCAATCATTGCACTCAACATCGCAGAAATCTTTACTCATCCAGACATGGT
TCTTGATATCGACAAGGAGGTACTGATTACACATATATTCAATTCTACAGATAAGGGAATGTCAATGGATAAAGCTACAAAATATGCACTTCAATTAAGG
GTGATTGCTCAAGAAAGCTATCCTAATGTCGATAGACATTCCTTTCTAGTCGAAAAATTACGCTTACTTATTCAACAATTAAAACAATCTATTCATCATC
TCAAACAATTAGATGATGCCATGATTCAATTAGCACAACAACTCGATTATTTTGAAAATATTCATTCGATACCTGGTATTGGTAAGCTAAGCACAGCTAT
GATTATTGGGGAGATTGGTGATATTAAGCGATTTAAATCAAATAAACAACTCAATGCTTTTGTTGGCATTGATATCAAACGATATCAATCAGGTCATACA
CACTGTAGAGATACCATCAACAAGCGTGGTAATAAAAAAGCGAGAAAACTTTTATTTTGGGTGATTATGAATATAATAAGAGGGCAGCATCATTATGACA
ATCATGTCGTCGATTATTACTACAAACTAAGAAAGCAGCCTAATGAGAAACCTCATAAGACTGCCATCATTGCTTGTATAAATCGATTATTAAAAACAAT
TCATTATCTTGTAATGAATCATAAATTGTACGATTATCAAATGTCACCACATTAGCCAAACGTACAATCAAATATAGTTTAACACCTTATTCAAAAAAAT
TAAAATGAACGGTTTAGTTAAGTAATGCTTATTTTAATTATAAGTACTTGACTAATCGTAGGAA
GATTTTAAATCCGTATAAAAAACAAGTCAGCTTTACTCTCGCCTTTTGAAATTCGTTTGTAGTATGTTGGGTTCTTGAAACCGTGTATAGGAAAATGAAA
TGAGAAAGGTTAAGTAAAGTTTTTAGCTTCTCAATTATTCAAAGGAGGTTTTTTTATCGATTACTTAGGTGTTGATATTAGTAAAAGAAGTAGTGTAGTT
GCACATTATAAAAATGGAAAATTCCAAAAAGAGTTTTTCATCCAGAATAATAAAAATGGTTACAATTATTTACTCAAGTATTTGAATGACTTAGACCACC
CACAACTCATTTTTGAATCTACAGGTATCTATTCAAGAGGTATGGAACGATTTTGTTGTGTAAATCAAATTAACTATATTCAAATGAATCCGTTAGAAGC
CAAATTTAAAACGAGCGCTCTAAGATCATGGAAAACTGATCAGGCAGATGCTCATAAGCTTGCTTGTTTAGGACCGACGCTTAAACAAACAGACAGCTTA
CCTATACATGAGTTAATATTCTTTGAATTAAGAGAACGCGTCCGTTTTCATCTAGAAATCGAGAATGAACAAAATCGACTTAAATTTCAGATCCTTGAAT
TACTCCATCAAACATTCCCTGGTTTAGAAAGATTGTTTAGTAGTCGATATTCAATCATTGCACTCAACATCGCAGAAATCTTTACTCATCCAGACATGGT
TCTTGATATCGACAAGGAGGTACTGATTACACATATATTCAATTCTACAGATAAGGGAATGTCAATGGATAAAGCTACAAAATATGCACTTCAATTAAGG
GTGATTGCTCAAGAAAGCTATCCTAATGTCGATAGACATTCCTTTCTAGTCGAAAAATTACGCTTACTTATTCAACAATTAAAACAATCTATTCATCATC
TCAAACAATTAGATGATGCCATGATTCAATTAGCACAACAACTCGATTATTTTGAAAATATTCATTCGATACCTGGTATTGGTAAGCTAAGCACAGCTAT
GATTATTGGGGAGATTGGTGATATTAAGCGATTTAAATCAAATAAACAACTCAATGCTTTTGTTGGCATTGATATCAAACGATATCAATCAGGTCATACA
CACTGTAGAGATACCATCAACAAGCGTGGTAATAAAAAAGCGAGAAAACTTTTATTTTGGGTGATTATGAATATAATAAGAGGGCAGCATCATTATGACA
ATCATGTCGTCGATTATTACTACAAACTAAGAAAGCAGCCTAATGAGAAACCTCATAAGACTGCCATCATTGCTTGTATAAATCGATTATTAAAAACAAT
TCATTATCTTGTAATGAATCATAAATTGTACGATTATCAAATGTCACCACATTAGCCAAACGTACAATCAAATATAGTTTAACACCTTATTCAAAAAAAT
TAAAATGAACGGTTTAGTTAAGTAATGCTTATTTTAATTATAAGTACTTGACTAATCGTAGGAA
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1014 bp | 337 aa | 442 | 1455 | + | No |
Chemistry : DEDD
ORF sequence :
MERFCCVNQINYIQMNPLEAKFKTSALRSWKTDQADAHKLACLGPTLKQTDSLPIHELIFFELRERVRFHLEIENEQNRLKFQILELLHQTFPGLERLFS
SRYSIIALNIAEIFTHPDMVLDIDKEVLITHIFNSTDKGMSMDKATKYALQLRVIAQESYPNVDRHSFLVEKLRLLIQQLKQSIHHLKQLDDAMIQLAQQ
LDYFENIHSIPGIGKLSTAMIIGEIGDIKRFKSNKQLNAFVGIDIKRYQSGHTHCRDTINKRGNKKARKLLFWVIMNIIRGQHHYDNHVVDYYYKLRKQP
NEKPHKTAIIACINRLLKTIHYLVMNHKLYDYQMSPH
SRYSIIALNIAEIFTHPDMVLDIDKEVLITHIFNSTDKGMSMDKATKYALQLRVIAQESYPNVDRHSFLVEKLRLLIQQLKQSIHHLKQLDDAMIQLAQQ
LDYFENIHSIPGIGKLSTAMIIGEIGDIKRFKSNKQLNAFVGIDIKRYQSGHTHCRDTINKRGNKKARKLLFWVIMNIIRGQHHYDNHVVDYYYKLRKQP
NEKPHKTAIIACINRLLKTIHYLVMNHKLYDYQMSPH
Blast result :
Comments
ISSep2 is 53% aa similar to ISL4. There are 14 full and 3 partial copies of ISSep2 in Staphylococcus epidermidis genome and 2 partial copies in Staphylococcus aureus Mu50, MW2 and MSSA476 genomes and 3 partial copies in Staphylococcus aureus MRSA252.
References
1] Zhang,Y., Ren,S., Li,H., Fu,G., Lu,L., Lu,G., Jia,J., Tu,Y., Qin,Z., Chen,Z. and Wen,Y (2002) Genbank direct submission.