ISPlu16
- Family IS630
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_005126 | ND | Photorhabdus luminescens | Photorhabdus luminescens subsp. laumondii TTO1 |
DNA section
IS Length : 1156 bp
Ends
IR Length : 16/19
IRL : ATAAATAACTTTTCAAAATAATAGATCACTTGGAGGGAACTCAGTCCGAT
IRR : ATAAATAAGATTTCATAATTGTGCTACACCCATTTTTTGTCTTCCTGGCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
ATAAATAACTTTTCAAAATAATAGATCACTTGGAGGGAACTCAGTCCGATTTTTGCGATCTGATCAATTGCGAAAAATCCCAAACCCCAACACGGACTGA
GTGATGCCTATCATAGCACCTATACCTCAAGATGAATGCCAGAAAATGAGAAAACTTATCCATAAAACCCGTGATAAGAACTATTCCCGTCGATTAACCG
CGTTATTGATGCTCAATGAAGGATTGACAGTGACTTATGTCGCCAAGACCCTTCATGCCGCACGCTCTTCCGTCAATCGTTGGGTTCAGTGGTTTACATT
ATATGGGCTGGAAGGACTCGAAAGTTTACCCGTTGGCCGACCTGTTGTCTGGGATCTCTCCCCACTCTATAACCTCTTACTTTTCTTATTACAGCAATCC
CCCCAAAAGTTAGGCTATCTCCGCTCTCGCTGGAGCCTTGAACTCATGACTCATACCCTCAATGAATTACTCAACCTCTCTCTGACGCAAAATGTCCTTT
ATCGTTACTTTGCTCAGGTGGGGATTGTCTGGCGTAGAGCGGCACCCACAGTGAAACAACCTGATCCCGAATACGATGAGAAAATGGCAAAGATCGCGGA
AGCCAAAGCGAACATTTCAGAAAAACATCCCGTTTTTTATGAAGATGAGGTGGATATTGATCTAAACCCGAAAATCGGCGCGGACTGGTGCTTCAAAGGA
CAACAAAAACGGGTTATCACCCCGGGAAAAAACGAAAAACATTACCTTGCGGGCTGCCTTAATGCCCAAACAGAGCAAATCACCTATGTTAAAGGAATAA
AAAAGAATTCTGATTTATTTATCAAAATGTTAGATGAACTGAATCATCAATATCCCCATGCGGAAACCCTCACATTAATCTTAGATAACTACTGTATTCA
TAAAAGTCAGAAGGTAAAGGACTGGCTGGCACGACATCCAAAATTTACCCTGTTGTTTTTACCGGTCTATTCACCGTGGCTAAATAAAATAGAACGGTTA
TGGCAATCGCTCCATGAGACAATAACGCGAAATCATTGTTGTCAATTTATGTGGCAGTTACTGAATTATGTTGATGCCTTTTTGGCATCGTTTTCATCAC
AGCAAAAGCCAGGAAGACAAAAAATGGGTGTAGCACAATTATGAAATCTTATTTAT
GTGATGCCTATCATAGCACCTATACCTCAAGATGAATGCCAGAAAATGAGAAAACTTATCCATAAAACCCGTGATAAGAACTATTCCCGTCGATTAACCG
CGTTATTGATGCTCAATGAAGGATTGACAGTGACTTATGTCGCCAAGACCCTTCATGCCGCACGCTCTTCCGTCAATCGTTGGGTTCAGTGGTTTACATT
ATATGGGCTGGAAGGACTCGAAAGTTTACCCGTTGGCCGACCTGTTGTCTGGGATCTCTCCCCACTCTATAACCTCTTACTTTTCTTATTACAGCAATCC
CCCCAAAAGTTAGGCTATCTCCGCTCTCGCTGGAGCCTTGAACTCATGACTCATACCCTCAATGAATTACTCAACCTCTCTCTGACGCAAAATGTCCTTT
ATCGTTACTTTGCTCAGGTGGGGATTGTCTGGCGTAGAGCGGCACCCACAGTGAAACAACCTGATCCCGAATACGATGAGAAAATGGCAAAGATCGCGGA
AGCCAAAGCGAACATTTCAGAAAAACATCCCGTTTTTTATGAAGATGAGGTGGATATTGATCTAAACCCGAAAATCGGCGCGGACTGGTGCTTCAAAGGA
CAACAAAAACGGGTTATCACCCCGGGAAAAAACGAAAAACATTACCTTGCGGGCTGCCTTAATGCCCAAACAGAGCAAATCACCTATGTTAAAGGAATAA
AAAAGAATTCTGATTTATTTATCAAAATGTTAGATGAACTGAATCATCAATATCCCCATGCGGAAACCCTCACATTAATCTTAGATAACTACTGTATTCA
TAAAAGTCAGAAGGTAAAGGACTGGCTGGCACGACATCCAAAATTTACCCTGTTGTTTTTACCGGTCTATTCACCGTGGCTAAATAAAATAGAACGGTTA
TGGCAATCGCTCCATGAGACAATAACGCGAAATCATTGTTGTCAATTTATGTGGCAGTTACTGAATTATGTTGATGCCTTTTTGGCATCGTTTTCATCAC
AGCAAAAGCCAGGAAGACAAAAAATGGGTGTAGCACAATTATGAAATCTTATTTAT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1041 bp | 346 aa | 104 | 1144 | + | No |
Chemistry : DDE
ORF sequence :
MPIIAPIPQDECQKMRKLIHKTRDKNYSRRLTALLMLNEGLTVTYVAKTLHAARSSVNRWVQWFTLYGLEGLESLPVGRPVVWDLSPLYNLLLFLLQQSP
QKLGYLRSRWSLELMTHTLNELLNLSLTQNVLYRYFAQVGIVWRRAAPTVKQPDPEYDEKMAKIAEAKANISEKHPVFYEDEVDIDLNPKIGADWCFKGQ
QKRVITPGKNEKHYLAGCLNAQTEQITYVKGIKKNSDLFIKMLDELNHQYPHAETLTLILDNYCIHKSQKVKDWLARHPKFTLLFLPVYSPWLNKIERLW
QSLHETITRNHCCQFMWQLLNYVDAFLASFSSQQKPGRQKMGVAQL
QKLGYLRSRWSLELMTHTLNELLNLSLTQNVLYRYFAQVGIVWRRAAPTVKQPDPEYDEKMAKIAEAKANISEKHPVFYEDEVDIDLNPKIGADWCFKGQ
QKRVITPGKNEKHYLAGCLNAQTEQITYVKGIKKNSDLFIKMLDELNHQYPHAETLTLILDNYCIHKSQKVKDWLARHPKFTLLFLPVYSPWLNKIERLW
QSLHETITRNHCCQFMWQLLNYVDAFLASFSSQQKPGRQKMGVAQL
Blast result :
Comments
ISPlu16 is 70% aa similar to IS630.
There are 2 complete copies in the genome.
There are 2 complete copies in the genome.
References
1] Duchaud,E., Rusniok,C., Frangeul,L., Buchrieser,C., Taourit,S., Bocs,S., Boursaux-Eude,C., Chandler,M., Dassa,E., Derose,R.,Derzelle,S., Freyssinet,G., Gaudriault,S., Givaudan,A., Glaser,P.,Medigue,C., Lanois,A., Powell,K., Siguier,P., Wingate,V.,Zouine,M., Boemare,N., Danchin,A. and Kunst,(2003) F.Nat. Biotechnol