ISPlu16

  • Family IS630
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_005126 ND Photorhabdus luminescens
Photorhabdus luminescens subsp. laumondii TTO1
DNA section
IS Length : 1156 bp

Ends


IR Length : 16/19

IRL : ATAAATAACTTTTCAAAATAATAGATCACTTGGAGGGAACTCAGTCCGAT
IRR : ATAAATAAGATTTCATAATTGTGCTACACCCATTTTTTGTCTTCCTGGCT

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

ATAAATAACTTTTCAAAATAATAGATCACTTGGAGGGAACTCAGTCCGATTTTTGCGATCTGATCAATTGCGAAAAATCCCAAACCCCAACACGGACTGA
GTGATGCCTATCATAGCACCTATACCTCAAGATGAATGCCAGAAAATGAGAAAACTTATCCATAAAACCCGTGATAAGAACTATTCCCGTCGATTAACCG
CGTTATTGATGCTCAATGAAGGATTGACAGTGACTTATGTCGCCAAGACCCTTCATGCCGCACGCTCTTCCGTCAATCGTTGGGTTCAGTGGTTTACATT
ATATGGGCTGGAAGGACTCGAAAGTTTACCCGTTGGCCGACCTGTTGTCTGGGATCTCTCCCCACTCTATAACCTCTTACTTTTCTTATTACAGCAATCC
CCCCAAAAGTTAGGCTATCTCCGCTCTCGCTGGAGCCTTGAACTCATGACTCATACCCTCAATGAATTACTCAACCTCTCTCTGACGCAAAATGTCCTTT
ATCGTTACTTTGCTCAGGTGGGGATTGTCTGGCGTAGAGCGGCACCCACAGTGAAACAACCTGATCCCGAATACGATGAGAAAATGGCAAAGATCGCGGA
AGCCAAAGCGAACATTTCAGAAAAACATCCCGTTTTTTATGAAGATGAGGTGGATATTGATCTAAACCCGAAAATCGGCGCGGACTGGTGCTTCAAAGGA
CAACAAAAACGGGTTATCACCCCGGGAAAAAACGAAAAACATTACCTTGCGGGCTGCCTTAATGCCCAAACAGAGCAAATCACCTATGTTAAAGGAATAA
AAAAGAATTCTGATTTATTTATCAAAATGTTAGATGAACTGAATCATCAATATCCCCATGCGGAAACCCTCACATTAATCTTAGATAACTACTGTATTCA
TAAAAGTCAGAAGGTAAAGGACTGGCTGGCACGACATCCAAAATTTACCCTGTTGTTTTTACCGGTCTATTCACCGTGGCTAAATAAAATAGAACGGTTA
TGGCAATCGCTCCATGAGACAATAACGCGAAATCATTGTTGTCAATTTATGTGGCAGTTACTGAATTATGTTGATGCCTTTTTGGCATCGTTTTCATCAC
AGCAAAAGCCAGGAAGACAAAAAATGGGTGTAGCACAATTATGAAATCTTATTTAT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1041 bp346 aa1041144+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPIIAPIPQDECQKMRKLIHKTRDKNYSRRLTALLMLNEGLTVTYVAKTLHAARSSVNRWVQWFTLYGLEGLESLPVGRPVVWDLSPLYNLLLFLLQQSP
QKLGYLRSRWSLELMTHTLNELLNLSLTQNVLYRYFAQVGIVWRRAAPTVKQPDPEYDEKMAKIAEAKANISEKHPVFYEDEVDIDLNPKIGADWCFKGQ
QKRVITPGKNEKHYLAGCLNAQTEQITYVKGIKKNSDLFIKMLDELNHQYPHAETLTLILDNYCIHKSQKVKDWLARHPKFTLLFLPVYSPWLNKIERLW
QSLHETITRNHCCQFMWQLLNYVDAFLASFSSQQKPGRQKMGVAQL

 

Blast result :
Comments
ISPlu16 is 70% aa similar to IS630.
There are 2 complete copies in the genome.
References
1] Duchaud,E., Rusniok,C., Frangeul,L., Buchrieser,C., Taourit,S., Bocs,S., Boursaux-Eude,C., Chandler,M., Dassa,E., Derose,R.,Derzelle,S., Freyssinet,G., Gaudriault,S., Givaudan,A., Glaser,P.,Medigue,C., Lanois,A., Powell,K., Siguier,P., Wingate,V.,Zouine,M., Boemare,N., Danchin,A. and Kunst,(2003) F.Nat. Biotechnol